Wall clock time and date at job start Tue Mar 31 2020 03:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46968 * 2 1 4 4 C 1.50710 * 109.46829 * 180.02562 * 3 2 1 5 5 N 1.29934 * 125.37838 * 90.00198 * 4 3 2 6 6 C 1.36067 * 108.47551 * 179.73134 * 5 4 3 7 7 C 1.47416 * 126.44783 * 179.97438 * 6 5 4 8 8 O 1.21614 * 120.00363 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99723 * 359.97438 * 7 6 5 10 10 C 1.46509 * 119.99653 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46911 * 179.97438 * 10 9 7 12 12 C 1.53938 * 113.74367 * 273.74034 * 11 10 9 13 13 N 1.47808 * 86.03637 * 222.08651 * 12 11 10 14 14 C 1.36946 * 134.45621 * 204.64464 * 13 12 11 15 15 H 1.07998 * 120.00171 * 179.86479 * 14 13 12 16 16 C 1.38817 * 119.99600 * 359.86664 * 14 13 12 17 17 N 1.31612 * 120.00287 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99661 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47085 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47188 * 119.99707 * 18 16 14 21 21 H 1.48498 * 109.47200 * 239.99920 * 18 16 14 22 22 C 1.47576 * 91.05110 * 24.54920 * 13 12 11 23 23 C 1.36091 * 107.10305 * 359.97438 * 6 5 4 24 24 O 1.34047 * 125.37563 * 269.68701 * 4 3 2 25 25 H 1.09006 * 109.47056 * 300.00424 * 1 2 3 26 26 H 1.09000 * 109.46715 * 59.99791 * 1 2 3 27 27 H 1.08997 * 109.46988 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47147 * 240.00060 * 2 1 3 29 29 H 1.09003 * 109.47128 * 119.99571 * 2 1 3 30 30 H 1.08993 * 109.47401 * 60.00084 * 3 2 1 31 31 H 1.08996 * 109.47133 * 299.99527 * 3 2 1 32 32 H 0.96999 * 120.00324 * 359.97438 * 9 7 6 33 33 H 1.08994 * 109.47172 * 299.99996 * 10 9 7 34 34 H 1.08998 * 109.47017 * 60.00002 * 10 9 7 35 35 H 1.09000 * 112.94264 * 45.33872 * 11 10 9 36 36 H 1.09005 * 113.77076 * 336.34845 * 12 11 10 37 37 H 1.08999 * 113.77117 * 107.74634 * 12 11 10 38 38 H 0.96998 * 120.00139 * 180.02562 * 17 16 14 39 39 H 1.09001 * 113.77106 * 221.15202 * 22 13 12 40 40 H 1.09003 * 113.76854 * 89.75634 * 22 13 12 41 41 H 1.07994 * 126.52402 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 7 4.2989 1.4426 -1.0604 6 6 5.6010 1.4486 -0.6653 7 6 6.7833 1.4503 -1.5458 8 8 7.9001 1.4554 -1.0643 9 7 6.6266 1.4453 -2.8844 10 6 7.8017 1.4464 -3.7594 11 6 7.3492 1.4393 -5.2210 12 6 7.0834 0.0301 -5.7806 13 7 7.7729 0.4967 -7.0019 14 6 7.7393 0.1312 -8.3213 15 1 8.3582 0.6471 -9.0405 16 6 6.9097 -0.9024 -8.7342 17 7 6.1558 -1.5313 -7.8577 18 14 6.8633 -1.4004 -10.5340 19 1 7.7976 -0.5447 -11.3087 20 1 7.2713 -2.8223 -10.6648 21 1 5.4847 -1.2307 -11.0592 22 6 8.5098 1.5155 -6.2294 23 6 5.6063 1.4526 0.6956 24 8 4.3236 1.4483 1.0920 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 5.7360 1.4401 -3.2685 33 1 8.3969 2.3391 -3.5673 34 1 8.4031 0.5592 -3.5613 35 1 6.5469 2.1495 -5.4208 36 1 7.6149 -0.7605 -5.2509 37 1 6.0265 -0.1916 -5.9289 38 1 5.5764 -2.2538 -8.1462 39 1 8.5898 2.4777 -6.7353 40 1 9.4613 1.1622 -5.8318 41 1 6.4766 1.4573 1.3349 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032125543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:18 Heat of formation + Delta-G solvation = 1.174135 kcal Electronic energy + Delta-G solvation = -22578.830226 eV Core-core repulsion = 19074.873358 eV Total energy + Delta-G solvation = -3503.956868 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.48561 -40.77355 -39.60136 -36.43084 -35.86196 -35.60888 -34.15960 -31.75898 -30.60507 -28.23902 -27.71269 -26.56438 -25.12509 -23.60904 -23.15410 -22.06023 -21.59736 -20.70393 -19.14235 -18.72089 -17.84843 -17.49222 -17.22821 -16.99028 -16.31270 -16.06793 -15.85565 -15.68732 -15.40212 -14.85805 -14.72734 -14.36893 -14.18129 -14.06832 -13.32674 -13.12064 -13.01819 -12.90130 -12.75215 -12.54646 -12.43354 -12.24325 -12.08239 -11.90657 -11.85369 -11.63762 -11.60612 -11.39269 -11.18689 -10.88434 -10.25399 -9.95642 -8.92946 -7.91045 -5.24805 0.04972 0.92069 1.45127 1.46457 1.55268 1.56772 2.04897 2.20168 2.46991 2.82273 3.29637 3.37604 3.63919 3.74805 3.77934 4.04062 4.04254 4.09860 4.29607 4.33404 4.51437 4.56580 4.60049 4.72330 4.74600 4.78369 4.83077 4.84457 4.92803 5.02176 5.07427 5.24367 5.25576 5.28272 5.32985 5.45726 5.52851 5.62611 5.92900 6.28060 6.57079 6.91258 7.03438 7.60132 8.55742 9.26121 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.003151 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.190927 B = 8883.901309 C =10454.863281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.022 4.022 4 C 0.204 3.796 5 N -0.486 5.486 6 C -0.102 4.102 7 C 0.598 3.402 8 O -0.570 6.570 9 N -0.702 5.702 10 C 0.141 3.859 11 C -0.117 4.117 12 C 0.166 3.834 13 N -0.646 5.646 14 C -0.235 4.235 15 H 0.085 0.915 16 C -0.070 4.070 17 N -0.954 5.954 18 Si 0.980 3.020 19 H -0.264 1.264 20 H -0.294 1.294 21 H -0.290 1.290 22 C 0.129 3.871 23 C 0.030 3.970 24 O -0.193 6.193 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.413 0.587 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.012 0.988 37 H 0.041 0.959 38 H 0.248 0.752 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.506 8.059 20.794 24.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.060 4.060 4 C -0.006 4.006 5 N -0.216 5.216 6 C -0.221 4.221 7 C 0.385 3.615 8 O -0.451 6.451 9 N -0.351 5.351 10 C 0.017 3.983 11 C -0.137 4.137 12 C 0.040 3.960 13 N -0.372 5.372 14 C -0.363 4.363 15 H 0.103 0.897 16 C -0.263 4.263 17 N -0.604 5.604 18 Si 0.808 3.192 19 H -0.189 1.189 20 H -0.221 1.221 21 H -0.217 1.217 22 C 0.004 3.996 23 C -0.044 4.044 24 O -0.078 6.078 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.141 0.859 31 H 0.133 0.867 32 H 0.249 0.751 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.118 0.882 36 H 0.030 0.970 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -9.016 7.909 20.189 23.483 hybrid contribution 0.126 -0.859 -0.699 1.115 sum -8.890 7.050 19.490 22.552 Atomic orbital electron populations 1.21734 0.93198 1.02617 1.03009 1.21522 0.97686 0.94298 1.02425 1.20490 0.78212 1.00101 1.07173 1.27069 0.97504 0.98331 0.77703 1.70760 1.00849 1.18709 1.31244 1.21709 0.91871 1.14589 0.93899 1.16989 0.86450 0.75971 0.82120 1.90784 1.25367 1.52998 1.75931 1.45841 1.11335 1.72684 1.05241 1.21322 0.87165 1.02309 0.87514 1.23410 0.99738 0.98657 0.91878 1.22248 0.96728 0.92396 0.84606 1.46407 1.48403 1.39763 1.02636 1.19499 1.19891 1.13485 0.83463 0.89702 1.25663 0.99549 0.98859 1.02187 1.70019 1.30175 1.26006 1.34157 0.84984 0.77347 0.77423 0.79412 1.18853 1.22093 1.21694 1.22686 0.94096 0.92915 0.89909 1.25784 0.85590 0.98005 0.95059 1.84426 1.16516 1.69071 1.37827 0.90914 0.92031 0.92246 0.92864 0.91343 0.85889 0.86667 0.75071 0.89792 0.92219 0.88174 0.96990 0.94061 0.94311 0.91762 0.93158 0.72567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 71.98 0.71 -0.59 16 2 C -0.12 -1.46 5.92 30.60 0.18 -1.28 16 3 C -0.02 -0.25 5.84 29.85 0.17 -0.08 16 4 C 0.20 3.98 7.56 88.39 0.67 4.65 16 5 N -0.49 -12.51 11.06 -293.03 -3.24 -15.75 16 6 C -0.10 -2.71 6.99 40.41 0.28 -2.43 16 7 C 0.60 18.66 7.81 86.66 0.68 19.34 16 8 O -0.57 -20.09 16.89 -4.08 -0.07 -20.16 16 9 N -0.70 -21.58 5.55 -466.36 -2.59 -24.17 16 10 C 0.14 4.46 5.51 86.38 0.48 4.93 16 11 C -0.12 -4.26 3.93 -10.14 -0.04 -4.30 16 12 C 0.17 8.02 7.08 86.44 0.61 8.63 16 13 N -0.65 -33.78 3.70 -716.24 -2.65 -36.43 16 14 C -0.24 -13.46 10.70 84.03 0.90 -12.56 16 15 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 16 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 17 N -0.95 -58.79 11.39 21.65 0.25 -58.55 16 18 Si 0.98 46.44 29.55 68.60 2.03 48.47 16 19 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 22 C 0.13 5.12 8.51 86.48 0.74 5.86 16 23 C 0.03 0.59 11.95 67.32 0.80 1.40 16 24 O -0.19 -3.58 10.73 0.42 0.00 -3.58 16 25 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.41 12.41 8.20 -92.71 -0.76 11.65 16 33 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.06 2.05 7.87 -2.39 -0.02 2.03 16 35 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 36 H 0.01 0.62 7.92 -2.38 -0.02 0.60 16 37 H 0.04 2.24 7.17 -2.39 -0.02 2.22 16 38 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 39 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 41 H 0.26 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -74.47 352.28 0.65 -73.82 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.27 Total: 16.36 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: 6.65 Total: 19.98 kcal Atomic # 7 Polarization: -126.66 SS G_CDS: -8.24 Total: -134.90 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.06 Total: -23.74 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -74.47 0.65 -73.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032125543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.994 kcal (2) G-P(sol) polarization free energy of solvation -74.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds