Wall clock time and date at job start Tue Mar 31 2020 03:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47231 * 2 1 4 4 N 1.33686 * 126.27378 * 269.97402 * 3 2 1 5 5 C 1.30618 * 108.99657 * 180.02562 * 4 3 2 6 6 O 1.33664 * 109.15481 * 359.74867 * 5 4 3 7 7 C 1.35343 * 107.68212 * 0.40096 * 6 5 4 8 8 C 1.46726 * 126.64285 * 179.87212 * 7 6 5 9 9 O 1.21689 * 119.99990 * 179.68603 * 8 7 6 10 10 N 1.34773 * 119.99852 * 359.69153 * 8 7 6 11 11 C 1.46506 * 119.99969 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47237 * 179.72043 * 11 10 8 13 13 H 1.08999 * 110.64036 * 305.70206 * 12 11 10 14 14 C 1.55151 * 110.72034 * 182.55580 * 12 11 10 15 15 C 1.54909 * 101.58428 * 206.13622 * 14 12 11 16 16 N 1.47428 * 104.83069 * 37.00960 * 15 14 12 17 17 C 1.36934 * 125.64750 * 155.90752 * 16 15 14 18 18 H 1.08001 * 120.00251 * 179.97438 * 17 16 15 19 19 C 1.38813 * 120.00402 * 359.97305 * 17 16 15 20 20 N 1.31621 * 119.99740 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00598 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46588 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47282 * 120.00060 * 21 19 17 24 24 H 1.48504 * 109.47005 * 240.00355 * 21 19 17 25 25 C 1.47316 * 108.73690 * 335.71849 * 16 15 14 26 26 H 1.09000 * 109.46905 * 60.00118 * 1 2 3 27 27 H 1.08994 * 109.46922 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47232 * 300.00434 * 1 2 3 29 29 H 1.08993 * 109.47512 * 239.99915 * 2 1 3 30 30 H 1.08999 * 109.47093 * 119.99363 * 2 1 3 31 31 H 1.08000 * 125.42297 * 180.02562 * 5 4 3 32 32 H 0.97005 * 120.00161 * 359.72001 * 10 8 7 33 33 H 1.09001 * 109.46512 * 299.72412 * 11 10 8 34 34 H 1.08998 * 109.47174 * 59.71534 * 11 10 8 35 35 H 1.09007 * 111.00590 * 324.21091 * 14 12 11 36 36 H 1.09004 * 111.00358 * 88.02218 * 14 12 11 37 37 H 1.08995 * 110.36781 * 155.84634 * 15 14 12 38 38 H 1.08999 * 110.36352 * 278.06478 * 15 14 12 39 39 H 0.96998 * 120.00421 * 179.97438 * 20 19 17 40 40 H 1.09006 * 110.06450 * 241.87455 * 25 16 15 41 41 H 1.09004 * 109.85111 * 120.60792 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2965 2.1664 -1.0778 5 6 2.7126 3.3422 -0.6898 6 8 2.7218 3.3854 0.6461 7 6 2.3013 2.1814 1.0992 8 6 2.1568 1.7753 2.5017 9 8 1.7605 0.6574 2.7738 10 7 2.4628 2.6406 3.4887 11 6 2.3190 2.2350 4.8891 12 6 2.7355 3.3913 5.8003 13 1 3.7389 3.7356 5.5499 14 6 2.6554 2.9712 7.2917 15 6 2.4279 4.3364 7.9877 16 7 1.5499 5.0857 7.0706 17 6 0.7156 6.1121 7.4252 18 1 0.1101 6.5994 6.6753 19 6 0.6481 6.5262 8.7484 20 7 1.3863 5.9327 9.6622 21 14 -0.4906 7.9258 9.2322 22 1 -1.2068 8.4196 8.0287 23 1 -1.4770 7.4391 10.2299 24 1 0.3067 9.0309 9.8226 25 6 1.7215 4.5511 5.7087 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.9990 4.1521 -1.3443 32 1 2.7824 3.5304 3.2718 33 1 1.2796 1.9729 5.0865 34 1 2.9547 1.3714 5.0844 35 1 1.8140 2.2999 7.4640 36 1 3.5896 2.5155 7.6200 37 1 1.9377 4.1942 8.9507 38 1 3.3760 4.8580 8.1186 39 1 1.3395 6.2222 10.5867 40 1 2.1058 5.3280 5.0476 41 1 0.7674 4.1807 5.3335 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028788501.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:22 Heat of formation + Delta-G solvation = -19.850566 kcal Electronic energy + Delta-G solvation = -23234.395113 eV Core-core repulsion = 19729.526546 eV Total energy + Delta-G solvation = -3504.868568 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.49275 -40.78594 -39.25485 -36.92134 -35.99264 -34.35652 -33.96318 -31.84377 -30.84689 -29.71311 -27.42562 -25.99899 -24.89873 -24.35500 -22.52312 -22.04179 -21.56331 -21.09428 -19.33828 -18.77856 -17.94868 -17.50712 -17.35914 -16.82650 -16.57187 -15.91509 -15.84411 -15.59755 -15.22297 -14.86119 -14.42301 -14.30767 -14.27968 -13.72840 -13.56275 -13.39079 -13.16679 -12.81774 -12.71090 -12.52883 -12.23167 -12.12042 -11.98524 -11.96918 -11.86523 -11.84274 -11.60729 -11.40434 -11.14957 -10.75476 -10.37806 -9.93481 -8.88933 -7.78333 -5.22445 -0.25508 1.39054 1.41054 1.46193 1.46977 1.57211 1.94401 2.12614 2.48787 3.10168 3.31250 3.57288 3.61403 3.69497 3.81606 3.95441 4.05241 4.27790 4.31361 4.39171 4.43005 4.47600 4.64055 4.68412 4.74953 4.79709 4.89677 4.97814 5.01178 5.08759 5.12993 5.20956 5.22853 5.33302 5.37736 5.47118 5.66312 5.82558 6.23034 6.31790 6.54246 6.90951 7.10874 7.78209 8.41458 9.23642 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024038 B = 0.003072 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.530878 B = 9111.171016 C = 9487.614048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.053 4.053 3 C 0.078 3.922 4 N -0.521 5.521 5 C 0.227 3.773 6 O -0.193 6.193 7 C -0.136 4.136 8 C 0.606 3.394 9 O -0.541 6.541 10 N -0.706 5.706 11 C 0.144 3.856 12 C -0.095 4.095 13 H 0.096 0.904 14 C -0.121 4.121 15 C 0.151 3.849 16 N -0.629 5.629 17 C -0.239 4.239 18 H 0.079 0.921 19 C -0.067 4.067 20 N -0.948 5.948 21 Si 0.979 3.021 22 H -0.268 1.268 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.136 3.864 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.039 0.961 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.308 0.692 32 H 0.413 0.587 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.071 0.929 38 H -0.010 1.010 39 H 0.247 0.753 40 H 0.026 0.974 41 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.616 -8.427 -20.353 22.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.091 4.091 3 C -0.046 4.046 4 N -0.250 5.250 5 C 0.003 3.997 6 O -0.080 6.080 7 C -0.191 4.191 8 C 0.392 3.608 9 O -0.421 6.421 10 N -0.356 5.356 11 C 0.020 3.980 12 C -0.114 4.114 13 H 0.114 0.886 14 C -0.160 4.160 15 C 0.026 3.974 16 N -0.355 5.355 17 C -0.368 4.368 18 H 0.096 0.904 19 C -0.260 4.260 20 N -0.598 5.598 21 Si 0.808 3.192 22 H -0.192 1.192 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.011 3.989 26 H 0.075 0.925 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.323 0.677 32 H 0.250 0.750 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.008 0.992 39 H 0.057 0.943 40 H 0.044 0.956 41 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 4.216 -9.213 -20.557 22.918 hybrid contribution -0.277 1.765 1.123 2.110 sum 3.939 -7.447 -19.434 21.182 Atomic orbital electron populations 1.21592 0.93326 1.03129 1.01176 1.20193 0.97022 0.87424 1.04421 1.22314 0.96882 0.98723 0.86654 1.70379 1.18763 1.04540 1.31304 1.29600 0.93540 0.97672 0.78935 1.84516 1.64926 1.33006 1.25537 1.22707 1.14385 0.86171 0.95854 1.16438 0.77828 0.84618 0.81944 1.90842 1.48142 1.20660 1.82460 1.45894 1.66200 1.17339 1.06172 1.21357 1.01742 0.96904 0.77964 1.22295 0.99543 0.94150 0.95429 0.88588 1.22844 1.02153 0.97456 0.93512 1.21736 0.91612 0.88655 0.95356 1.44910 1.47806 1.38819 1.03990 1.19480 1.15869 1.08214 0.93269 0.90359 1.25623 1.01797 1.02630 0.95943 1.70056 1.44231 1.44361 1.01143 0.84995 0.77924 0.78405 0.77915 1.19223 1.21827 1.21831 1.21565 0.96245 0.94172 0.86877 0.92462 0.90053 0.94200 0.88776 0.89249 0.67723 0.75050 0.91995 0.89584 0.91632 0.89012 0.91083 0.99205 0.94325 0.95569 0.96076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.89 71.98 0.71 -1.90 16 2 C -0.05 -1.09 5.92 29.85 0.18 -0.92 16 3 C 0.08 1.79 6.41 41.84 0.27 2.06 16 4 N -0.52 -10.43 11.26 -303.12 -3.41 -13.84 16 5 C 0.23 3.02 13.21 130.42 1.72 4.74 16 6 O -0.19 -3.63 10.57 -7.08 -0.07 -3.71 16 7 C -0.14 -3.23 7.18 24.05 0.17 -3.06 16 8 C 0.61 16.17 7.79 86.46 0.67 16.85 16 9 O -0.54 -16.84 14.79 -4.31 -0.06 -16.91 16 10 N -0.71 -17.20 5.43 -467.03 -2.53 -19.73 16 11 C 0.14 3.78 5.00 86.38 0.43 4.21 16 12 C -0.09 -2.88 2.98 -9.61 -0.03 -2.91 16 13 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 14 C -0.12 -4.18 6.54 31.98 0.21 -3.97 16 15 C 0.15 7.30 5.89 86.85 0.51 7.81 16 16 N -0.63 -32.08 3.40 -691.21 -2.35 -34.44 16 17 C -0.24 -13.43 10.28 84.03 0.86 -12.57 16 18 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 19 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 20 N -0.95 -56.35 10.09 21.65 0.22 -56.13 16 21 Si 0.98 45.64 29.55 68.60 2.03 47.67 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 25 C 0.14 5.35 6.67 86.68 0.58 5.93 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.09 2.05 6.47 -2.39 -0.02 2.04 16 31 H 0.31 0.14 8.06 -2.91 -0.02 0.12 16 32 H 0.41 8.88 8.20 -92.70 -0.76 8.12 16 33 H 0.06 1.83 8.00 -2.39 -0.02 1.81 16 34 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.06 2.27 8.05 -2.38 -0.02 2.25 16 36 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 37 H 0.07 3.96 5.87 -2.39 -0.01 3.94 16 38 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 39 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 40 H 0.03 0.99 8.14 -2.38 -0.02 0.98 16 41 H 0.02 0.85 7.73 -2.39 -0.02 0.83 16 Total: -1.00 -72.46 341.44 0.85 -71.61 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.28 Total: 12.56 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 6.76 Total: 12.91 kcal Atomic # 7 Polarization: -116.06 SS G_CDS: -8.08 Total: -124.14 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.14 Total: -20.62 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -72.46 0.85 -71.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028788501.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.760 kcal (2) G-P(sol) polarization free energy of solvation -72.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds