Wall clock time and date at job start Tue Mar 31 2020 04:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.58704 * 2 1 4 4 C 1.53190 * 109.58620 * 120.42805 * 2 1 3 5 5 C 1.53041 * 109.31494 * 174.42283 * 4 2 1 6 6 H 1.09006 * 109.44703 * 58.64681 * 5 4 2 7 7 N 1.46499 * 109.46393 * 178.60894 * 5 4 2 8 8 C 1.36928 * 120.00288 * 205.06886 * 7 5 4 9 9 H 1.08003 * 120.00476 * 0.02562 * 8 7 5 10 10 C 1.38816 * 120.00050 * 180.02562 * 8 7 5 11 11 N 1.31614 * 119.99748 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00055 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47035 * 359.97438 * 12 10 8 14 14 H 1.48491 * 109.47018 * 119.99965 * 12 10 8 15 15 H 1.48504 * 109.47082 * 240.00195 * 12 10 8 16 16 C 1.53034 * 109.54000 * 298.63599 * 5 4 2 17 17 C 1.53202 * 109.31541 * 61.35935 * 16 5 4 18 18 N 1.46927 * 109.58726 * 239.71589 * 2 1 3 19 19 C 1.34777 * 120.63058 * 6.58113 * 18 2 1 20 20 O 1.21280 * 119.99964 * 354.97679 * 19 18 2 21 21 C 1.50701 * 119.99758 * 174.97091 * 19 18 2 22 22 C 1.50704 * 109.46839 * 179.97438 * 21 19 18 23 23 C 1.41373 * 128.00979 * 269.67692 * 22 21 19 24 24 N 1.30174 * 106.40107 * 179.89456 * 23 22 21 25 25 O 1.20928 * 111.59977 * 0.39749 * 24 23 22 26 26 C 1.34043 * 111.56658 * 359.73738 * 25 24 23 27 27 H 1.09005 * 109.46854 * 175.94593 * 1 2 3 28 28 H 1.09000 * 109.47311 * 295.94293 * 1 2 3 29 29 H 1.09001 * 109.47149 * 55.94977 * 1 2 3 30 30 H 1.08997 * 109.50307 * 54.47402 * 4 2 1 31 31 H 1.09000 * 109.49679 * 294.36928 * 4 2 1 32 32 H 0.97001 * 119.99475 * 25.07101 * 7 5 4 33 33 H 0.97003 * 119.99415 * 180.02562 * 11 10 8 34 34 H 1.08999 * 109.50491 * 181.31632 * 16 5 4 35 35 H 1.09004 * 109.49567 * 301.38153 * 16 5 4 36 36 H 1.08999 * 109.58259 * 65.15245 * 17 16 5 37 37 H 1.08995 * 109.58614 * 185.58354 * 17 16 5 38 38 H 1.08999 * 109.47224 * 300.00073 * 21 19 18 39 39 H 1.08999 * 109.46927 * 60.00346 * 21 19 18 40 40 H 1.08003 * 126.80145 * 0.04253 * 23 22 21 41 41 H 1.07995 * 126.77718 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7310 1.2445 5 6 3.5674 -0.8495 1.1691 6 1 4.0059 0.1461 1.0994 7 7 4.0652 -1.5186 2.3736 8 6 5.3491 -1.3011 2.7967 9 1 5.9949 -0.6358 2.2427 10 6 5.8209 -1.9356 3.9376 11 7 5.0341 -2.7467 4.6124 12 14 7.5728 -1.6393 4.5145 13 1 8.2458 -0.6941 3.5877 14 1 7.5525 -1.0621 5.8824 15 1 8.3128 -2.9267 4.5312 16 6 3.9569 -1.6656 -0.0655 17 6 3.4650 -0.9453 -1.3249 18 7 2.0225 -0.6981 -1.1953 19 6 1.1673 -1.1043 -2.1546 20 8 -0.0281 -0.9768 -1.9948 21 6 1.6966 -1.7169 -3.4257 22 6 0.5438 -2.0827 -4.3248 23 6 -0.1626 -3.3060 -4.3805 24 7 -1.0724 -3.1635 -5.3006 25 8 -1.0241 -2.0670 -5.8084 26 6 -0.0513 -1.3176 -5.2709 27 1 -0.3633 -1.0252 -0.0727 28 1 -0.3634 0.4496 0.9241 29 1 -0.3633 0.5754 -0.8515 30 1 1.6030 -1.7269 1.2892 31 1 1.7660 -0.1695 2.1366 32 1 3.4851 -2.1159 2.8713 33 1 5.3637 -3.1898 5.4099 34 1 5.0412 -1.7695 -0.1058 35 1 3.4988 -2.6530 -0.0082 36 1 3.9903 0.0038 -1.4316 37 1 3.6518 -1.5690 -2.1990 38 1 2.3409 -0.9994 -3.9339 39 1 2.2688 -2.6132 -3.1862 40 1 0.0154 -4.1840 -3.7773 41 1 0.2072 -0.3040 -5.5396 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044714961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:02 Heat of formation + Delta-G solvation = 52.335341 kcal Electronic energy + Delta-G solvation = -23703.597719 eV Core-core repulsion = 20201.859368 eV Total energy + Delta-G solvation = -3501.738352 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -45.07834 -40.46529 -37.53020 -34.92490 -34.54299 -32.95970 -32.06268 -31.96921 -29.55355 -28.61556 -26.97164 -24.36144 -23.24765 -22.97528 -22.55408 -21.23550 -20.15898 -18.98633 -18.01420 -17.68344 -17.17348 -16.68996 -16.01433 -15.66462 -14.93753 -14.84208 -14.13771 -13.97302 -13.77727 -13.67668 -13.36281 -13.21194 -12.94062 -12.71221 -12.33592 -12.12406 -12.01889 -11.62024 -11.46460 -11.34882 -10.96539 -10.87863 -10.81641 -10.54209 -10.43799 -10.25235 -9.89230 -9.76346 -9.68365 -8.97524 -8.95419 -8.45730 -7.03257 -5.82571 -3.12052 1.33581 2.06373 2.60735 2.99612 3.15226 3.38525 3.43911 3.46558 4.10562 4.48772 4.51687 4.52833 4.62629 4.88042 5.02049 5.12450 5.17394 5.24681 5.30843 5.43282 5.44136 5.47589 5.51813 5.58224 5.77645 5.82214 5.88174 5.97896 6.09563 6.21786 6.31462 6.40720 6.44207 6.49523 6.71521 6.85449 6.99314 7.48665 7.63727 8.08365 8.21572 8.35506 9.46894 10.04252 10.38734 11.39963 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.031964 B = 0.003115 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.781986 B = 8986.878141 C = 9293.592804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.147 3.853 3 H 0.070 0.930 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.047 0.953 7 N -0.724 5.724 8 C -0.240 4.240 9 H 0.071 0.929 10 C -0.013 4.013 11 N -0.931 5.931 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.292 1.292 16 C -0.152 4.152 17 C 0.106 3.894 18 N -0.603 5.603 19 C 0.514 3.486 20 O -0.532 6.532 21 C -0.068 4.068 22 C -0.180 4.180 23 C 0.005 3.995 24 N -0.368 5.368 25 O 0.095 5.905 26 C -0.048 4.048 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.188 0.812 41 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.544 4.678 -18.779 20.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.045 3.955 3 H 0.088 0.912 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.065 0.935 7 N -0.364 5.364 8 C -0.372 4.372 9 H 0.089 0.911 10 C -0.209 4.209 11 N -0.579 5.579 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.193 4.193 17 C -0.017 4.017 18 N -0.336 5.336 19 C 0.301 3.699 20 O -0.410 6.410 21 C -0.108 4.108 22 C -0.184 4.184 23 C -0.174 4.174 24 N -0.072 5.072 25 O 0.031 5.969 26 C -0.130 4.130 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.217 0.783 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.205 0.795 41 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -7.960 4.012 -19.132 21.107 hybrid contribution 1.753 0.134 1.182 2.119 sum -6.207 4.147 -17.950 19.440 Atomic orbital electron populations 1.22188 0.92873 1.03636 1.00323 1.21316 0.95369 0.94985 0.83878 0.91174 1.22298 0.97534 1.00968 0.96603 1.20159 0.90914 0.94946 0.87125 0.93462 1.42440 1.12981 1.54223 1.26789 1.19266 0.89112 1.22149 1.06630 0.91109 1.24759 0.98175 0.99787 0.98196 1.69673 1.35351 1.33364 1.19557 0.86140 0.84462 0.77291 0.78413 1.20538 1.21860 1.21880 1.22686 1.01762 1.00048 0.94809 1.21897 0.79497 1.00622 0.99707 1.48223 1.07652 1.57545 1.20210 1.20381 0.86573 0.78446 0.84488 1.90773 1.15555 1.55345 1.79307 1.20016 0.95088 1.03014 0.92681 1.20770 1.02236 0.94582 1.00828 1.24928 0.93760 1.00284 0.98462 1.73857 1.21174 1.00057 1.12083 1.84800 1.44085 1.18285 1.49757 1.25726 0.91115 0.99301 0.96841 0.91171 0.93962 0.91543 0.91810 0.90669 0.78258 0.93510 0.90561 0.92168 0.91344 0.90423 0.87587 0.87402 0.79492 0.76950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 7.59 37.15 0.28 -1.57 16 2 C 0.15 2.00 3.49 -67.60 -0.24 1.77 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.13 -2.16 4.84 -26.61 -0.13 -2.29 16 5 C 0.18 3.25 2.73 -67.89 -0.19 3.07 16 6 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 7 N -0.72 -17.27 5.12 -53.39 -0.27 -17.55 16 8 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 9 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 10 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 11 N -0.93 -27.55 13.06 55.49 0.72 -26.82 16 12 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 16 C -0.15 -2.33 5.66 -26.61 -0.15 -2.48 16 17 C 0.11 1.17 6.33 -3.70 -0.02 1.15 16 18 N -0.60 -7.40 2.97 -165.22 -0.49 -7.89 16 19 C 0.51 6.24 7.60 -10.99 -0.08 6.16 16 20 O -0.53 -8.10 11.43 5.56 0.06 -8.03 16 21 C -0.07 -0.57 4.69 -29.03 -0.14 -0.71 16 22 C -0.18 -1.76 4.82 -104.42 -0.50 -2.26 16 23 C 0.00 0.05 12.16 -17.06 -0.21 -0.16 16 24 N -0.37 -4.60 12.07 30.35 0.37 -4.23 16 25 O 0.10 1.04 11.20 17.17 0.19 1.24 16 26 C -0.05 -0.41 12.26 29.74 0.36 -0.05 16 27 H 0.07 1.10 6.73 -51.93 -0.35 0.76 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.95 6.77 -51.93 -0.35 0.60 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.38 9.93 7.80 -40.82 -0.32 9.61 16 33 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.64 5.96 -51.93 -0.31 0.33 16 38 H 0.11 0.62 8.11 -51.93 -0.42 0.20 16 39 H 0.11 0.78 7.48 -51.93 -0.39 0.40 16 40 H 0.19 1.70 8.06 -52.48 -0.42 1.28 16 41 H 0.21 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 334.50 15.07 5.04 5.04 Total: -1.00 -32.42 334.50 -6.56 -38.98 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -5.91 Total: 6.92 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -1.25 Total: -4.35 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.33 Total: -56.49 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: 0.26 Total: -6.80 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.42 -6.56 -38.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044714961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.320 kcal (2) G-P(sol) polarization free energy of solvation -32.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds