Wall clock time and date at job start Tue Mar 31 2020 03:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30252 * 125.62139 * 2 1 4 4 C 1.34479 * 108.70156 * 180.02562 * 3 2 1 5 5 C 1.34323 * 107.67015 * 0.02562 * 4 3 2 6 6 C 1.50698 * 126.44765 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.47294 * 89.99293 * 6 5 4 8 8 O 1.21279 * 119.99507 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00020 * 180.02562 * 7 6 5 10 10 C 1.46923 * 120.63018 * 0.02562 * 9 7 6 11 11 C 1.53194 * 108.77271 * 126.37132 * 10 9 7 12 12 C 1.53041 * 109.31391 * 54.63203 * 11 10 9 13 13 C 1.53035 * 109.54008 * 298.63660 * 12 11 10 14 14 H 1.09004 * 109.49401 * 301.37995 * 13 12 11 15 15 N 1.46493 * 109.49907 * 181.31723 * 13 12 11 16 16 C 1.36939 * 120.00267 * 154.99833 * 15 13 12 17 17 H 1.07997 * 119.99768 * 0.02562 * 16 15 13 18 18 C 1.38809 * 120.00051 * 179.97438 * 16 15 13 19 19 N 1.31620 * 119.99872 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00065 * 0.02562 * 18 16 15 21 21 H 1.48491 * 109.47526 * 89.99756 * 20 18 16 22 22 H 1.48506 * 109.46883 * 209.99623 * 20 18 16 23 23 H 1.48499 * 109.47043 * 329.98941 * 20 18 16 24 24 C 1.46930 * 120.62718 * 179.72379 * 9 7 6 25 25 O 1.33973 * 125.61911 * 180.33513 * 2 1 3 26 26 H 1.08998 * 109.47154 * 89.97136 * 1 2 3 27 27 H 1.08996 * 109.47820 * 209.97618 * 1 2 3 28 28 H 1.09004 * 109.47392 * 329.97718 * 1 2 3 29 29 H 1.08004 * 126.16812 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.46665 * 329.99674 * 6 5 4 31 31 H 1.09000 * 109.47722 * 210.00006 * 6 5 4 32 32 H 1.08993 * 109.58614 * 246.15081 * 10 9 7 33 33 H 1.08997 * 109.58994 * 6.58410 * 10 9 7 34 34 H 1.08998 * 109.49955 * 174.58900 * 11 10 9 35 35 H 1.09005 * 109.49931 * 294.64986 * 11 10 9 36 36 H 1.09001 * 109.45952 * 58.66075 * 12 11 10 37 37 H 1.09003 * 109.45569 * 178.62580 * 12 11 10 38 38 H 0.96997 * 120.00030 * 334.99758 * 15 13 12 39 39 H 0.97009 * 119.99781 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.58354 * 353.41704 * 24 9 7 41 41 H 1.08995 * 109.58713 * 113.84767 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2655 1.0588 0.0000 4 6 3.5521 0.6674 -0.0006 5 6 3.5697 -0.6757 -0.0015 6 6 4.7936 -1.5550 -0.0018 7 6 5.2014 -1.8490 1.4189 8 8 4.5609 -1.3901 2.3408 9 7 6.2777 -2.6219 1.6648 10 6 7.0638 -3.1846 0.5584 11 6 8.5344 -2.8028 0.7544 12 6 8.9932 -3.2521 2.1436 13 6 8.1623 -2.5387 3.2126 14 1 8.2764 -1.4603 3.1023 15 7 8.6232 -2.9456 4.5423 16 6 8.4280 -2.1197 5.6171 17 1 7.9339 -1.1686 5.4844 18 6 8.8642 -2.5055 6.8771 19 7 8.6770 -1.7115 7.9100 20 14 9.7181 -4.1510 7.1066 21 1 11.1818 -3.9787 6.9253 22 1 9.4456 -4.6636 8.4735 23 1 9.2054 -5.1188 6.1037 24 6 6.6912 -2.9124 3.0445 25 8 2.2872 -1.0891 -0.0064 26 1 -0.3633 0.0005 -1.0276 27 1 -0.3634 -0.8901 0.5134 28 1 -0.3634 0.8898 0.5142 29 1 4.4157 1.3161 -0.0011 30 1 5.6080 -1.0439 -0.5152 31 1 4.5695 -2.4895 -0.5164 32 1 6.9655 -4.2700 0.5554 33 1 6.7044 -2.7803 -0.3878 34 1 9.1421 -3.2934 -0.0058 35 1 8.6446 -1.7219 0.6664 36 1 8.8598 -4.3297 2.2392 37 1 10.0461 -3.0034 2.2763 38 1 9.0665 -3.8000 4.6615 39 1 8.9822 -1.9809 8.7905 40 1 6.0858 -2.3286 3.7379 41 1 6.5618 -3.9752 3.2486 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999352230.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:59 Heat of formation + Delta-G solvation = -27.563043 kcal Electronic energy + Delta-G solvation = -23450.103006 eV Core-core repulsion = 19944.900001 eV Total energy + Delta-G solvation = -3505.203006 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.34845 -41.23540 -38.82649 -36.35204 -35.79497 -34.37548 -33.84853 -32.91268 -31.62916 -30.27077 -27.44755 -25.92707 -25.59294 -23.46720 -23.11747 -22.35933 -21.72347 -20.18272 -19.53485 -18.52217 -17.99880 -17.52527 -16.87515 -16.83295 -16.50161 -15.91371 -15.47798 -15.27963 -15.05276 -15.01238 -14.72727 -14.33692 -14.11777 -13.97967 -13.86886 -13.76920 -13.38763 -13.24704 -13.08823 -12.97750 -12.51932 -12.31445 -12.17775 -11.92310 -11.87061 -11.77506 -11.59974 -11.34836 -11.16652 -10.98674 -9.86162 -9.68153 -9.27976 -8.06819 -5.43246 0.36525 1.34815 1.40892 1.47602 1.52032 1.57152 1.68390 2.07598 2.45300 3.13931 3.23909 3.46453 3.52911 3.69468 3.96372 4.02077 4.07010 4.12335 4.15553 4.28577 4.33566 4.36809 4.59478 4.62427 4.64395 4.68064 4.75732 4.86601 4.93074 4.98279 5.01122 5.05704 5.17591 5.36881 5.38172 5.47737 5.48241 5.72163 6.17101 6.41079 6.69023 7.02365 7.11846 7.75559 7.97281 9.15132 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021382 B = 0.003509 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.227229 B = 7978.511705 C = 8833.474029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.183 3.817 3 N -0.519 5.519 4 C -0.045 4.045 5 C -0.040 4.040 6 C -0.040 4.040 7 C 0.501 3.499 8 O -0.597 6.597 9 N -0.601 5.601 10 C 0.096 3.904 11 C -0.124 4.124 12 C -0.123 4.123 13 C 0.169 3.831 14 H 0.030 0.970 15 N -0.744 5.744 16 C -0.239 4.239 17 H 0.042 0.958 18 C -0.066 4.066 19 N -0.986 5.986 20 Si 0.966 3.034 21 H -0.272 1.272 22 H -0.297 1.297 23 H -0.246 1.246 24 C 0.105 3.895 25 O -0.211 6.211 26 H 0.118 0.882 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.196 0.804 30 H 0.169 0.831 31 H 0.150 0.850 32 H 0.091 0.909 33 H 0.127 0.873 34 H 0.117 0.883 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.371 0.629 39 H 0.259 0.741 40 H 0.038 0.962 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.729 -5.527 -27.105 28.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.024 4.024 3 N -0.249 5.249 4 C -0.183 4.183 5 C -0.093 4.093 6 C -0.079 4.079 7 C 0.291 3.709 8 O -0.477 6.477 9 N -0.334 5.334 10 C -0.024 4.024 11 C -0.162 4.162 12 C -0.161 4.161 13 C 0.060 3.940 14 H 0.048 0.952 15 N -0.388 5.388 16 C -0.370 4.370 17 H 0.060 0.940 18 C -0.257 4.257 19 N -0.636 5.636 20 Si 0.792 3.208 21 H -0.198 1.198 22 H -0.224 1.224 23 H -0.170 1.170 24 C -0.021 4.021 25 O -0.099 6.099 26 H 0.136 0.864 27 H 0.120 0.880 28 H 0.125 0.875 29 H 0.213 0.787 30 H 0.187 0.813 31 H 0.168 0.832 32 H 0.109 0.891 33 H 0.145 0.855 34 H 0.135 0.865 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.205 0.795 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.358 -4.544 -26.515 28.170 hybrid contribution 0.702 -0.897 1.572 1.941 sum -7.656 -5.441 -24.944 26.653 Atomic orbital electron populations 1.20528 0.78196 1.06132 1.06416 1.27281 0.98099 0.78102 0.98886 1.70411 1.02864 1.31462 1.20192 1.23368 0.95491 0.93686 1.05728 1.23007 0.83758 0.95226 1.07291 1.20286 0.91980 1.02285 0.93354 1.21228 0.80031 0.77649 0.92035 1.90757 1.55063 1.53390 1.48533 1.48281 1.27850 1.49544 1.07749 1.22283 0.90804 1.00298 0.89046 1.21907 0.95873 1.02342 0.96086 1.21818 0.99419 1.00559 0.94317 1.20571 0.91579 0.97200 0.84680 0.95210 1.42662 1.70961 1.20794 1.04350 1.18952 1.31299 0.99123 0.87633 0.93984 1.25656 1.02418 1.02799 0.94873 1.69929 1.53897 1.39777 0.99986 0.85266 0.78747 0.79594 0.77235 1.19815 1.22418 1.16991 1.22063 0.97606 0.99960 0.82464 1.84345 1.17066 1.38375 1.70120 0.86378 0.88032 0.87529 0.78723 0.81348 0.83236 0.89097 0.85514 0.86524 0.91654 0.90596 0.91393 0.79529 0.93221 0.94375 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.75 10.51 71.23 0.75 0.00 16 2 C 0.18 4.54 8.34 88.34 0.74 5.27 16 3 N -0.52 -15.12 11.29 -303.83 -3.43 -18.55 16 4 C -0.04 -1.21 11.80 83.39 0.98 -0.23 16 5 C -0.04 -1.00 5.88 24.79 0.15 -0.85 16 6 C -0.04 -0.67 4.60 29.10 0.13 -0.54 16 7 C 0.50 14.67 7.69 87.66 0.67 15.34 16 8 O -0.60 -25.69 15.45 -3.02 -0.05 -25.74 16 9 N -0.60 -15.77 2.98 -819.83 -2.44 -18.21 16 10 C 0.10 1.28 6.34 86.36 0.55 1.83 16 11 C -0.12 -1.82 6.08 30.67 0.19 -1.64 16 12 C -0.12 -3.00 5.36 30.62 0.16 -2.83 16 13 C 0.17 6.30 2.91 44.91 0.13 6.44 16 14 H 0.03 1.27 8.08 -2.38 -0.02 1.25 16 15 N -0.74 -34.78 4.93 -323.34 -1.59 -36.38 16 16 C -0.24 -14.19 10.41 84.03 0.87 -13.32 16 17 H 0.04 2.84 8.06 -2.91 -0.02 2.82 16 18 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 19 N -0.99 -65.46 13.97 21.65 0.30 -65.15 16 20 Si 0.97 45.60 27.74 68.60 1.90 47.50 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 23 H -0.25 -10.20 6.52 99.48 0.65 -9.55 16 24 C 0.10 3.86 5.98 86.20 0.52 4.37 16 25 O -0.21 -5.65 10.78 -3.78 -0.04 -5.69 16 26 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.11 1.30 8.14 -2.38 -0.02 1.29 16 29 H 0.20 4.33 8.06 -2.91 -0.02 4.30 16 30 H 0.17 1.38 7.69 -2.39 -0.02 1.37 16 31 H 0.15 1.42 7.94 -2.39 -0.02 1.40 16 32 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.13 0.60 5.93 -2.39 -0.01 0.58 16 34 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 38 H 0.37 16.03 5.66 -92.71 -0.52 15.50 16 39 H 0.26 16.25 8.31 -92.70 -0.77 15.48 16 40 H 0.04 1.82 7.01 -2.39 -0.02 1.81 16 41 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -91.85 339.29 1.42 -90.43 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.46 Total: 21.49 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 6.31 Total: 10.31 kcal Atomic # 7 Polarization: -131.13 SS G_CDS: -7.16 Total: -138.30 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.09 Total: -31.43 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.90 Total: 47.50 kcal Total: -91.85 1.42 -90.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999352230.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.865 kcal (2) G-P(sol) polarization free energy of solvation -91.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds