Wall clock time and date at job start Tue Mar 31 2020 03:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46968 * 2 1 4 4 C 1.50710 * 109.46829 * 180.02562 * 3 2 1 5 5 N 1.29934 * 125.37838 * 90.00198 * 4 3 2 6 6 C 1.36067 * 108.47551 * 179.73134 * 5 4 3 7 7 C 1.47416 * 126.44783 * 179.97438 * 6 5 4 8 8 O 1.21614 * 120.00363 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99723 * 359.97438 * 7 6 5 10 10 C 1.46509 * 119.99653 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46911 * 179.97438 * 10 9 7 12 12 C 1.53938 * 113.74367 * 273.74034 * 11 10 9 13 13 N 1.47808 * 86.03637 * 222.08651 * 12 11 10 14 14 C 1.36946 * 134.45621 * 204.64464 * 13 12 11 15 15 H 1.07998 * 120.00171 * 179.86479 * 14 13 12 16 16 C 1.38817 * 119.99600 * 359.86664 * 14 13 12 17 17 N 1.31612 * 120.00287 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99661 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47085 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47188 * 119.99707 * 18 16 14 21 21 H 1.48498 * 109.47200 * 239.99920 * 18 16 14 22 22 C 1.47576 * 91.05110 * 24.54920 * 13 12 11 23 23 C 1.36091 * 107.10305 * 359.97438 * 6 5 4 24 24 O 1.34047 * 125.37563 * 269.68701 * 4 3 2 25 25 H 1.09006 * 109.47056 * 300.00424 * 1 2 3 26 26 H 1.09000 * 109.46715 * 59.99791 * 1 2 3 27 27 H 1.08997 * 109.46988 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47147 * 240.00060 * 2 1 3 29 29 H 1.09003 * 109.47128 * 119.99571 * 2 1 3 30 30 H 1.08993 * 109.47401 * 60.00084 * 3 2 1 31 31 H 1.08996 * 109.47133 * 299.99527 * 3 2 1 32 32 H 0.96999 * 120.00324 * 359.97438 * 9 7 6 33 33 H 1.08994 * 109.47172 * 299.99996 * 10 9 7 34 34 H 1.08998 * 109.47017 * 60.00002 * 10 9 7 35 35 H 1.09000 * 112.94264 * 45.33872 * 11 10 9 36 36 H 1.09005 * 113.77076 * 336.34845 * 12 11 10 37 37 H 1.08999 * 113.77117 * 107.74634 * 12 11 10 38 38 H 0.96998 * 120.00139 * 180.02562 * 17 16 14 39 39 H 1.09001 * 113.77106 * 221.15202 * 22 13 12 40 40 H 1.09003 * 113.76854 * 89.75634 * 22 13 12 41 41 H 1.07994 * 126.52402 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 7 4.2989 1.4426 -1.0604 6 6 5.6010 1.4486 -0.6653 7 6 6.7833 1.4503 -1.5458 8 8 7.9001 1.4554 -1.0643 9 7 6.6266 1.4453 -2.8844 10 6 7.8017 1.4464 -3.7594 11 6 7.3492 1.4393 -5.2210 12 6 7.0834 0.0301 -5.7806 13 7 7.7729 0.4967 -7.0019 14 6 7.7393 0.1312 -8.3213 15 1 8.3582 0.6471 -9.0405 16 6 6.9097 -0.9024 -8.7342 17 7 6.1558 -1.5313 -7.8577 18 14 6.8633 -1.4004 -10.5340 19 1 7.7976 -0.5447 -11.3087 20 1 7.2713 -2.8223 -10.6648 21 1 5.4847 -1.2307 -11.0592 22 6 8.5098 1.5155 -6.2294 23 6 5.6063 1.4526 0.6956 24 8 4.3236 1.4483 1.0920 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 5.7360 1.4401 -3.2685 33 1 8.3969 2.3391 -3.5673 34 1 8.4031 0.5592 -3.5613 35 1 6.5469 2.1495 -5.4208 36 1 7.6149 -0.7605 -5.2509 37 1 6.0265 -0.1916 -5.9289 38 1 5.5764 -2.2538 -8.1462 39 1 8.5898 2.4777 -6.7353 40 1 9.4613 1.1622 -5.8318 41 1 6.4766 1.4573 1.3349 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032125543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:19 Heat of formation + Delta-G solvation = 26.597965 kcal Electronic energy + Delta-G solvation = -22577.727766 eV Core-core repulsion = 19074.873358 eV Total energy + Delta-G solvation = -3502.854408 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.61867 -39.45459 -37.91766 -35.79146 -34.87558 -34.33596 -32.13901 -30.94416 -28.90701 -27.45276 -26.12305 -24.77202 -23.85372 -22.60842 -21.90203 -21.21363 -20.45440 -19.16829 -17.99873 -16.97849 -16.75285 -16.50496 -15.91287 -15.44719 -15.21833 -15.05957 -14.71606 -14.25123 -13.93399 -13.68281 -13.60553 -13.24949 -12.88840 -12.57737 -12.34904 -12.18271 -11.77386 -11.41258 -11.35889 -11.29176 -11.12346 -11.00285 -10.96509 -10.71574 -10.56538 -10.19653 -9.80482 -9.72731 -9.41444 -9.22486 -8.79516 -8.77129 -6.85522 -5.74654 -3.06878 0.96000 1.85773 2.35224 3.19197 3.33041 3.40228 3.45404 3.48045 3.67376 4.47055 4.48891 4.55670 4.61105 4.75278 4.90653 5.11072 5.18688 5.23472 5.34047 5.36714 5.36926 5.38668 5.45616 5.65282 5.68413 5.75840 5.86495 5.88254 5.91084 6.05824 6.25405 6.37636 6.56294 6.65560 6.76543 7.25189 7.26802 7.38292 7.58319 7.69889 8.00217 8.26059 9.06775 9.72986 10.62232 11.42557 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.003151 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.190927 B = 8883.901309 C =10454.863281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.023 4.023 4 C 0.197 3.803 5 N -0.455 5.455 6 C -0.066 4.066 7 C 0.597 3.403 8 O -0.545 6.545 9 N -0.701 5.701 10 C 0.129 3.871 11 C -0.153 4.153 12 C 0.169 3.831 13 N -0.613 5.613 14 C -0.222 4.222 15 H 0.080 0.920 16 C -0.009 4.009 17 N -0.921 5.921 18 Si 0.912 3.088 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.290 1.290 22 C 0.129 3.871 23 C 0.006 3.994 24 O -0.198 6.198 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.411 0.589 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.027 0.973 37 H 0.073 0.927 38 H 0.253 0.747 39 H 0.046 0.954 40 H 0.036 0.964 41 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.127 6.770 19.774 22.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.061 4.061 4 C -0.012 4.012 5 N -0.185 5.185 6 C -0.186 4.186 7 C 0.382 3.618 8 O -0.423 6.423 9 N -0.350 5.350 10 C 0.005 3.995 11 C -0.173 4.173 12 C 0.043 3.957 13 N -0.339 5.339 14 C -0.350 4.350 15 H 0.098 0.902 16 C -0.206 4.206 17 N -0.568 5.568 18 Si 0.742 3.258 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.217 1.217 22 C 0.002 3.998 23 C -0.067 4.067 24 O -0.084 6.084 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.127 0.873 32 H 0.247 0.753 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.045 0.955 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -8.649 6.587 19.166 22.035 hybrid contribution 0.019 -0.470 -0.459 0.658 sum -8.630 6.117 18.707 21.491 Atomic orbital electron populations 1.21752 0.94511 1.02421 1.02186 1.21564 0.96630 0.94556 1.03464 1.20245 0.80652 0.99784 1.05464 1.26347 0.96377 1.00180 0.78295 1.70800 1.00714 1.17170 1.29846 1.21892 0.92204 1.11414 0.93096 1.16755 0.86019 0.76890 0.82159 1.90810 1.24251 1.51673 1.75576 1.45888 1.11553 1.72542 1.05058 1.21540 0.86934 1.01954 0.89041 1.23811 1.00428 1.02342 0.90750 1.22352 0.98986 0.89827 0.84491 1.45988 1.46889 1.38396 1.02654 1.19081 1.20381 1.13669 0.81841 0.90199 1.24788 0.99438 0.98427 0.97897 1.69825 1.29247 1.25491 1.32269 0.86050 0.77345 0.78101 0.84293 1.20477 1.21776 1.21700 1.22484 0.93450 0.93508 0.90317 1.25266 0.84771 1.00955 0.95738 1.84379 1.16707 1.69323 1.37986 0.92492 0.92110 0.92080 0.90627 0.91451 0.88761 0.87263 0.75316 0.91648 0.91119 0.89114 0.95490 0.90910 0.93724 0.93628 0.94616 0.75350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 3 C -0.02 -0.16 5.84 -27.88 -0.16 -0.32 16 4 C 0.20 2.07 7.56 -13.08 -0.10 1.97 16 5 N -0.46 -5.98 11.06 -7.65 -0.08 -6.06 16 6 C -0.07 -0.90 6.99 -83.02 -0.58 -1.48 16 7 C 0.60 9.43 7.81 -12.52 -0.10 9.33 16 8 O -0.54 -9.76 16.89 5.26 0.09 -9.68 16 9 N -0.70 -10.87 5.55 -61.38 -0.34 -11.21 16 10 C 0.13 2.10 5.51 -4.04 -0.02 2.08 16 11 C -0.15 -2.84 3.93 -89.70 -0.35 -3.19 16 12 C 0.17 3.98 7.08 -2.84 -0.02 3.96 16 13 N -0.61 -15.96 3.70 -177.74 -0.66 -16.62 16 14 C -0.22 -6.33 10.70 -15.05 -0.16 -6.49 16 15 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 16 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 17 N -0.92 -27.61 11.39 55.49 0.63 -26.98 16 18 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 C 0.13 2.64 8.51 -2.97 -0.03 2.62 16 23 C 0.01 0.07 11.95 29.96 0.36 0.43 16 24 O -0.20 -2.05 10.73 6.52 0.07 -1.98 16 25 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.41 6.14 8.20 -40.82 -0.33 5.81 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.23 7.87 -51.93 -0.41 0.82 16 35 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 36 H 0.03 0.66 7.92 -51.93 -0.41 0.25 16 37 H 0.07 1.89 7.17 -51.93 -0.37 1.52 16 38 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.04 0.71 8.10 -51.93 -0.42 0.28 16 41 H 0.23 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 352.28 15.07 5.31 5.31 Total: -1.00 -34.12 352.28 -7.20 -41.32 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.14 Total: 1.41 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -1.05 Total: 7.14 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: -0.45 Total: -60.88 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.16 Total: -11.65 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.12 -7.20 -41.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032125543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.919 kcal (2) G-P(sol) polarization free energy of solvation -34.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds