Wall clock time and date at job start Tue Mar 31 2020 03:53:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53008 * 109.47250 * 2 1
4 4 C 1.50699 * 109.47148 * 180.02562 * 3 2 1
5 5 C 1.35311 * 126.66655 * 90.00308 * 4 3 2
6 6 C 1.42271 * 103.92169 * 180.02562 * 5 4 3
7 7 C 1.48332 * 126.93847 * 179.97438 * 6 5 4
8 8 O 1.21500 * 119.99962 * 0.02562 * 7 6 5
9 9 N 1.34779 * 120.00000 * 179.97438 * 7 6 5
10 10 C 1.46502 * 119.99973 * 180.02562 * 9 7 6
11 11 C 1.53001 * 109.47218 * 180.02562 * 10 9 7
12 12 H 1.08997 * 112.77634 * 56.27900 * 11 10 9
13 13 C 1.53494 * 113.46603 * 187.06031 * 11 10 9
14 14 C 1.53492 * 83.34095 * 140.84733 * 13 11 10
15 15 N 1.47063 * 87.98961 * 333.93094 * 14 13 11
16 16 C 1.36936 * 136.05985 * 207.38373 * 15 14 13
17 17 H 1.08001 * 119.99969 * 173.16974 * 16 15 14
18 18 C 1.38814 * 119.99955 * 353.17158 * 16 15 14
19 19 N 1.31621 * 119.99678 * 5.03689 * 18 16 15
20 20 Si 1.86800 * 119.99880 * 185.04019 * 18 16 15
21 21 H 1.48508 * 109.46943 * 94.98498 * 20 18 16
22 22 H 1.48498 * 109.46995 * 214.98519 * 20 18 16
23 23 H 1.48493 * 109.47191 * 334.98782 * 20 18 16
24 24 N 1.30983 * 106.12298 * 0.25811 * 6 5 4
25 25 O 1.20903 * 111.43896 * 359.53896 * 24 6 5
26 26 H 1.09000 * 109.46712 * 300.00033 * 1 2 3
27 27 H 1.09002 * 109.46950 * 59.99722 * 1 2 3
28 28 H 1.08991 * 109.46965 * 179.97438 * 1 2 3
29 29 H 1.08997 * 109.47406 * 240.00194 * 2 1 3
30 30 H 1.08993 * 109.47233 * 119.99756 * 2 1 3
31 31 H 1.08997 * 109.46757 * 59.99797 * 3 2 1
32 32 H 1.09002 * 109.46879 * 299.99824 * 3 2 1
33 33 H 1.07999 * 128.03677 * 359.97438 * 5 4 3
34 34 H 0.96995 * 119.99692 * 0.02562 * 9 7 6
35 35 H 1.09005 * 109.46958 * 59.99833 * 10 9 7
36 36 H 1.09007 * 109.46840 * 300.00484 * 10 9 7
37 37 H 1.08999 * 114.20581 * 254.43160 * 13 11 10
38 38 H 1.08991 * 114.20856 * 27.06350 * 13 11 10
39 39 H 1.09002 * 113.46997 * 219.14989 * 14 13 11
40 40 H 1.09001 * 113.46852 * 88.71157 * 14 13 11
41 41 H 0.97002 * 119.99494 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4426 0.0000
4 6 3.5471 1.4425 -0.0006
5 6 4.3546 1.4427 -1.0863
6 6 5.6669 1.4420 -0.5368
7 6 6.9471 1.4413 -1.2861
8 8 6.9398 1.4419 -2.5011
9 7 8.1183 1.4412 -0.6192
10 6 9.3826 1.4411 -1.3592
11 6 10.5515 1.4403 -0.3719
12 1 10.5136 0.6041 0.3262
13 6 11.9201 1.6132 -1.0449
14 6 12.2124 2.4899 0.1806
15 7 10.7667 2.7399 0.2819
16 6 9.9712 3.7437 0.7662
17 1 8.9032 3.7100 0.6088
18 6 10.5374 4.8048 1.4594
19 7 11.8460 4.8979 1.5658
20 14 9.4421 6.1003 2.2413
21 1 9.2078 5.7557 3.6667
22 1 10.1049 7.4264 2.1551
23 1 8.1429 6.1487 1.5238
24 7 5.5164 1.4358 0.7643
25 8 4.3478 1.4418 1.0740
26 1 -0.3633 0.5138 0.8900
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3633 -1.0276 -0.0005
29 1 1.8934 -0.5138 -0.8900
30 1 1.8933 -0.5138 0.8899
31 1 1.6767 1.9563 0.8900
32 1 1.6767 1.9564 -0.8900
33 1 4.0693 1.4426 -2.1279
34 1 8.1240 1.4411 0.3508
35 1 9.4367 2.3311 -1.9862
36 1 9.4365 0.5511 -1.9864
37 1 12.5132 0.6999 -1.0927
38 1 11.8884 2.1562 -1.9894
39 1 12.7920 3.3830 -0.0528
40 1 12.6169 1.9333 1.0260
41 1 12.2416 5.6391 2.0505
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001038860470.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:53:33
Heat of formation + Delta-G solvation = 48.530402 kcal
Electronic energy + Delta-G solvation = -23102.277158 eV
Core-core repulsion = 19600.373812 eV
Total energy + Delta-G solvation = -3501.903346 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 293.153 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-46.22362 -40.94027 -39.77347 -36.63186 -35.74282 -35.00483 -34.29851 -32.66126
-30.06861 -29.50284 -27.94864 -25.81730 -25.44225 -23.95976 -23.36154 -22.52832
-21.41560 -20.83551 -19.01877 -18.83787 -18.49902 -17.85299 -17.20029 -17.13469
-16.28948 -16.00288 -15.91654 -15.72007 -15.21386 -14.90440 -14.63773 -14.58559
-14.14585 -13.72681 -13.44483 -13.33655 -12.99986 -12.76905 -12.67142 -12.55151
-12.45763 -12.34990 -12.16411 -11.96025 -11.74064 -11.62260 -11.57534 -11.51219
-11.02205 -10.90591 -10.47649 -10.21756 -8.93144 -7.94879 -5.25550 -0.00464
0.61244 1.38498 1.39659 1.47696 1.77568 1.97698 2.04517 2.41598
2.83422 3.25916 3.36005 3.47941 3.85448 3.87653 3.98563 4.07221
4.12035 4.15848 4.27730 4.28266 4.55292 4.62060 4.64818 4.79440
4.81478 4.83295 4.92610 4.99291 5.02382 5.03195 5.22254 5.29041
5.29262 5.33024 5.50038 5.53559 5.68952 5.92041 6.22402 6.82076
6.89346 7.00868 7.57834 8.58458 9.23287
Molecular weight = 293.15amu
Principal moments of inertia in cm(-1)
A = 0.017317 B = 0.003807 C = 0.003262
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1616.484332 B = 7352.261243 C = 8582.781257
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.122 4.122
3 C -0.036 4.036
4 C -0.015 4.015
5 C -0.189 4.189
6 C -0.050 4.050
7 C 0.592 3.408
8 O -0.558 6.558
9 N -0.698 5.698
10 C 0.128 3.872
11 C 0.129 3.871
12 H 0.066 0.934
13 C -0.130 4.130
14 C 0.146 3.854
15 N -0.631 5.631
16 C -0.211 4.211
17 H 0.077 0.923
18 C -0.066 4.066
19 N -0.949 5.949
20 Si 0.965 3.035
21 H -0.286 1.286
22 H -0.292 1.292
23 H -0.276 1.276
24 N -0.352 5.352
25 O 0.128 5.872
26 H 0.063 0.937
27 H 0.065 0.935
28 H 0.059 0.941
29 H 0.065 0.935
30 H 0.062 0.938
31 H 0.107 0.893
32 H 0.121 0.879
33 H 0.196 0.804
34 H 0.408 0.592
35 H 0.051 0.949
36 H 0.090 0.910
37 H 0.103 0.897
38 H 0.084 0.916
39 H 0.034 0.966
40 H 0.023 0.977
41 H 0.248 0.752
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.082 -11.462 -4.305 23.520
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.160 4.160
3 C -0.074 4.074
4 C -0.078 4.078
5 C -0.211 4.211
6 C -0.207 4.207
7 C 0.376 3.624
8 O -0.437 6.437
9 N -0.347 5.347
10 C 0.004 3.996
11 C 0.023 3.977
12 H 0.083 0.917
13 C -0.168 4.168
14 C 0.021 3.979
15 N -0.358 5.358
16 C -0.339 4.339
17 H 0.095 0.905
18 C -0.259 4.259
19 N -0.598 5.598
20 Si 0.794 3.206
21 H -0.213 1.213
22 H -0.219 1.219
23 H -0.202 1.202
24 N -0.051 5.051
25 O 0.050 5.950
26 H 0.082 0.918
27 H 0.084 0.916
28 H 0.078 0.922
29 H 0.084 0.916
30 H 0.081 0.919
31 H 0.126 0.874
32 H 0.139 0.861
33 H 0.213 0.787
34 H 0.243 0.757
35 H 0.070 0.930
36 H 0.108 0.892
37 H 0.121 0.879
38 H 0.103 0.897
39 H 0.053 0.947
40 H 0.041 0.959
41 H 0.057 0.943
Dipole moment (debyes) X Y Z Total
from point charges -19.188 -11.163 -4.026 22.562
hybrid contribution -0.204 1.043 0.489 1.170
sum -19.392 -10.120 -3.538 22.158
Atomic orbital electron populations
1.21748 0.93621 1.02509 1.02844 1.21554 0.97302 0.94352 1.02765
1.20542 0.79978 0.99884 1.06975 1.25202 0.97576 1.00939 0.84090
1.22653 0.88419 1.07311 1.02764 1.23541 0.97184 1.09415 0.90595
1.17168 0.82355 0.76606 0.86234 1.90731 1.87366 1.52171 1.13407
1.45921 1.05565 1.72001 1.11225 1.21812 0.81339 1.01755 0.94734
1.22599 0.93521 0.88944 0.92639 0.91690 1.23488 0.95186 1.00505
0.97671 1.22003 0.86418 0.95798 0.93729 1.45993 1.03626 1.15652
1.70482 1.19094 0.89992 0.98086 1.26741 0.90492 1.25527 0.97044
1.01341 1.01966 1.70009 1.09770 1.32927 1.47122 0.85254 0.78025
0.78657 0.78650 1.21272 1.21888 1.20152 1.74241 0.98348 1.16738
1.15796 1.84756 1.10709 1.65210 1.34338 0.91800 0.91619 0.92196
0.91580 0.91943 0.87420 0.86065 0.78678 0.75669 0.93025 0.89159
0.87911 0.89746 0.94704 0.95918 0.94324
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.96 9.91 71.98 0.71 -0.25 16
2 C -0.12 -1.13 5.92 30.60 0.18 -0.95 16
3 C -0.04 -0.36 5.78 29.85 0.17 -0.18 16
4 C -0.01 -0.29 6.73 25.01 0.17 -0.12 16
5 C -0.19 -4.57 10.92 22.60 0.25 -4.32 16
6 C -0.05 -1.61 7.19 42.96 0.31 -1.30 16
7 C 0.59 22.05 7.85 86.93 0.68 22.74 16
8 O -0.56 -22.79 16.95 -3.72 -0.06 -22.86 16
9 N -0.70 -26.04 5.33 -465.47 -2.48 -28.52 16
10 C 0.13 4.64 5.52 86.38 0.48 5.11 16
11 C 0.13 4.94 4.10 41.78 0.17 5.11 16
12 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16
13 C -0.13 -4.48 8.03 30.93 0.25 -4.23 16
14 C 0.15 6.80 7.31 83.17 0.61 7.40 16
15 N -0.63 -31.69 3.65 -714.04 -2.61 -34.29 16
16 C -0.21 -11.83 10.54 84.03 0.89 -10.94 16
17 H 0.08 4.26 7.61 -2.91 -0.02 4.23 16
18 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16
19 N -0.95 -58.18 11.63 21.65 0.25 -57.92 16
20 Si 0.97 47.38 29.56 68.60 2.03 49.41 16
21 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16
22 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16
23 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16
24 N -0.35 -11.30 11.84 -49.52 -0.59 -11.88 16
25 O 0.13 3.30 11.18 71.88 0.80 4.10 16
26 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16
27 H 0.06 0.33 8.14 -2.39 -0.02 0.32 16
28 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16
29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16
30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16
31 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16
32 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16
33 H 0.20 3.89 8.06 -2.91 -0.02 3.86 16
34 H 0.41 15.61 8.23 -92.71 -0.76 14.85 16
35 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16
36 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16
37 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16
38 H 0.08 2.87 8.12 -2.39 -0.02 2.86 16
39 H 0.03 1.84 7.32 -2.39 -0.02 1.82 16
40 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16
41 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16
Total: -1.00 -72.88 352.10 2.95 -69.93
By element:
Atomic # 1 Polarization: 17.05 SS G_CDS: 0.27 Total: 17.32 kcal
Atomic # 6 Polarization: 9.39 SS G_CDS: 5.33 Total: 14.72 kcal
Atomic # 7 Polarization: -127.20 SS G_CDS: -5.42 Total: -132.62 kcal
Atomic # 8 Polarization: -19.50 SS G_CDS: 0.74 Total: -18.76 kcal
Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal
Total: -72.88 2.95 -69.93 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001038860470.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.463 kcal
(2) G-P(sol) polarization free energy of solvation -72.882 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.581 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.932 kcal
(6) G-S(sol) free energy of system = (1) + (5) 48.530 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds