Wall clock time and date at job start Tue Mar 31 2020 03:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30011 * 127.33722 * 2 1 4 4 O 1.20656 * 112.30160 * 180.02562 * 3 2 1 5 5 C 1.33494 * 113.15517 * 359.74094 * 4 3 2 6 6 C 1.50699 * 126.82611 * 180.28056 * 5 4 3 7 7 C 1.37355 * 106.34413 * 0.41576 * 5 4 3 8 8 C 1.47398 * 128.56593 * 179.89437 * 7 5 4 9 9 O 1.21613 * 119.99746 * 269.67209 * 8 7 5 10 10 N 1.34777 * 120.00231 * 89.39810 * 8 7 5 11 11 C 1.46504 * 119.99854 * 180.27823 * 10 8 7 12 12 C 1.52996 * 109.46681 * 179.97438 * 11 10 8 13 13 H 1.09004 * 110.64435 * 308.13662 * 12 11 10 14 14 C 1.55161 * 110.71706 * 185.00129 * 12 11 10 15 15 C 1.54915 * 101.58172 * 206.13277 * 14 12 11 16 16 N 1.47429 * 104.82997 * 37.00518 * 15 14 12 17 17 C 1.36934 * 125.64779 * 155.83809 * 16 15 14 18 18 H 1.07994 * 120.00273 * 180.02562 * 17 16 15 19 19 C 1.38819 * 120.00133 * 0.02562 * 17 16 15 20 20 N 1.31627 * 119.99602 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00320 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47381 * 89.99804 * 21 19 17 23 23 H 1.48498 * 109.47049 * 210.00457 * 21 19 17 24 24 H 1.48508 * 109.47077 * 330.00017 * 21 19 17 25 25 C 1.47020 * 108.70551 * 335.87395 * 16 15 14 26 26 H 1.09005 * 109.46669 * 269.97099 * 1 2 3 27 27 H 1.08995 * 109.47496 * 29.96931 * 1 2 3 28 28 H 1.08997 * 109.47218 * 149.97609 * 1 2 3 29 29 H 1.08994 * 109.47632 * 270.15664 * 6 5 4 30 30 H 1.09003 * 109.47560 * 30.16101 * 6 5 4 31 31 H 1.09005 * 109.46904 * 150.15479 * 6 5 4 32 32 H 0.97000 * 119.99736 * 0.27097 * 10 8 7 33 33 H 1.08998 * 109.46968 * 299.99782 * 11 10 8 34 34 H 1.08997 * 109.47198 * 59.99605 * 11 10 8 35 35 H 1.09006 * 111.00251 * 324.20053 * 14 12 11 36 36 H 1.08997 * 111.00730 * 88.01794 * 14 12 11 37 37 H 1.08994 * 110.36626 * 155.84114 * 15 14 12 38 38 H 1.08996 * 110.36331 * 278.17116 * 15 14 12 39 39 H 0.96994 * 119.99714 * 179.97438 * 20 19 17 40 40 H 1.08999 * 109.88352 * 241.64078 * 25 16 15 41 41 H 1.09003 * 109.88120 * 120.47415 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 -0.0005 5 6 3.6494 -0.6009 0.0046 6 6 4.9711 -1.3247 0.0115 7 6 2.3992 -1.1697 -0.0007 8 6 2.0400 -2.5993 -0.0005 9 8 1.8912 -3.1890 -1.0536 10 7 1.8820 -3.2542 1.1668 11 6 1.5311 -4.6766 1.1669 12 6 1.4138 -5.1727 2.6094 13 1 2.3062 -4.9131 3.1789 14 6 1.1664 -6.7041 2.6448 15 6 0.4275 -6.8686 3.9965 16 7 -0.4303 -5.6746 4.1054 17 6 -1.5758 -5.5801 4.8497 18 1 -2.1363 -4.6571 4.8634 19 6 -2.0166 -6.6707 5.5868 20 7 -1.3331 -7.7955 5.5706 21 14 -3.5795 -6.5421 6.6016 22 1 -4.7429 -6.9473 5.7725 23 1 -3.4778 -7.4365 7.7827 24 1 -3.7604 -5.1400 7.0566 25 6 0.1473 -4.6023 3.2818 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8902 -0.5133 28 1 -0.3633 -0.8897 -0.5142 29 1 5.2946 -1.5003 -1.0144 30 1 5.7150 -0.7181 0.5282 31 1 4.8599 -2.2793 0.5258 32 1 2.0008 -2.7839 2.0068 33 1 0.5785 -4.8158 0.6558 34 1 2.3065 -5.2422 0.6504 35 1 0.5344 -7.0171 1.8136 36 1 2.1085 -7.2522 2.6446 37 1 -0.1805 -7.7731 3.9887 38 1 1.1427 -6.8982 4.8185 39 1 -1.6409 -8.5574 6.0859 40 1 0.4124 -3.7531 3.9116 41 1 -0.5691 -4.2928 2.5208 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028399423.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:12 Heat of formation + Delta-G solvation = 19.480410 kcal Electronic energy + Delta-G solvation = -23318.323914 eV Core-core repulsion = 19815.160865 eV Total energy + Delta-G solvation = -3503.163049 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = -2.04 seconds Orbital eigenvalues (eV) -45.94920 -40.81954 -39.24058 -36.09669 -35.63898 -34.64799 -34.22544 -31.66004 -30.09001 -29.74901 -28.90520 -27.38115 -25.95970 -24.45075 -22.28593 -21.73191 -21.30140 -20.84276 -19.13411 -18.86510 -18.70635 -17.45698 -17.32742 -16.76694 -16.53458 -15.95816 -15.60272 -15.24875 -14.77886 -14.42171 -14.37852 -14.26379 -14.06798 -13.99954 -13.56785 -13.53374 -13.43356 -13.37552 -13.14205 -12.82218 -12.66839 -12.16016 -12.01662 -11.93444 -11.82292 -11.60322 -11.44001 -11.21037 -10.97324 -10.73236 -10.44152 -10.20567 -8.86845 -7.77095 -5.20909 0.26666 0.81059 1.25355 1.46986 1.48362 1.56833 1.77341 2.24307 2.49923 3.06918 3.22658 3.32594 3.61296 3.73345 3.85120 3.88793 3.98688 4.08945 4.22932 4.46320 4.47955 4.53782 4.60123 4.62371 4.66995 4.71142 4.76257 4.81742 4.92634 5.04267 5.05285 5.09388 5.15622 5.27669 5.41020 5.48844 5.68622 5.84468 6.33216 6.37548 7.02141 7.12394 7.16400 7.80425 8.43247 9.24627 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022462 B = 0.003287 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.261077 B = 8515.158974 C = 9229.194711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.049 3.951 3 N -0.377 5.377 4 O 0.093 5.907 5 C 0.038 3.962 6 C -0.081 4.081 7 C -0.280 4.280 8 C 0.607 3.393 9 O -0.566 6.566 10 N -0.700 5.700 11 C 0.143 3.857 12 C -0.093 4.093 13 H 0.099 0.901 14 C -0.122 4.122 15 C 0.151 3.849 16 N -0.629 5.629 17 C -0.240 4.240 18 H 0.079 0.921 19 C -0.066 4.066 20 N -0.948 5.948 21 Si 0.977 3.023 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.271 1.271 25 C 0.136 3.864 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.414 0.586 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.070 0.930 38 H -0.010 1.010 39 H 0.247 0.753 40 H 0.026 0.974 41 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.966 12.890 -10.550 21.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 N -0.086 5.086 4 O 0.033 5.967 5 C -0.026 4.026 6 C -0.138 4.138 7 C -0.287 4.287 8 C 0.392 3.608 9 O -0.445 6.445 10 N -0.351 5.351 11 C 0.019 3.981 12 C -0.112 4.112 13 H 0.117 0.883 14 C -0.161 4.161 15 C 0.026 3.974 16 N -0.355 5.355 17 C -0.369 4.369 18 H 0.097 0.903 19 C -0.259 4.259 20 N -0.598 5.598 21 Si 0.806 3.194 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.196 1.196 25 C 0.011 3.989 26 H 0.116 0.884 27 H 0.112 0.888 28 H 0.099 0.901 29 H 0.126 0.874 30 H 0.135 0.865 31 H 0.119 0.881 32 H 0.250 0.750 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.008 0.992 39 H 0.056 0.944 40 H 0.044 0.956 41 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 12.555 13.668 -11.143 21.648 hybrid contribution -1.199 -0.706 1.125 1.790 sum 11.355 12.962 -10.018 19.933 Atomic orbital electron populations 1.20334 0.84019 1.04629 1.04821 1.25130 0.99547 0.86436 1.00146 1.73603 0.89608 1.23837 1.21522 1.84506 1.21094 1.23170 1.67918 1.25271 0.98219 0.83189 0.95940 1.20735 0.87512 0.99455 1.06052 1.21876 0.93933 0.94651 1.18251 1.16905 0.76160 0.84098 0.83634 1.90813 1.52174 1.68911 1.32647 1.45940 1.69274 1.11489 1.08374 1.21338 1.01024 0.79826 0.95886 1.22289 0.98067 0.96266 0.94582 0.88264 1.22850 1.00731 0.94519 0.97955 1.21741 0.91463 0.92010 0.92187 1.44826 1.25939 1.10742 1.53985 1.19443 0.99542 0.97952 1.19969 0.90348 1.25599 1.02294 0.95902 1.02067 1.70051 1.40772 1.03106 1.45831 0.85091 0.79149 0.77434 0.77741 1.21334 1.21990 1.19577 1.21524 0.93434 0.91128 0.92773 0.88364 0.88842 0.90108 0.87379 0.86461 0.88143 0.75001 0.92438 0.89662 0.91828 0.88967 0.91211 0.99157 0.94358 0.95639 0.96074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 10.49 71.24 0.75 -0.78 16 2 C 0.05 1.14 7.59 45.16 0.34 1.49 16 3 N -0.38 -9.07 12.01 -44.78 -0.54 -9.61 16 4 O 0.09 1.93 11.06 76.98 0.85 2.78 16 5 C 0.04 0.67 7.55 25.48 0.19 0.86 16 6 C -0.08 -0.73 10.33 71.24 0.74 0.01 16 7 C -0.28 -6.30 6.24 -18.74 -0.12 -6.42 16 8 C 0.61 15.36 7.60 86.66 0.66 16.02 16 9 O -0.57 -18.60 17.11 -4.07 -0.07 -18.67 16 10 N -0.70 -15.41 5.47 -466.40 -2.55 -17.96 16 11 C 0.14 3.54 5.02 86.38 0.43 3.97 16 12 C -0.09 -2.67 2.96 -9.61 -0.03 -2.70 16 13 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 14 C -0.12 -4.08 6.53 31.99 0.21 -3.87 16 15 C 0.15 7.15 5.89 86.86 0.51 7.66 16 16 N -0.63 -31.51 3.39 -691.99 -2.35 -33.86 16 17 C -0.24 -13.32 10.27 84.04 0.86 -12.45 16 18 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 19 C -0.07 -3.71 5.49 84.86 0.47 -3.25 16 20 N -0.95 -55.88 10.09 21.65 0.22 -55.66 16 21 Si 0.98 45.29 29.55 68.60 2.03 47.32 16 22 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 C 0.14 5.18 6.75 86.73 0.59 5.77 16 26 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 27 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.10 0.85 8.11 -2.38 -0.02 0.83 16 32 H 0.41 7.66 8.45 -92.71 -0.78 6.88 16 33 H 0.06 1.66 7.93 -2.39 -0.02 1.64 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.06 2.15 8.05 -2.38 -0.02 2.13 16 36 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.07 3.84 5.87 -2.39 -0.01 3.83 16 38 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 39 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 40 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.02 0.82 7.68 -2.39 -0.02 0.80 16 Total: -1.00 -72.41 346.38 3.45 -68.96 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.26 Total: 10.39 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 5.60 Total: 6.31 kcal Atomic # 7 Polarization: -111.87 SS G_CDS: -5.22 Total: -117.09 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.78 Total: -15.89 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -72.41 3.45 -68.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028399423.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.441 kcal (2) G-P(sol) polarization free energy of solvation -72.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -2.04 seconds