Wall clock time and date at job start Tue Mar 31 2020 03:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34258 * 126.52348 * 2 1 4 4 C 1.34047 * 108.22616 * 180.02562 * 3 2 1 5 5 N 1.29934 * 109.24273 * 359.71238 * 4 3 2 6 6 C 1.36061 * 108.47656 * 0.44876 * 5 4 3 7 7 C 1.47420 * 126.44840 * 179.82151 * 6 5 4 8 8 O 1.21614 * 120.00146 * 173.66761 * 7 6 5 9 9 N 1.34776 * 120.00179 * 353.66374 * 7 6 5 10 10 C 1.46930 * 120.62943 * 354.40777 * 9 7 6 11 11 C 1.53190 * 108.77182 * 126.41058 * 10 9 7 12 12 C 1.53033 * 109.31483 * 54.63800 * 11 10 9 13 13 H 1.09003 * 109.46321 * 178.62622 * 12 11 10 14 14 N 1.46498 * 109.46352 * 58.65256 * 12 11 10 15 15 C 1.36940 * 120.00315 * 84.99669 * 14 12 11 16 16 H 1.07999 * 119.99914 * 0.02562 * 15 14 12 17 17 C 1.38814 * 119.99977 * 180.02562 * 15 14 12 18 18 N 1.31613 * 119.99900 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99490 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46739 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47326 * 299.99877 * 19 17 15 22 22 H 1.48500 * 109.46908 * 60.00719 * 19 17 15 23 23 C 1.53038 * 109.53617 * 298.62946 * 12 11 10 24 24 H 1.08991 * 109.50020 * 301.41270 * 23 12 11 25 25 C 1.53006 * 109.49798 * 181.31789 * 23 12 11 26 26 C 1.46926 * 120.63209 * 174.43005 * 9 7 6 27 27 H 1.09001 * 109.47438 * 269.98224 * 1 2 3 28 28 H 1.09001 * 109.46969 * 29.98510 * 1 2 3 29 29 H 1.09000 * 109.47131 * 149.97998 * 1 2 3 30 30 H 1.08005 * 125.38007 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.58565 * 6.62130 * 10 9 7 32 32 H 1.09000 * 109.58386 * 246.20116 * 10 9 7 33 33 H 1.09001 * 109.50058 * 294.68000 * 11 10 9 34 34 H 1.09005 * 109.49427 * 174.58610 * 11 10 9 35 35 H 0.97003 * 119.99902 * 265.00627 * 14 12 11 36 36 H 0.97003 * 119.99537 * 179.97438 * 18 17 15 37 37 H 1.08998 * 109.47366 * 59.99827 * 25 23 12 38 38 H 1.09001 * 109.47150 * 180.02562 * 25 23 12 39 39 H 1.09006 * 109.46830 * 299.99872 * 25 23 12 40 40 H 1.09002 * 109.58324 * 353.37065 * 26 9 7 41 41 H 1.08997 * 109.59030 * 113.80132 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5787 0.6581 -0.0006 5 7 3.6002 -0.6411 0.0052 6 6 2.3170 -1.0935 -0.0004 7 6 1.8854 -2.5031 -0.0004 8 8 0.7059 -2.7780 0.1104 9 7 2.7979 -3.4874 -0.1234 10 6 4.2096 -3.1715 -0.3804 11 6 5.0708 -3.8640 0.6805 12 6 4.7537 -5.3610 0.6916 13 1 5.3827 -5.8601 1.4288 14 7 5.0151 -5.9252 -0.6349 15 6 6.2799 -6.3291 -0.9701 16 1 7.0847 -6.2322 -0.2564 17 6 6.5277 -6.8632 -2.2272 18 7 5.5470 -6.9809 -3.0971 19 14 8.2529 -7.4148 -2.6841 20 1 8.2520 -7.9449 -4.0713 21 1 9.1817 -6.2596 -2.5958 22 1 8.6963 -8.4793 -1.7484 23 6 3.2814 -5.5696 1.0533 24 1 3.0805 -5.1284 2.0294 25 6 2.9734 -7.0678 1.0963 26 6 2.3998 -4.8966 -0.0035 27 1 -0.3634 -0.0003 1.0277 28 1 -0.3633 0.8901 -0.5136 29 1 -0.3633 -0.8898 -0.5141 30 1 4.4489 1.2978 -0.0003 31 1 4.3587 -2.0931 -0.3253 32 1 4.4901 -3.5310 -1.3705 33 1 4.8531 -3.4387 1.6602 34 1 6.1251 -3.7171 0.4458 35 1 4.2923 -6.0125 -1.2759 36 1 5.7203 -7.3538 -3.9757 37 1 3.6029 -7.5468 1.8461 38 1 1.9246 -7.2158 1.3535 39 1 3.1732 -7.5079 0.1192 40 1 1.3548 -4.9564 0.3006 41 1 2.5327 -5.3968 -0.9627 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035945470.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:52 Heat of formation + Delta-G solvation = 11.694736 kcal Electronic energy + Delta-G solvation = -24479.577726 eV Core-core repulsion = 20976.077065 eV Total energy + Delta-G solvation = -3503.500661 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.57387 -39.79009 -37.62241 -35.17318 -34.03832 -32.66247 -32.50442 -31.27022 -29.07658 -27.85705 -26.18114 -25.03384 -23.58542 -23.06876 -22.14400 -21.44847 -19.91245 -18.40558 -17.27961 -17.24468 -16.97437 -16.36367 -15.63490 -14.96701 -14.80053 -14.40780 -14.30220 -13.90760 -13.71097 -13.30002 -13.27452 -13.16817 -12.96367 -12.57758 -12.45665 -12.13017 -11.60499 -11.48138 -11.31835 -11.14461 -10.89242 -10.76631 -10.66908 -10.40696 -10.17777 -10.02406 -9.76084 -9.50401 -9.34709 -9.04281 -8.79901 -8.09138 -6.90108 -5.73372 -3.00971 1.03661 1.97411 2.43959 3.27153 3.42551 3.45404 3.50335 3.50893 3.96374 4.52959 4.62318 4.71475 5.02906 5.24651 5.31082 5.33394 5.41491 5.49536 5.65422 5.69691 5.74049 5.76466 5.87555 5.94433 6.03773 6.11036 6.18806 6.25512 6.35506 6.52351 6.58683 6.67022 6.79131 6.87577 6.93136 7.05189 7.16977 7.37179 7.73320 7.82361 8.37674 8.45477 9.56706 10.14813 10.50045 11.49296 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020318 B = 0.004500 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.768929 B = 6220.232526 C = 6924.507272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.035 3.965 3 O -0.202 6.202 4 C 0.171 3.829 5 N -0.452 5.452 6 C -0.064 4.064 7 C 0.594 3.406 8 O -0.552 6.552 9 N -0.579 5.579 10 C 0.071 3.929 11 C -0.142 4.142 12 C 0.176 3.824 13 H 0.048 0.952 14 N -0.718 5.718 15 C -0.235 4.235 16 H 0.068 0.932 17 C -0.013 4.013 18 N -0.934 5.934 19 Si 0.904 3.096 20 H -0.293 1.293 21 H -0.287 1.287 22 H -0.287 1.287 23 C -0.107 4.107 24 H 0.064 0.936 25 C -0.137 4.137 26 C 0.118 3.882 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.254 0.746 31 H 0.138 0.862 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.053 0.947 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.685 14.951 7.908 18.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.021 4.021 3 O -0.088 6.088 4 C -0.056 4.056 5 N -0.180 5.180 6 C -0.184 4.184 7 C 0.381 3.619 8 O -0.432 6.432 9 N -0.308 5.308 10 C -0.051 4.051 11 C -0.183 4.183 12 C 0.066 3.934 13 H 0.066 0.934 14 N -0.360 5.360 15 C -0.366 4.366 16 H 0.086 0.914 17 C -0.208 4.208 18 N -0.583 5.583 19 Si 0.736 3.264 20 H -0.218 1.218 21 H -0.214 1.214 22 H -0.214 1.214 23 C -0.127 4.127 24 H 0.082 0.918 25 C -0.194 4.194 26 C -0.004 4.004 27 H 0.109 0.891 28 H 0.097 0.903 29 H 0.129 0.871 30 H 0.270 0.730 31 H 0.154 0.846 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.218 0.782 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.566 14.371 7.939 18.078 hybrid contribution 0.706 0.078 -0.568 0.910 sum -6.860 14.449 7.370 17.611 Atomic orbital electron populations 1.20543 0.82648 1.05159 1.04567 1.23695 0.95157 0.83265 0.99962 1.84357 1.18562 1.36287 1.69611 1.28242 0.85227 0.91689 1.00485 1.70488 1.21229 1.09166 1.17163 1.21578 0.88508 0.95771 1.12501 1.16775 0.85227 0.82595 0.77297 1.90733 1.16452 1.83056 1.52984 1.47939 1.09539 1.05770 1.67522 1.22868 0.77546 1.04961 0.99716 1.22415 0.99937 0.98771 0.97154 1.20259 0.92076 0.91551 0.89530 0.93389 1.42450 1.08869 1.73666 1.11049 1.19186 0.86872 1.33159 0.97374 0.91359 1.24686 0.97210 1.02239 0.96707 1.69642 1.30458 1.51431 1.06724 0.86314 0.84481 0.78419 0.77233 1.21850 1.21408 1.21422 1.21695 0.96986 0.96190 0.97869 0.91752 1.21666 0.99621 0.94805 1.03351 1.21708 0.99025 0.79556 1.00091 0.89100 0.90330 0.87101 0.72998 0.84580 0.90815 0.93746 0.91112 0.78165 0.93564 0.92824 0.93814 0.91032 0.89864 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 9.82 36.01 0.35 -0.34 16 2 C 0.04 0.43 7.44 -35.08 -0.26 0.17 16 3 O -0.20 -2.13 10.73 6.52 0.07 -2.06 16 4 C 0.17 1.65 13.19 51.96 0.69 2.33 16 5 N -0.45 -6.19 7.73 -11.48 -0.09 -6.27 16 6 C -0.06 -0.96 6.72 -83.03 -0.56 -1.52 16 7 C 0.59 10.40 7.68 -12.52 -0.10 10.30 16 8 O -0.55 -10.20 14.32 5.27 0.08 -10.12 16 9 N -0.58 -10.44 2.97 -174.03 -0.52 -10.96 16 10 C 0.07 1.30 6.07 -3.71 -0.02 1.28 16 11 C -0.14 -2.60 5.78 -26.62 -0.15 -2.76 16 12 C 0.18 3.49 2.53 -67.89 -0.17 3.32 16 13 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 14 N -0.72 -17.23 3.64 -53.39 -0.19 -17.42 16 15 C -0.23 -6.31 9.93 -15.06 -0.15 -6.46 16 16 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 17 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -27.75 13.06 55.49 0.72 -27.02 16 19 Si 0.90 22.21 29.55 -169.99 -5.02 17.18 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 C -0.11 -1.87 2.67 -90.50 -0.24 -2.11 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 25 C -0.14 -2.28 9.05 37.16 0.34 -1.95 16 26 C 0.12 2.13 5.40 -3.71 -0.02 2.11 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.11 1.23 6.62 -51.93 -0.34 0.88 16 30 H 0.25 1.06 8.06 -52.48 -0.42 0.64 16 31 H 0.14 2.33 3.65 -77.50 -0.28 2.05 16 32 H 0.07 1.59 7.74 -51.93 -0.40 1.18 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.38 9.85 5.93 -40.82 -0.24 9.61 16 36 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 1.38 7.54 -51.93 -0.39 0.99 16 40 H 0.08 1.45 7.04 -51.93 -0.37 1.09 16 41 H 0.08 1.52 6.64 -51.93 -0.34 1.18 16 LS Contribution 329.54 15.07 4.97 4.97 Total: -1.00 -32.06 329.54 -6.10 -38.16 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.72 Total: 9.62 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -0.39 Total: 3.93 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -0.08 Total: -61.68 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.15 Total: -12.18 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.06 -6.10 -38.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035945470.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.857 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds