Wall clock time and date at job start Tue Mar 31 2020 03:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47231 * 2 1 4 4 N 1.33686 * 126.27378 * 269.97402 * 3 2 1 5 5 C 1.30618 * 108.99657 * 180.02562 * 4 3 2 6 6 O 1.33664 * 109.15481 * 359.74867 * 5 4 3 7 7 C 1.35343 * 107.68212 * 0.40096 * 6 5 4 8 8 C 1.46726 * 126.64285 * 179.87212 * 7 6 5 9 9 O 1.21689 * 119.99990 * 179.68603 * 8 7 6 10 10 N 1.34773 * 119.99852 * 359.69153 * 8 7 6 11 11 C 1.46506 * 119.99969 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47237 * 179.72043 * 11 10 8 13 13 H 1.08999 * 110.64036 * 305.70206 * 12 11 10 14 14 C 1.55151 * 110.72034 * 182.55580 * 12 11 10 15 15 C 1.54909 * 101.58428 * 206.13622 * 14 12 11 16 16 N 1.47428 * 104.83069 * 37.00960 * 15 14 12 17 17 C 1.36934 * 125.64750 * 155.90752 * 16 15 14 18 18 H 1.08001 * 120.00251 * 179.97438 * 17 16 15 19 19 C 1.38813 * 120.00402 * 359.97305 * 17 16 15 20 20 N 1.31621 * 119.99740 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00598 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46588 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47282 * 120.00060 * 21 19 17 24 24 H 1.48504 * 109.47005 * 240.00355 * 21 19 17 25 25 C 1.47316 * 108.73690 * 335.71849 * 16 15 14 26 26 H 1.09000 * 109.46905 * 60.00118 * 1 2 3 27 27 H 1.08994 * 109.46922 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47232 * 300.00434 * 1 2 3 29 29 H 1.08993 * 109.47512 * 239.99915 * 2 1 3 30 30 H 1.08999 * 109.47093 * 119.99363 * 2 1 3 31 31 H 1.08000 * 125.42297 * 180.02562 * 5 4 3 32 32 H 0.97005 * 120.00161 * 359.72001 * 10 8 7 33 33 H 1.09001 * 109.46512 * 299.72412 * 11 10 8 34 34 H 1.08998 * 109.47174 * 59.71534 * 11 10 8 35 35 H 1.09007 * 111.00590 * 324.21091 * 14 12 11 36 36 H 1.09004 * 111.00358 * 88.02218 * 14 12 11 37 37 H 1.08995 * 110.36781 * 155.84634 * 15 14 12 38 38 H 1.08999 * 110.36352 * 278.06478 * 15 14 12 39 39 H 0.96998 * 120.00421 * 179.97438 * 20 19 17 40 40 H 1.09006 * 110.06450 * 241.87455 * 25 16 15 41 41 H 1.09004 * 109.85111 * 120.60792 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2965 2.1664 -1.0778 5 6 2.7126 3.3422 -0.6898 6 8 2.7218 3.3854 0.6461 7 6 2.3013 2.1814 1.0992 8 6 2.1568 1.7753 2.5017 9 8 1.7605 0.6574 2.7738 10 7 2.4628 2.6406 3.4887 11 6 2.3190 2.2350 4.8891 12 6 2.7355 3.3913 5.8003 13 1 3.7389 3.7356 5.5499 14 6 2.6554 2.9712 7.2917 15 6 2.4279 4.3364 7.9877 16 7 1.5499 5.0857 7.0706 17 6 0.7156 6.1121 7.4252 18 1 0.1101 6.5994 6.6753 19 6 0.6481 6.5262 8.7484 20 7 1.3863 5.9327 9.6622 21 14 -0.4906 7.9258 9.2322 22 1 -1.2068 8.4196 8.0287 23 1 -1.4770 7.4391 10.2299 24 1 0.3067 9.0309 9.8226 25 6 1.7215 4.5511 5.7087 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.9990 4.1521 -1.3443 32 1 2.7824 3.5304 3.2718 33 1 1.2796 1.9729 5.0865 34 1 2.9547 1.3714 5.0844 35 1 1.8140 2.2999 7.4640 36 1 3.5896 2.5155 7.6200 37 1 1.9377 4.1942 8.9507 38 1 3.3760 4.8580 8.1186 39 1 1.3395 6.2222 10.5867 40 1 2.1058 5.3280 5.0476 41 1 0.7674 4.1807 5.3335 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028788501.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:24 Heat of formation + Delta-G solvation = 4.408962 kcal Electronic energy + Delta-G solvation = -23233.343141 eV Core-core repulsion = 19729.526546 eV Total energy + Delta-G solvation = -3503.816596 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -43.70172 -39.68592 -37.70923 -36.03830 -34.69330 -33.17407 -32.57255 -30.38934 -29.54661 -28.23423 -25.83823 -24.70188 -23.89779 -23.25636 -21.50290 -20.81649 -20.08544 -19.74961 -18.28063 -17.12610 -16.91868 -16.66895 -16.16879 -15.46104 -15.09123 -14.80719 -14.53878 -14.35472 -13.94607 -13.62984 -13.58129 -12.94341 -12.88263 -12.55334 -11.83894 -11.77234 -11.72931 -11.55494 -11.38055 -11.26900 -11.10986 -10.97957 -10.84279 -10.52608 -10.26002 -10.09399 -10.03539 -9.82897 -9.56057 -9.36195 -9.00386 -8.68298 -6.86890 -5.68457 -3.10199 0.59260 2.17006 2.22609 2.93265 3.09489 3.37751 3.43293 3.45783 3.74798 4.42043 4.45533 4.54939 4.98219 5.10943 5.14148 5.18463 5.21344 5.27979 5.34805 5.48706 5.48884 5.63356 5.76363 5.81405 5.85931 5.97130 6.00068 6.03099 6.11107 6.26637 6.30290 6.50564 6.53694 6.65934 6.85062 7.16634 7.40338 7.47847 7.59785 7.82354 7.92653 8.33165 9.19144 9.79762 10.44376 11.35625 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024038 B = 0.003072 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.530878 B = 9111.171016 C = 9487.614048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.052 4.052 3 C 0.080 3.920 4 N -0.493 5.493 5 C 0.200 3.800 6 O -0.190 6.190 7 C -0.110 4.110 8 C 0.605 3.395 9 O -0.515 6.515 10 N -0.711 5.711 11 C 0.131 3.869 12 C -0.116 4.116 13 H 0.077 0.923 14 C -0.134 4.134 15 C 0.152 3.848 16 N -0.605 5.605 17 C -0.223 4.223 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.140 3.860 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.256 0.744 32 H 0.406 0.594 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.108 0.892 38 H 0.012 0.988 39 H 0.252 0.748 40 H 0.019 0.981 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.148 -8.574 -18.223 20.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.089 4.089 3 C -0.044 4.044 4 N -0.222 5.222 5 C -0.026 4.026 6 O -0.075 6.075 7 C -0.165 4.165 8 C 0.390 3.610 9 O -0.393 6.393 10 N -0.360 5.360 11 C 0.009 3.991 12 C -0.135 4.135 13 H 0.095 0.905 14 C -0.174 4.174 15 C 0.027 3.973 16 N -0.331 5.331 17 C -0.351 4.351 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.571 5.571 21 Si 0.745 3.255 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.014 3.986 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.272 0.728 32 H 0.241 0.759 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.125 0.875 38 H 0.030 0.970 39 H 0.062 0.938 40 H 0.037 0.963 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 3.743 -9.354 -18.390 20.969 hybrid contribution -0.151 1.763 0.578 1.861 sum 3.592 -7.591 -17.812 19.692 Atomic orbital electron populations 1.21640 0.93729 1.02330 1.02095 1.20164 0.96727 0.87699 1.04347 1.22069 0.97736 0.98282 0.86326 1.70338 1.17015 1.03346 1.31471 1.28342 0.97210 0.97560 0.79451 1.84513 1.64728 1.33830 1.24458 1.23037 1.11924 0.85079 0.96468 1.16322 0.78439 0.84980 0.81307 1.90862 1.46967 1.19635 1.81838 1.46020 1.66237 1.17035 1.06754 1.21591 1.02262 0.97550 0.77735 1.22461 0.99733 0.95080 0.96215 0.90483 1.23008 1.00568 1.00799 0.92986 1.21931 0.93393 0.85899 0.96071 1.44583 1.48000 1.38956 1.01551 1.19126 1.15526 1.07507 0.92969 0.90489 1.24793 1.00038 1.00039 0.95836 1.69801 1.42872 1.43147 1.01248 0.85995 0.79892 0.81409 0.78186 1.20542 1.21691 1.21740 1.21394 0.95192 0.92756 0.89241 0.92762 0.91639 0.92241 0.90138 0.88136 0.72817 0.75876 0.90674 0.91080 0.91735 0.92023 0.87473 0.96997 0.93751 0.96346 0.95719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.89 37.16 0.37 -1.04 16 2 C -0.05 -0.55 5.92 -27.88 -0.17 -0.72 16 3 C 0.08 0.96 6.41 -82.47 -0.53 0.44 16 4 N -0.49 -5.48 11.26 -10.88 -0.12 -5.60 16 5 C 0.20 1.65 13.21 52.25 0.69 2.34 16 6 O -0.19 -2.00 10.57 4.43 0.05 -1.95 16 7 C -0.11 -1.37 7.18 -36.84 -0.26 -1.63 16 8 C 0.60 8.34 7.79 -12.83 -0.10 8.24 16 9 O -0.52 -8.10 14.79 5.20 0.08 -8.02 16 10 N -0.71 -9.21 5.43 -61.60 -0.33 -9.54 16 11 C 0.13 1.85 5.00 -4.04 -0.02 1.83 16 12 C -0.12 -1.86 2.98 -88.79 -0.26 -2.12 16 13 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 14 C -0.13 -2.41 6.54 -24.59 -0.16 -2.57 16 15 C 0.15 3.60 5.89 -2.53 -0.01 3.59 16 16 N -0.60 -15.28 3.40 -169.83 -0.58 -15.86 16 17 C -0.22 -6.19 10.28 -15.06 -0.15 -6.34 16 18 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 19 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 20 N -0.92 -26.66 10.09 55.49 0.56 -26.10 16 21 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.14 2.81 6.67 -2.90 -0.02 2.79 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.10 1.16 6.47 -51.93 -0.34 0.82 16 31 H 0.26 0.69 8.06 -52.49 -0.42 0.27 16 32 H 0.41 4.76 8.20 -40.82 -0.33 4.42 16 33 H 0.07 1.15 8.00 -51.93 -0.42 0.74 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 1.15 8.05 -51.92 -0.42 0.73 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.11 2.88 5.87 -51.93 -0.31 2.57 16 38 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.02 0.50 7.73 -51.93 -0.40 0.10 16 LS Contribution 341.44 15.07 5.15 5.15 Total: -1.00 -32.56 341.44 -6.94 -39.50 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.98 Total: 1.14 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -0.73 Total: 4.36 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -0.47 Total: -57.11 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.12 Total: -9.98 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.56 -6.94 -39.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028788501.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.913 kcal (2) G-P(sol) polarization free energy of solvation -32.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds