Wall clock time and date at job start Tue Mar 31 2020 03:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 110.85615 * 2 1 4 4 O 1.21273 * 120.00199 * 114.29584 * 3 2 1 5 5 N 1.34776 * 119.99815 * 294.29135 * 3 2 1 6 6 C 1.47874 * 126.94454 * 4.98713 * 5 3 2 7 7 C 1.56020 * 105.10048 * 181.97708 * 6 5 3 8 8 H 1.09005 * 116.24594 * 158.84153 * 7 6 5 9 9 C 1.57076 * 99.60870 * 32.80817 * 7 6 5 10 10 C 1.49288 * 126.94502 * 184.67242 * 5 3 2 11 11 H 1.09007 * 116.15197 * 16.72250 * 10 5 3 12 12 C 1.56018 * 104.09294 * 246.72082 * 10 5 3 13 13 N 1.49246 * 105.36886 * 288.93607 * 12 10 5 14 14 C 1.36940 * 127.75354 * 182.18629 * 13 12 10 15 15 H 1.07996 * 119.99725 * 179.51439 * 14 13 12 16 16 C 1.38808 * 119.99642 * 359.50886 * 14 13 12 17 17 N 1.31611 * 120.00468 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99802 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46848 * 90.00150 * 18 16 14 20 20 H 1.48497 * 109.47434 * 210.00190 * 18 16 14 21 21 H 1.48500 * 109.47366 * 330.00643 * 18 16 14 22 22 C 1.54482 * 110.96942 * 123.78809 * 2 1 3 23 23 N 1.46859 * 105.42523 * 92.71282 * 22 2 1 24 24 C 1.34421 * 111.31049 * 17.02372 * 23 22 2 25 25 O 1.21281 * 124.94447 * 179.62072 * 24 23 22 26 26 C 1.51282 * 110.11741 * 359.58441 * 24 23 22 27 27 H 1.09001 * 109.46643 * 66.70595 * 1 2 3 28 28 H 1.08999 * 109.47027 * 306.70549 * 1 2 3 29 29 H 1.08999 * 109.46995 * 186.70529 * 1 2 3 30 30 H 1.08996 * 110.31727 * 300.88947 * 6 5 3 31 31 H 1.09002 * 110.31357 * 63.07539 * 6 5 3 32 32 H 1.09006 * 112.36997 * 64.27127 * 9 7 6 33 33 H 1.09003 * 112.36946 * 191.61916 * 9 7 6 34 34 H 1.09001 * 110.31456 * 47.67712 * 12 10 5 35 35 H 1.08999 * 110.31426 * 169.85628 * 12 10 5 36 36 H 0.97003 * 120.00681 * 180.02562 * 17 16 14 37 37 H 1.09002 * 110.24693 * 211.70651 * 22 2 1 38 38 H 1.09004 * 110.24429 * 333.70243 * 22 2 1 39 39 H 0.97002 * 124.34213 * 197.02045 * 23 22 2 40 40 H 1.08993 * 110.48607 * 225.07314 * 26 24 23 41 41 H 1.09001 * 110.60256 * 102.47763 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0666 1.4082 0.0000 4 8 2.6863 1.8211 0.9572 5 7 1.8578 2.2089 -1.0639 6 6 1.0433 1.9036 -2.2597 7 6 1.1930 3.1523 -3.1831 8 1 0.9767 2.9987 -4.2404 9 6 2.6632 3.5708 -2.8218 10 6 2.3968 3.5857 -1.2702 11 1 3.2338 3.8743 -0.6344 12 6 1.1323 4.4987 -1.2297 13 7 0.3957 4.2107 -2.4954 14 6 -0.7597 4.7928 -2.9442 15 1 -1.1837 4.4917 -3.8907 16 6 -1.3858 5.7699 -2.1825 17 7 -0.8688 6.1371 -1.0292 18 14 -2.9615 6.5646 -2.7949 19 1 -4.1295 5.7877 -2.3075 20 1 -3.0449 7.9565 -2.2843 21 1 -2.9629 6.5811 -4.2798 22 6 2.0829 -0.8022 1.1989 23 7 2.2853 -2.1670 0.6957 24 6 2.2955 -2.1956 -0.6482 25 8 2.4514 -3.1929 -1.3206 26 6 2.0834 -0.8031 -1.2000 27 1 -0.3633 0.4064 -0.9439 28 1 -0.3633 0.6142 0.8239 29 1 -0.3633 -1.0206 0.1200 30 1 1.4253 1.0142 -2.7609 31 1 -0.0009 1.7625 -1.9804 32 1 3.3931 2.8153 -3.1130 33 1 2.9208 4.5568 -3.2085 34 1 0.5110 4.2468 -0.3702 35 1 1.4243 5.5482 -1.1919 36 1 -1.3065 6.8196 -0.4967 37 1 3.0303 -0.3782 1.5317 38 1 1.3617 -0.8040 2.0163 39 1 2.3972 -2.9475 1.2606 40 1 1.3584 -0.8215 -2.0136 41 1 3.0274 -0.3777 -1.5408 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032536392.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:21 Heat of formation + Delta-G solvation = -30.172310 kcal Electronic energy + Delta-G solvation = -24904.130416 eV Core-core repulsion = 21398.814264 eV Total energy + Delta-G solvation = -3505.316152 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.25077 -40.99203 -39.37423 -37.45292 -35.46610 -34.15183 -32.78296 -30.56630 -30.17453 -29.51052 -27.45695 -26.89725 -25.62589 -23.73041 -21.87294 -21.36023 -21.19768 -19.89494 -18.92750 -18.33193 -17.60007 -17.36439 -17.08707 -16.35567 -16.00073 -15.87892 -15.55188 -15.32092 -14.98804 -14.80873 -14.38741 -13.91588 -13.84998 -13.65704 -13.45557 -13.27438 -13.14908 -12.93688 -12.78397 -12.66651 -12.38966 -12.27514 -12.17857 -12.07388 -11.97580 -11.73515 -11.48464 -11.21637 -10.82687 -10.62223 -10.17042 -9.50480 -8.86611 -7.82389 -5.16295 1.47033 1.49463 1.49865 1.56059 1.58493 1.89341 2.36968 2.50794 3.07563 3.21758 3.36868 3.40676 3.58628 3.71248 3.78339 3.93402 3.96203 4.07484 4.24960 4.46300 4.50327 4.52773 4.66918 4.67843 4.73063 4.76671 4.83175 4.94409 4.98894 5.06989 5.15930 5.18430 5.33486 5.48446 5.55681 5.68229 5.71410 5.94984 6.11543 6.66813 7.04306 7.10239 7.18390 7.73446 8.45796 9.29858 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024144 B = 0.004457 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.443582 B = 6281.381421 C = 6374.390983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.081 4.081 3 C 0.542 3.458 4 O -0.582 6.582 5 N -0.601 5.601 6 C 0.085 3.915 7 C 0.130 3.870 8 H 0.131 0.869 9 C -0.131 4.131 10 C 0.103 3.897 11 H 0.117 0.883 12 C 0.185 3.815 13 N -0.616 5.616 14 C -0.225 4.225 15 H 0.095 0.905 16 C -0.069 4.069 17 N -0.957 5.957 18 Si 0.972 3.028 19 H -0.291 1.291 20 H -0.304 1.304 21 H -0.264 1.264 22 C 0.125 3.875 23 N -0.714 5.714 24 C 0.524 3.476 25 O -0.575 6.575 26 C -0.138 4.138 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.001 0.999 35 H 0.015 0.985 36 H 0.243 0.757 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.422 0.578 40 H 0.127 0.873 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.952 -13.745 -0.552 14.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.085 4.085 3 C 0.330 3.670 4 O -0.463 6.463 5 N -0.333 5.333 6 C -0.039 4.039 7 C 0.024 3.976 8 H 0.149 0.851 9 C -0.170 4.170 10 C 0.000 4.000 11 H 0.135 0.865 12 C 0.060 3.940 13 N -0.341 5.341 14 C -0.354 4.354 15 H 0.113 0.887 16 C -0.261 4.261 17 N -0.606 5.606 18 Si 0.801 3.199 19 H -0.218 1.218 20 H -0.231 1.231 21 H -0.189 1.189 22 C 0.000 4.000 23 N -0.370 5.370 24 C 0.311 3.689 25 O -0.456 6.456 26 C -0.178 4.178 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.124 0.876 33 H 0.096 0.904 34 H 0.019 0.981 35 H 0.034 0.966 36 H 0.052 0.948 37 H 0.101 0.899 38 H 0.123 0.877 39 H 0.263 0.737 40 H 0.145 0.855 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.150 -13.821 -0.344 15.132 hybrid contribution -1.025 0.894 0.681 1.521 sum 5.125 -12.928 0.337 13.910 Atomic orbital electron populations 1.21887 0.90107 1.03783 1.03675 1.21503 0.98580 0.90893 0.97524 1.20083 0.79100 0.86948 0.80821 1.90664 1.44452 1.76654 1.34564 1.49172 1.48943 1.15800 1.19379 1.23462 0.94749 0.99914 0.85740 1.23591 0.90187 0.87158 0.96692 0.85132 1.24133 0.97615 1.02684 0.92561 1.24218 0.96060 0.81683 0.98018 0.86492 1.21745 0.89543 0.94743 0.88013 1.45759 1.25089 1.43454 1.19827 1.19499 0.98385 1.14522 1.02960 0.88708 1.25567 1.02359 1.00853 0.97339 1.70124 1.41609 1.34462 1.14410 0.85165 0.79671 0.76842 0.78183 1.21791 1.23075 1.18857 1.22023 1.02732 0.79956 0.95268 1.46175 1.72821 1.10798 1.07158 1.20916 0.74308 0.90534 0.83097 1.90745 1.52484 1.38584 1.63739 1.22513 1.05176 0.91827 0.98329 0.90808 0.92497 0.89398 0.88030 0.91905 0.87643 0.90351 0.98084 0.96635 0.94801 0.89903 0.87690 0.73748 0.85464 0.86691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.27 71.98 0.59 -2.28 16 2 C -0.08 -1.77 0.62 -51.87 -0.03 -1.80 16 3 C 0.54 16.42 6.55 87.66 0.57 16.99 16 4 O -0.58 -21.60 16.00 -3.01 -0.05 -21.65 16 5 N -0.60 -18.62 2.93 -767.64 -2.25 -20.87 16 6 C 0.09 2.32 4.92 87.16 0.43 2.75 16 7 C 0.13 4.09 5.47 46.93 0.26 4.35 16 8 H 0.13 3.47 8.14 -2.38 -0.02 3.45 16 9 C -0.13 -3.69 6.84 33.59 0.23 -3.46 16 10 C 0.10 3.61 5.25 47.06 0.25 3.86 16 11 H 0.12 4.02 8.08 -2.38 -0.02 4.00 16 12 C 0.19 8.67 4.83 86.89 0.42 9.09 16 13 N -0.62 -27.83 3.07 -645.01 -1.98 -29.81 16 14 C -0.22 -11.41 10.38 84.03 0.87 -10.54 16 15 H 0.10 4.45 7.83 -2.91 -0.02 4.42 16 16 C -0.07 -3.72 5.49 84.86 0.47 -3.25 16 17 N -0.96 -56.62 10.69 21.65 0.23 -56.39 16 18 Si 0.97 44.03 29.55 68.60 2.03 46.05 16 19 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 21 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 22 C 0.12 2.33 6.63 86.81 0.58 2.90 16 23 N -0.71 -12.41 6.24 -459.58 -2.87 -15.28 16 24 C 0.52 11.78 8.43 87.90 0.74 12.52 16 25 O -0.58 -17.39 18.03 -3.03 -0.05 -17.45 16 26 C -0.14 -2.66 4.52 30.59 0.14 -2.52 16 27 H 0.07 1.63 5.38 -2.39 -0.01 1.61 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.09 1.47 8.13 -2.39 -0.02 1.45 16 30 H 0.10 1.94 6.11 -2.39 -0.01 1.92 16 31 H 0.06 1.95 6.21 -2.39 -0.01 1.93 16 32 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.00 0.05 7.72 -2.39 -0.02 0.03 16 35 H 0.02 0.83 7.53 -2.39 -0.02 0.81 16 36 H 0.24 14.26 8.31 -92.71 -0.77 13.48 16 37 H 0.08 1.76 7.12 -2.39 -0.02 1.74 16 38 H 0.10 1.64 7.91 -2.38 -0.02 1.62 16 39 H 0.42 5.64 8.96 -92.71 -0.83 4.81 16 40 H 0.13 2.09 6.87 -2.39 -0.02 2.08 16 41 H 0.11 2.13 7.89 -2.39 -0.02 2.11 16 Total: -1.00 -72.47 322.65 0.80 -71.67 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.23 Total: 15.10 kcal Atomic # 6 Polarization: 23.11 SS G_CDS: 5.51 Total: 28.63 kcal Atomic # 7 Polarization: -115.48 SS G_CDS: -6.87 Total: -122.35 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.10 Total: -39.09 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -72.47 0.80 -71.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032536392.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.502 kcal (2) G-P(sol) polarization free energy of solvation -72.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds