Wall clock time and date at job start Tue Mar 31 2020 03:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 110.85615 * 2 1 4 4 O 1.21273 * 120.00199 * 114.29584 * 3 2 1 5 5 N 1.34776 * 119.99815 * 294.29135 * 3 2 1 6 6 C 1.47874 * 126.94454 * 4.98713 * 5 3 2 7 7 C 1.56020 * 105.10048 * 181.97708 * 6 5 3 8 8 H 1.09005 * 116.24594 * 158.84153 * 7 6 5 9 9 C 1.57076 * 99.60870 * 32.80817 * 7 6 5 10 10 C 1.49288 * 126.94502 * 184.67242 * 5 3 2 11 11 H 1.09007 * 116.15197 * 16.72250 * 10 5 3 12 12 C 1.56018 * 104.09294 * 246.72082 * 10 5 3 13 13 N 1.49246 * 105.36886 * 288.93607 * 12 10 5 14 14 C 1.36940 * 127.75354 * 182.18629 * 13 12 10 15 15 H 1.07996 * 119.99725 * 179.51439 * 14 13 12 16 16 C 1.38808 * 119.99642 * 359.50886 * 14 13 12 17 17 N 1.31611 * 120.00468 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99802 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46848 * 90.00150 * 18 16 14 20 20 H 1.48497 * 109.47434 * 210.00190 * 18 16 14 21 21 H 1.48500 * 109.47366 * 330.00643 * 18 16 14 22 22 C 1.54482 * 110.96942 * 123.78809 * 2 1 3 23 23 N 1.46859 * 105.42523 * 92.71282 * 22 2 1 24 24 C 1.34421 * 111.31049 * 17.02372 * 23 22 2 25 25 O 1.21281 * 124.94447 * 179.62072 * 24 23 22 26 26 C 1.51282 * 110.11741 * 359.58441 * 24 23 22 27 27 H 1.09001 * 109.46643 * 66.70595 * 1 2 3 28 28 H 1.08999 * 109.47027 * 306.70549 * 1 2 3 29 29 H 1.08999 * 109.46995 * 186.70529 * 1 2 3 30 30 H 1.08996 * 110.31727 * 300.88947 * 6 5 3 31 31 H 1.09002 * 110.31357 * 63.07539 * 6 5 3 32 32 H 1.09006 * 112.36997 * 64.27127 * 9 7 6 33 33 H 1.09003 * 112.36946 * 191.61916 * 9 7 6 34 34 H 1.09001 * 110.31456 * 47.67712 * 12 10 5 35 35 H 1.08999 * 110.31426 * 169.85628 * 12 10 5 36 36 H 0.97003 * 120.00681 * 180.02562 * 17 16 14 37 37 H 1.09002 * 110.24693 * 211.70651 * 22 2 1 38 38 H 1.09004 * 110.24429 * 333.70243 * 22 2 1 39 39 H 0.97002 * 124.34213 * 197.02045 * 23 22 2 40 40 H 1.08993 * 110.48607 * 225.07314 * 26 24 23 41 41 H 1.09001 * 110.60256 * 102.47763 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0666 1.4082 0.0000 4 8 2.6863 1.8211 0.9572 5 7 1.8578 2.2089 -1.0639 6 6 1.0433 1.9036 -2.2597 7 6 1.1930 3.1523 -3.1831 8 1 0.9767 2.9987 -4.2404 9 6 2.6632 3.5708 -2.8218 10 6 2.3968 3.5857 -1.2702 11 1 3.2338 3.8743 -0.6344 12 6 1.1323 4.4987 -1.2297 13 7 0.3957 4.2107 -2.4954 14 6 -0.7597 4.7928 -2.9442 15 1 -1.1837 4.4917 -3.8907 16 6 -1.3858 5.7699 -2.1825 17 7 -0.8688 6.1371 -1.0292 18 14 -2.9615 6.5646 -2.7949 19 1 -4.1295 5.7877 -2.3075 20 1 -3.0449 7.9565 -2.2843 21 1 -2.9629 6.5811 -4.2798 22 6 2.0829 -0.8022 1.1989 23 7 2.2853 -2.1670 0.6957 24 6 2.2955 -2.1956 -0.6482 25 8 2.4514 -3.1929 -1.3206 26 6 2.0834 -0.8031 -1.2000 27 1 -0.3633 0.4064 -0.9439 28 1 -0.3633 0.6142 0.8239 29 1 -0.3633 -1.0206 0.1200 30 1 1.4253 1.0142 -2.7609 31 1 -0.0009 1.7625 -1.9804 32 1 3.3931 2.8153 -3.1130 33 1 2.9208 4.5568 -3.2085 34 1 0.5110 4.2468 -0.3702 35 1 1.4243 5.5482 -1.1919 36 1 -1.3065 6.8196 -0.4967 37 1 3.0303 -0.3782 1.5317 38 1 1.3617 -0.8040 2.0163 39 1 2.3972 -2.9475 1.2606 40 1 1.3584 -0.8215 -2.0136 41 1 3.0274 -0.3777 -1.5408 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032536392.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:23 Heat of formation + Delta-G solvation = -6.948909 kcal Electronic energy + Delta-G solvation = -24903.123374 eV Core-core repulsion = 21398.814264 eV Total energy + Delta-G solvation = -3504.309110 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -41.13355 -39.73223 -38.06021 -36.33829 -33.85084 -32.89000 -31.27156 -29.04652 -28.63638 -28.52937 -26.49018 -25.30146 -24.13077 -22.34062 -20.87191 -20.08023 -19.73165 -18.51866 -17.71986 -16.90193 -16.38341 -16.02373 -15.75598 -15.06743 -14.72760 -14.47702 -14.26477 -13.98138 -13.82031 -13.43572 -13.33915 -12.75950 -12.52887 -12.43789 -12.13409 -11.88267 -11.67231 -11.41554 -11.38404 -11.21047 -11.05822 -10.91707 -10.76888 -10.63991 -10.30174 -10.13145 -10.11659 -9.67651 -9.49327 -9.24661 -8.77729 -8.11236 -6.98856 -5.82816 -3.16802 2.44489 2.80963 3.06644 3.31032 3.33706 3.38941 3.41328 4.06273 4.21031 4.36648 4.55506 4.69161 4.84967 5.04391 5.11578 5.27934 5.33700 5.38893 5.45087 5.49747 5.55438 5.61281 5.67127 5.69027 5.75265 5.85628 5.99024 6.19178 6.21187 6.33395 6.40688 6.52234 6.58521 6.61465 6.80929 7.33584 7.38776 7.64097 7.95311 8.01671 8.07841 8.39644 9.02251 9.65067 10.34713 11.30289 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024144 B = 0.004457 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.443582 B = 6281.381421 C = 6374.390983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C 0.545 3.455 4 O -0.550 6.550 5 N -0.599 5.599 6 C 0.077 3.923 7 C 0.139 3.861 8 H 0.105 0.895 9 C -0.152 4.152 10 C 0.099 3.901 11 H 0.115 0.885 12 C 0.173 3.827 13 N -0.597 5.597 14 C -0.231 4.231 15 H 0.081 0.919 16 C -0.004 4.004 17 N -0.919 5.919 18 Si 0.911 3.089 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.120 3.880 23 N -0.730 5.730 24 C 0.524 3.476 25 O -0.538 6.538 26 C -0.144 4.144 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.254 0.746 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.411 0.589 40 H 0.112 0.888 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.549 -11.521 1.070 12.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.093 4.093 3 C 0.332 3.668 4 O -0.428 6.428 5 N -0.331 5.331 6 C -0.049 4.049 7 C 0.030 3.970 8 H 0.123 0.877 9 C -0.192 4.192 10 C -0.003 4.003 11 H 0.132 0.868 12 C 0.048 3.952 13 N -0.321 5.321 14 C -0.359 4.359 15 H 0.099 0.901 16 C -0.201 4.201 17 N -0.565 5.565 18 Si 0.742 3.258 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.206 1.206 22 C -0.004 4.004 23 N -0.386 5.386 24 C 0.311 3.689 25 O -0.415 6.415 26 C -0.185 4.185 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.249 0.751 40 H 0.131 0.869 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.737 -11.548 1.301 12.960 hybrid contribution -0.935 0.214 0.149 0.970 sum 4.802 -11.333 1.450 12.394 Atomic orbital electron populations 1.21910 0.90705 1.02778 1.04457 1.21593 0.98388 0.93246 0.96051 1.19449 0.79879 0.85712 0.81791 1.90677 1.43019 1.75635 1.33517 1.49125 1.48825 1.16552 1.18627 1.23571 0.95287 0.99414 0.86581 1.23169 0.90320 0.88153 0.95387 0.87693 1.24230 0.97862 1.01764 0.95348 1.24425 0.98416 0.81738 0.95706 0.86752 1.22127 0.88108 0.95758 0.89210 1.45530 1.25122 1.42175 1.19278 1.19027 0.97966 1.15764 1.03127 0.90080 1.24798 0.99192 0.99291 0.96834 1.69891 1.40192 1.33570 1.12893 0.86136 0.83040 0.78671 0.77971 1.21609 1.21681 1.20622 1.22051 1.02664 0.80253 0.95448 1.46262 1.74129 1.10525 1.07670 1.20792 0.74824 0.90683 0.82644 1.90753 1.50465 1.37374 1.62873 1.22510 1.04485 0.92960 0.98510 0.90360 0.91118 0.91557 0.92480 0.90485 0.91517 0.89744 0.93243 0.92620 0.93555 0.89143 0.89475 0.75079 0.86949 0.87382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.27 37.16 0.31 -1.32 16 2 C -0.09 -1.08 0.62 -154.02 -0.09 -1.17 16 3 C 0.54 8.64 6.55 -10.99 -0.07 8.57 16 4 O -0.55 -10.32 16.00 5.56 0.09 -10.23 16 5 N -0.60 -9.76 2.93 -156.56 -0.46 -10.22 16 6 C 0.08 1.16 4.92 -1.67 -0.01 1.15 16 7 C 0.14 2.37 5.47 -62.55 -0.34 2.03 16 8 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 9 C -0.15 -2.36 6.84 -22.11 -0.15 -2.51 16 10 C 0.10 1.76 5.25 -62.35 -0.33 1.44 16 11 H 0.11 1.97 8.08 -51.92 -0.42 1.55 16 12 C 0.17 3.89 4.83 -0.90 0.00 3.88 16 13 N -0.60 -13.50 3.07 -155.23 -0.48 -13.98 16 14 C -0.23 -5.88 10.38 -15.06 -0.16 -6.03 16 15 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 16 C 0.00 -0.11 5.49 -17.44 -0.10 -0.21 16 17 N -0.92 -25.90 10.69 55.49 0.59 -25.30 16 18 Si 0.91 21.06 29.55 -169.99 -5.02 16.03 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 C 0.12 1.27 6.63 -3.07 -0.02 1.25 16 23 N -0.73 -7.35 6.24 -59.13 -0.37 -7.72 16 24 C 0.52 6.63 8.43 -10.86 -0.09 6.54 16 25 O -0.54 -8.73 18.03 5.56 0.10 -8.63 16 26 C -0.14 -1.64 4.52 -26.74 -0.12 -1.76 16 27 H 0.08 0.95 5.38 -51.93 -0.28 0.67 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 30 H 0.06 0.69 6.11 -51.93 -0.32 0.37 16 31 H 0.08 1.28 6.21 -51.93 -0.32 0.95 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.05 1.29 7.72 -51.93 -0.40 0.89 16 35 H 0.06 1.40 7.53 -51.93 -0.39 1.01 16 36 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.09 1.05 7.12 -51.93 -0.37 0.68 16 38 H 0.09 0.79 7.91 -51.93 -0.41 0.38 16 39 H 0.41 3.30 8.96 -40.82 -0.37 2.94 16 40 H 0.11 1.17 6.87 -51.93 -0.36 0.82 16 41 H 0.11 1.22 7.89 -51.93 -0.41 0.81 16 LS Contribution 322.65 15.07 4.86 4.86 Total: -1.00 -31.82 322.65 -7.56 -39.38 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.70 Total: 3.95 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: -1.18 Total: 11.84 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.71 Total: -57.22 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.19 Total: -18.86 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.82 -7.56 -39.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032536392.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.434 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds