Wall clock time and date at job start Tue Mar 31 2020 03:53:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53008 * 109.47250 * 2 1
4 4 C 1.50699 * 109.47148 * 180.02562 * 3 2 1
5 5 C 1.35311 * 126.66655 * 90.00308 * 4 3 2
6 6 C 1.42271 * 103.92169 * 180.02562 * 5 4 3
7 7 C 1.48332 * 126.93847 * 179.97438 * 6 5 4
8 8 O 1.21500 * 119.99962 * 0.02562 * 7 6 5
9 9 N 1.34779 * 120.00000 * 179.97438 * 7 6 5
10 10 C 1.46502 * 119.99973 * 180.02562 * 9 7 6
11 11 C 1.53001 * 109.47218 * 180.02562 * 10 9 7
12 12 H 1.08997 * 112.77634 * 56.27900 * 11 10 9
13 13 C 1.53494 * 113.46603 * 187.06031 * 11 10 9
14 14 C 1.53492 * 83.34095 * 140.84733 * 13 11 10
15 15 N 1.47063 * 87.98961 * 333.93094 * 14 13 11
16 16 C 1.36936 * 136.05985 * 207.38373 * 15 14 13
17 17 H 1.08001 * 119.99969 * 173.16974 * 16 15 14
18 18 C 1.38814 * 119.99955 * 353.17158 * 16 15 14
19 19 N 1.31621 * 119.99678 * 5.03689 * 18 16 15
20 20 Si 1.86800 * 119.99880 * 185.04019 * 18 16 15
21 21 H 1.48508 * 109.46943 * 94.98498 * 20 18 16
22 22 H 1.48498 * 109.46995 * 214.98519 * 20 18 16
23 23 H 1.48493 * 109.47191 * 334.98782 * 20 18 16
24 24 N 1.30983 * 106.12298 * 0.25811 * 6 5 4
25 25 O 1.20903 * 111.43896 * 359.53896 * 24 6 5
26 26 H 1.09000 * 109.46712 * 300.00033 * 1 2 3
27 27 H 1.09002 * 109.46950 * 59.99722 * 1 2 3
28 28 H 1.08991 * 109.46965 * 179.97438 * 1 2 3
29 29 H 1.08997 * 109.47406 * 240.00194 * 2 1 3
30 30 H 1.08993 * 109.47233 * 119.99756 * 2 1 3
31 31 H 1.08997 * 109.46757 * 59.99797 * 3 2 1
32 32 H 1.09002 * 109.46879 * 299.99824 * 3 2 1
33 33 H 1.07999 * 128.03677 * 359.97438 * 5 4 3
34 34 H 0.96995 * 119.99692 * 0.02562 * 9 7 6
35 35 H 1.09005 * 109.46958 * 59.99833 * 10 9 7
36 36 H 1.09007 * 109.46840 * 300.00484 * 10 9 7
37 37 H 1.08999 * 114.20581 * 254.43160 * 13 11 10
38 38 H 1.08991 * 114.20856 * 27.06350 * 13 11 10
39 39 H 1.09002 * 113.46997 * 219.14989 * 14 13 11
40 40 H 1.09001 * 113.46852 * 88.71157 * 14 13 11
41 41 H 0.97002 * 119.99494 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4426 0.0000
4 6 3.5471 1.4425 -0.0006
5 6 4.3546 1.4427 -1.0863
6 6 5.6669 1.4420 -0.5368
7 6 6.9471 1.4413 -1.2861
8 8 6.9398 1.4419 -2.5011
9 7 8.1183 1.4412 -0.6192
10 6 9.3826 1.4411 -1.3592
11 6 10.5515 1.4403 -0.3719
12 1 10.5136 0.6041 0.3262
13 6 11.9201 1.6132 -1.0449
14 6 12.2124 2.4899 0.1806
15 7 10.7667 2.7399 0.2819
16 6 9.9712 3.7437 0.7662
17 1 8.9032 3.7100 0.6088
18 6 10.5374 4.8048 1.4594
19 7 11.8460 4.8979 1.5658
20 14 9.4421 6.1003 2.2413
21 1 9.2078 5.7557 3.6667
22 1 10.1049 7.4264 2.1551
23 1 8.1429 6.1487 1.5238
24 7 5.5164 1.4358 0.7643
25 8 4.3478 1.4418 1.0740
26 1 -0.3633 0.5138 0.8900
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3633 -1.0276 -0.0005
29 1 1.8934 -0.5138 -0.8900
30 1 1.8933 -0.5138 0.8899
31 1 1.6767 1.9563 0.8900
32 1 1.6767 1.9564 -0.8900
33 1 4.0693 1.4426 -2.1279
34 1 8.1240 1.4411 0.3508
35 1 9.4367 2.3311 -1.9862
36 1 9.4365 0.5511 -1.9864
37 1 12.5132 0.6999 -1.0927
38 1 11.8884 2.1562 -1.9894
39 1 12.7920 3.3830 -0.0528
40 1 12.6169 1.9333 1.0260
41 1 12.2416 5.6391 2.0505
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001038860470.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:53:34
Heat of formation + Delta-G solvation = 70.231395 kcal
Electronic energy + Delta-G solvation = -23101.336132 eV
Core-core repulsion = 19600.373812 eV
Total energy + Delta-G solvation = -3500.962321 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 293.153 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-45.10610 -39.42003 -38.08589 -36.02405 -34.22139 -33.86192 -32.23829 -31.81011
-28.23703 -27.80578 -27.30793 -24.48823 -23.48422 -22.88835 -22.13588 -21.61799
-19.96761 -19.18155 -17.85335 -17.66793 -16.94415 -16.37351 -15.72148 -15.48487
-15.33681 -14.68406 -14.56114 -14.09871 -13.84537 -13.70657 -13.59482 -13.25944
-12.97120 -12.75767 -12.01334 -11.95027 -11.74446 -11.59443 -11.54963 -11.11701
-11.07471 -11.01104 -10.79546 -10.58498 -10.43484 -10.19525 -9.88957 -9.85227
-9.53506 -9.27455 -8.83361 -8.67126 -6.90507 -5.79782 -3.11526 1.15284
1.63480 2.84254 3.21024 3.37399 3.38590 3.44132 3.45425 4.02918
4.33680 4.43762 4.57895 4.59295 4.85970 4.91793 5.10523 5.16952
5.24154 5.33716 5.36109 5.37776 5.40929 5.53293 5.64037 5.70014
5.75381 5.82391 5.87214 5.88457 6.03606 6.26869 6.37220 6.56819
6.65223 6.78312 7.21929 7.35749 7.56511 7.68655 7.95621 8.04463
8.34351 9.01769 9.68559 10.61327 11.37973
Molecular weight = 293.15amu
Principal moments of inertia in cm(-1)
A = 0.017317 B = 0.003807 C = 0.003262
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1616.484332 B = 7352.261243 C = 8582.781257
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.124 4.124
3 C -0.038 4.038
4 C -0.038 4.038
5 C -0.180 4.180
6 C -0.021 4.021
7 C 0.593 3.407
8 O -0.535 6.535
9 N -0.694 5.694
10 C 0.120 3.880
11 C 0.125 3.875
12 H 0.050 0.950
13 C -0.161 4.161
14 C 0.155 3.845
15 N -0.602 5.602
16 C -0.216 4.216
17 H 0.080 0.920
18 C -0.005 4.005
19 N -0.916 5.916
20 Si 0.906 3.094
21 H -0.288 1.288
22 H -0.290 1.290
23 H -0.281 1.281
24 N -0.326 5.326
25 O 0.123 5.877
26 H 0.057 0.943
27 H 0.057 0.943
28 H 0.058 0.942
29 H 0.069 0.931
30 H 0.069 0.931
31 H 0.091 0.909
32 H 0.098 0.902
33 H 0.179 0.821
34 H 0.411 0.589
35 H 0.075 0.925
36 H 0.064 0.936
37 H 0.059 0.941
38 H 0.080 0.920
39 H 0.069 0.931
40 H 0.027 0.973
41 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.808 -10.379 -3.835 20.966
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.162 4.162
3 C -0.076 4.076
4 C -0.102 4.102
5 C -0.203 4.203
6 C -0.181 4.181
7 C 0.376 3.624
8 O -0.411 6.411
9 N -0.344 5.344
10 C -0.004 4.004
11 C 0.018 3.982
12 H 0.067 0.933
13 C -0.200 4.200
14 C 0.029 3.971
15 N -0.327 5.327
16 C -0.343 4.343
17 H 0.098 0.902
18 C -0.202 4.202
19 N -0.563 5.563
20 Si 0.736 3.264
21 H -0.215 1.215
22 H -0.216 1.216
23 H -0.206 1.206
24 N -0.026 5.026
25 O 0.047 5.953
26 H 0.076 0.924
27 H 0.076 0.924
28 H 0.077 0.923
29 H 0.087 0.913
30 H 0.088 0.912
31 H 0.109 0.891
32 H 0.117 0.883
33 H 0.196 0.804
34 H 0.246 0.754
35 H 0.093 0.907
36 H 0.082 0.918
37 H 0.078 0.922
38 H 0.099 0.901
39 H 0.087 0.913
40 H 0.045 0.955
41 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -16.913 -10.046 -3.541 19.988
hybrid contribution -0.820 0.788 0.356 1.192
sum -17.733 -9.258 -3.185 20.256
Atomic orbital electron populations
1.21766 0.94873 1.02168 1.02162 1.21571 0.96316 0.95055 1.03214
1.20241 0.83341 0.98978 1.05028 1.24469 0.96155 1.03870 0.85660
1.22398 0.89751 1.06748 1.01372 1.23619 0.97002 1.07369 0.90083
1.16890 0.81720 0.77478 0.86344 1.90760 1.86871 1.51036 1.12483
1.45884 1.05276 1.71880 1.11392 1.21946 0.81575 1.01677 0.95204
1.22438 0.92153 0.90963 0.92686 0.93324 1.23680 0.96297 1.00038
0.99944 1.21972 0.87548 0.96137 0.91439 1.45671 1.02698 1.14004
1.70375 1.18860 0.89727 0.97501 1.28215 0.90244 1.24803 0.95882
0.99010 1.00473 1.69850 1.08437 1.32270 1.45705 0.86185 0.79539
0.81071 0.79576 1.21496 1.21620 1.20646 1.74245 0.96962 1.15694
1.15705 1.84794 1.11141 1.65944 1.33433 0.92354 0.92413 0.92298
0.91255 0.91226 0.89078 0.88323 0.80376 0.75385 0.90673 0.91781
0.92235 0.90142 0.91314 0.95488 0.93641
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.70 9.91 37.16 0.37 -0.34 16
2 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16
3 C -0.04 -0.25 5.78 -27.88 -0.16 -0.41 16
4 C -0.04 -0.42 6.73 -35.35 -0.24 -0.65 16
5 C -0.18 -2.31 10.92 -39.08 -0.43 -2.74 16
6 C -0.02 -0.35 7.19 -82.53 -0.59 -0.94 16
7 C 0.59 11.09 7.85 -12.11 -0.10 10.99 16
8 O -0.54 -10.99 16.95 5.37 0.09 -10.90 16
9 N -0.69 -13.06 5.33 -61.09 -0.33 -13.38 16
10 C 0.12 2.24 5.52 -4.04 -0.02 2.22 16
11 C 0.13 2.48 4.10 -72.41 -0.30 2.19 16
12 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16
13 C -0.16 -2.94 8.03 -26.22 -0.21 -3.15 16
14 C 0.15 3.58 7.31 -8.53 -0.06 3.52 16
15 N -0.60 -15.04 3.65 -177.04 -0.65 -15.69 16
16 C -0.22 -5.98 10.54 -15.06 -0.16 -6.14 16
17 H 0.08 2.17 7.61 -52.49 -0.40 1.77 16
18 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16
19 N -0.92 -27.33 11.63 55.49 0.65 -26.68 16
20 Si 0.91 22.62 29.56 -169.99 -5.02 17.60 16
21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16
23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
24 N -0.33 -5.31 11.84 33.29 0.39 -4.91 16
25 O 0.12 1.67 11.18 17.24 0.19 1.86 16
26 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16
27 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16
28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16
29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16
31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16
32 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16
33 H 0.18 1.94 8.06 -52.49 -0.42 1.52 16
34 H 0.41 7.84 8.23 -40.82 -0.34 7.51 16
35 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16
36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
38 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16
39 H 0.07 1.77 7.32 -51.93 -0.38 1.39 16
40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16
41 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16
LS Contribution 352.10 15.07 5.31 5.31
Total: -1.00 -32.94 352.10 -7.69 -40.63
By element:
Atomic # 1 Polarization: 8.91 SS G_CDS: -6.17 Total: 2.74 kcal
Atomic # 6 Polarization: 5.58 SS G_CDS: -2.15 Total: 3.43 kcal
Atomic # 7 Polarization: -60.73 SS G_CDS: 0.07 Total: -60.66 kcal
Atomic # 8 Polarization: -9.32 SS G_CDS: 0.28 Total: -9.04 kcal
Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal
Total LS contribution 5.31 Total: 5.31 kcal
Total: -32.94 -7.69 -40.63 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001038860470.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.860 kcal
(2) G-P(sol) polarization free energy of solvation -32.943 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.917 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal
(6) G-S(sol) free energy of system = (1) + (5) 70.231 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds