Wall clock time and date at job start Tue Mar 31 2020 03:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30011 * 127.33722 * 2 1 4 4 O 1.20656 * 112.30160 * 180.02562 * 3 2 1 5 5 C 1.33494 * 113.15517 * 359.74094 * 4 3 2 6 6 C 1.50699 * 126.82611 * 180.28056 * 5 4 3 7 7 C 1.37355 * 106.34413 * 0.41576 * 5 4 3 8 8 C 1.47398 * 128.56593 * 179.89437 * 7 5 4 9 9 O 1.21613 * 119.99746 * 269.67209 * 8 7 5 10 10 N 1.34777 * 120.00231 * 89.39810 * 8 7 5 11 11 C 1.46504 * 119.99854 * 180.27823 * 10 8 7 12 12 C 1.52996 * 109.46681 * 179.97438 * 11 10 8 13 13 H 1.09004 * 110.64435 * 308.13662 * 12 11 10 14 14 C 1.55161 * 110.71706 * 185.00129 * 12 11 10 15 15 C 1.54915 * 101.58172 * 206.13277 * 14 12 11 16 16 N 1.47429 * 104.82997 * 37.00518 * 15 14 12 17 17 C 1.36934 * 125.64779 * 155.83809 * 16 15 14 18 18 H 1.07994 * 120.00273 * 180.02562 * 17 16 15 19 19 C 1.38819 * 120.00133 * 0.02562 * 17 16 15 20 20 N 1.31627 * 119.99602 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00320 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47381 * 89.99804 * 21 19 17 23 23 H 1.48498 * 109.47049 * 210.00457 * 21 19 17 24 24 H 1.48508 * 109.47077 * 330.00017 * 21 19 17 25 25 C 1.47020 * 108.70551 * 335.87395 * 16 15 14 26 26 H 1.09005 * 109.46669 * 269.97099 * 1 2 3 27 27 H 1.08995 * 109.47496 * 29.96931 * 1 2 3 28 28 H 1.08997 * 109.47218 * 149.97609 * 1 2 3 29 29 H 1.08994 * 109.47632 * 270.15664 * 6 5 4 30 30 H 1.09003 * 109.47560 * 30.16101 * 6 5 4 31 31 H 1.09005 * 109.46904 * 150.15479 * 6 5 4 32 32 H 0.97000 * 119.99736 * 0.27097 * 10 8 7 33 33 H 1.08998 * 109.46968 * 299.99782 * 11 10 8 34 34 H 1.08997 * 109.47198 * 59.99605 * 11 10 8 35 35 H 1.09006 * 111.00251 * 324.20053 * 14 12 11 36 36 H 1.08997 * 111.00730 * 88.01794 * 14 12 11 37 37 H 1.08994 * 110.36626 * 155.84114 * 15 14 12 38 38 H 1.08996 * 110.36331 * 278.17116 * 15 14 12 39 39 H 0.96994 * 119.99714 * 179.97438 * 20 19 17 40 40 H 1.08999 * 109.88352 * 241.64078 * 25 16 15 41 41 H 1.09003 * 109.88120 * 120.47415 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 -0.0005 5 6 3.6494 -0.6009 0.0046 6 6 4.9711 -1.3247 0.0115 7 6 2.3992 -1.1697 -0.0007 8 6 2.0400 -2.5993 -0.0005 9 8 1.8912 -3.1890 -1.0536 10 7 1.8820 -3.2542 1.1668 11 6 1.5311 -4.6766 1.1669 12 6 1.4138 -5.1727 2.6094 13 1 2.3062 -4.9131 3.1789 14 6 1.1664 -6.7041 2.6448 15 6 0.4275 -6.8686 3.9965 16 7 -0.4303 -5.6746 4.1054 17 6 -1.5758 -5.5801 4.8497 18 1 -2.1363 -4.6571 4.8634 19 6 -2.0166 -6.6707 5.5868 20 7 -1.3331 -7.7955 5.5706 21 14 -3.5795 -6.5421 6.6016 22 1 -4.7429 -6.9473 5.7725 23 1 -3.4778 -7.4365 7.7827 24 1 -3.7604 -5.1400 7.0566 25 6 0.1473 -4.6023 3.2818 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8902 -0.5133 28 1 -0.3633 -0.8897 -0.5142 29 1 5.2946 -1.5003 -1.0144 30 1 5.7150 -0.7181 0.5282 31 1 4.8599 -2.2793 0.5258 32 1 2.0008 -2.7839 2.0068 33 1 0.5785 -4.8158 0.6558 34 1 2.3065 -5.2422 0.6504 35 1 0.5344 -7.0171 1.8136 36 1 2.1085 -7.2522 2.6446 37 1 -0.1805 -7.7731 3.9887 38 1 1.1427 -6.8982 4.8185 39 1 -1.6409 -8.5574 6.0859 40 1 0.4124 -3.7531 3.9116 41 1 -0.5691 -4.2928 2.5208 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028399423.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:13 Heat of formation + Delta-G solvation = 41.097348 kcal Electronic energy + Delta-G solvation = -23317.386533 eV Core-core repulsion = 19815.160865 eV Total energy + Delta-G solvation = -3502.225668 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.08017 -39.70036 -37.69774 -34.77117 -34.72833 -33.84070 -32.51723 -29.95433 -29.01703 -28.63111 -27.98958 -25.82439 -24.57513 -23.15530 -21.07243 -20.40922 -19.98124 -19.68114 -18.07419 -17.93444 -16.90080 -16.48027 -16.11273 -15.46943 -14.88014 -14.61514 -14.38873 -13.83407 -13.76767 -13.63070 -13.43026 -13.42525 -12.99287 -12.82985 -12.64145 -12.55575 -11.84315 -11.78146 -11.56258 -11.33500 -10.99282 -10.83023 -10.59102 -10.30113 -10.12901 -10.08128 -10.04737 -9.82865 -9.62138 -9.56083 -9.11554 -8.68319 -6.87267 -5.68935 -3.10736 1.06831 1.70279 2.28059 2.60572 3.18594 3.37813 3.42856 3.44674 3.90712 4.01178 4.45421 4.60693 4.66359 4.94095 5.01353 5.05041 5.14299 5.18829 5.28044 5.32163 5.34222 5.43656 5.48647 5.57349 5.64178 5.81245 5.83138 5.98650 6.03548 6.28537 6.30549 6.50350 6.53124 6.65836 6.84766 7.37154 7.47110 7.59224 7.81868 8.00050 8.03794 8.32883 9.18668 9.79575 10.43986 11.35064 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022462 B = 0.003287 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.261077 B = 8515.158974 C = 9229.194711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.058 3.942 3 N -0.357 5.357 4 O 0.095 5.905 5 C 0.017 3.983 6 C -0.078 4.078 7 C -0.251 4.251 8 C 0.597 3.403 9 O -0.528 6.528 10 N -0.712 5.712 11 C 0.131 3.869 12 C -0.115 4.115 13 H 0.077 0.923 14 C -0.135 4.135 15 C 0.152 3.848 16 N -0.604 5.604 17 C -0.224 4.224 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.141 3.859 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.404 0.596 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.107 0.893 38 H 0.012 0.988 39 H 0.252 0.748 40 H 0.018 0.982 41 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.631 11.807 -10.153 19.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 N -0.064 5.064 4 O 0.034 5.966 5 C -0.046 4.046 6 C -0.136 4.136 7 C -0.258 4.258 8 C 0.381 3.619 9 O -0.405 6.405 10 N -0.362 5.362 11 C 0.008 3.992 12 C -0.134 4.134 13 H 0.095 0.905 14 C -0.174 4.174 15 C 0.027 3.973 16 N -0.331 5.331 17 C -0.352 4.352 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.745 3.255 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.015 3.985 26 H 0.107 0.893 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.238 0.762 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.125 0.875 38 H 0.030 0.970 39 H 0.063 0.937 40 H 0.036 0.964 41 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 11.198 12.546 -10.752 19.960 hybrid contribution -0.822 -0.402 1.003 1.358 sum 10.376 12.143 -9.749 18.713 Atomic orbital electron populations 1.20266 0.84997 1.04367 1.04153 1.24786 0.98669 0.86426 1.00559 1.73612 0.89106 1.23336 1.20370 1.84527 1.21549 1.22541 1.68013 1.24617 0.97366 0.83806 0.98861 1.20468 0.88999 0.99283 1.04826 1.21971 0.92888 0.95452 1.15527 1.16860 0.77122 0.83775 0.84183 1.90831 1.50359 1.67943 1.31330 1.46087 1.70015 1.12037 1.08081 1.21564 1.01127 0.78897 0.97603 1.22454 0.99270 0.98191 0.93474 0.90498 1.23015 1.00140 0.92542 1.01734 1.21938 0.92152 0.93608 0.89612 1.44502 1.26111 1.08757 1.53685 1.19074 0.98482 0.97881 1.19812 0.90540 1.24789 0.99260 0.96024 1.00538 1.69793 1.39421 1.02702 1.45149 0.86074 0.82714 0.77198 0.79519 1.21547 1.21622 1.20748 1.21333 0.91921 0.91975 0.93247 0.89294 0.89912 0.89583 0.88641 0.89038 0.88755 0.76167 0.90874 0.91280 0.91775 0.92061 0.87499 0.96994 0.93700 0.96438 0.95786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.49 36.01 0.38 -0.41 16 2 C 0.06 0.70 7.59 -79.76 -0.61 0.09 16 3 N -0.36 -4.49 12.01 34.78 0.42 -4.08 16 4 O 0.09 1.06 11.06 18.65 0.21 1.27 16 5 C 0.02 0.17 7.55 -34.63 -0.26 -0.09 16 6 C -0.08 -0.48 10.33 36.01 0.37 -0.11 16 7 C -0.25 -3.02 6.24 -102.89 -0.64 -3.66 16 8 C 0.60 8.04 7.60 -12.53 -0.10 7.95 16 9 O -0.53 -8.97 17.11 5.27 0.09 -8.88 16 10 N -0.71 -8.66 5.47 -61.39 -0.34 -9.00 16 11 C 0.13 1.79 5.02 -4.04 -0.02 1.77 16 12 C -0.11 -1.79 2.96 -88.79 -0.26 -2.05 16 13 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 14 C -0.14 -2.38 6.53 -24.58 -0.16 -2.54 16 15 C 0.15 3.56 5.89 -2.52 -0.01 3.54 16 16 N -0.60 -15.09 3.39 -170.07 -0.58 -15.66 16 17 C -0.22 -6.16 10.27 -15.06 -0.15 -6.32 16 18 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 19 C -0.01 -0.30 5.49 -17.42 -0.10 -0.39 16 20 N -0.92 -26.49 10.09 55.49 0.56 -25.93 16 21 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.14 2.77 6.75 -3.07 -0.02 2.75 16 26 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.56 8.11 -51.93 -0.42 0.14 16 32 H 0.40 4.29 8.45 -40.82 -0.35 3.94 16 33 H 0.07 1.12 7.93 -51.93 -0.41 0.70 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 1.13 8.05 -51.93 -0.42 0.71 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.11 2.85 5.87 -51.93 -0.31 2.54 16 38 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.25 7.03 8.31 -40.82 -0.34 6.70 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.02 0.48 7.68 -51.93 -0.40 0.08 16 LS Contribution 346.38 15.07 5.22 5.22 Total: -1.00 -32.80 346.38 -7.10 -39.90 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.07 Total: -0.15 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -1.58 Total: 0.52 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.06 Total: -54.66 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.30 Total: -7.61 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.80 -7.10 -39.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028399423.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.996 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds