Wall clock time and date at job start Tue Mar 31 2020 04:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.58704 * 2 1 4 4 C 1.53190 * 109.58620 * 120.42805 * 2 1 3 5 5 C 1.53041 * 109.31494 * 174.42283 * 4 2 1 6 6 H 1.09006 * 109.44703 * 58.64681 * 5 4 2 7 7 N 1.46499 * 109.46393 * 178.60894 * 5 4 2 8 8 C 1.36928 * 120.00288 * 205.06886 * 7 5 4 9 9 H 1.08003 * 120.00476 * 0.02562 * 8 7 5 10 10 C 1.38816 * 120.00050 * 180.02562 * 8 7 5 11 11 N 1.31614 * 119.99748 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00055 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47035 * 359.97438 * 12 10 8 14 14 H 1.48491 * 109.47018 * 119.99965 * 12 10 8 15 15 H 1.48504 * 109.47082 * 240.00195 * 12 10 8 16 16 C 1.53034 * 109.54000 * 298.63599 * 5 4 2 17 17 C 1.53202 * 109.31541 * 61.35935 * 16 5 4 18 18 N 1.46927 * 109.58726 * 239.71589 * 2 1 3 19 19 C 1.34777 * 120.63058 * 6.58113 * 18 2 1 20 20 O 1.21280 * 119.99964 * 354.97679 * 19 18 2 21 21 C 1.50701 * 119.99758 * 174.97091 * 19 18 2 22 22 C 1.50704 * 109.46839 * 179.97438 * 21 19 18 23 23 C 1.41373 * 128.00979 * 269.67692 * 22 21 19 24 24 N 1.30174 * 106.40107 * 179.89456 * 23 22 21 25 25 O 1.20928 * 111.59977 * 0.39749 * 24 23 22 26 26 C 1.34043 * 111.56658 * 359.73738 * 25 24 23 27 27 H 1.09005 * 109.46854 * 175.94593 * 1 2 3 28 28 H 1.09000 * 109.47311 * 295.94293 * 1 2 3 29 29 H 1.09001 * 109.47149 * 55.94977 * 1 2 3 30 30 H 1.08997 * 109.50307 * 54.47402 * 4 2 1 31 31 H 1.09000 * 109.49679 * 294.36928 * 4 2 1 32 32 H 0.97001 * 119.99475 * 25.07101 * 7 5 4 33 33 H 0.97003 * 119.99415 * 180.02562 * 11 10 8 34 34 H 1.08999 * 109.50491 * 181.31632 * 16 5 4 35 35 H 1.09004 * 109.49567 * 301.38153 * 16 5 4 36 36 H 1.08999 * 109.58259 * 65.15245 * 17 16 5 37 37 H 1.08995 * 109.58614 * 185.58354 * 17 16 5 38 38 H 1.08999 * 109.47224 * 300.00073 * 21 19 18 39 39 H 1.08999 * 109.46927 * 60.00346 * 21 19 18 40 40 H 1.08003 * 126.80145 * 0.04253 * 23 22 21 41 41 H 1.07995 * 126.77718 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7310 1.2445 5 6 3.5674 -0.8495 1.1691 6 1 4.0059 0.1461 1.0994 7 7 4.0652 -1.5186 2.3736 8 6 5.3491 -1.3011 2.7967 9 1 5.9949 -0.6358 2.2427 10 6 5.8209 -1.9356 3.9376 11 7 5.0341 -2.7467 4.6124 12 14 7.5728 -1.6393 4.5145 13 1 8.2458 -0.6941 3.5877 14 1 7.5525 -1.0621 5.8824 15 1 8.3128 -2.9267 4.5312 16 6 3.9569 -1.6656 -0.0655 17 6 3.4650 -0.9453 -1.3249 18 7 2.0225 -0.6981 -1.1953 19 6 1.1673 -1.1043 -2.1546 20 8 -0.0281 -0.9768 -1.9948 21 6 1.6966 -1.7169 -3.4257 22 6 0.5438 -2.0827 -4.3248 23 6 -0.1626 -3.3060 -4.3805 24 7 -1.0724 -3.1635 -5.3006 25 8 -1.0241 -2.0670 -5.8084 26 6 -0.0513 -1.3176 -5.2709 27 1 -0.3633 -1.0252 -0.0727 28 1 -0.3634 0.4496 0.9241 29 1 -0.3633 0.5754 -0.8515 30 1 1.6030 -1.7269 1.2892 31 1 1.7660 -0.1695 2.1366 32 1 3.4851 -2.1159 2.8713 33 1 5.3637 -3.1898 5.4099 34 1 5.0412 -1.7695 -0.1058 35 1 3.4988 -2.6530 -0.0082 36 1 3.9903 0.0038 -1.4316 37 1 3.6518 -1.5690 -2.1990 38 1 2.3409 -0.9994 -3.9339 39 1 2.2688 -2.6132 -3.1862 40 1 0.0154 -4.1840 -3.7773 41 1 0.2072 -0.3040 -5.5396 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044714961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:00 Heat of formation + Delta-G solvation = 31.103409 kcal Electronic energy + Delta-G solvation = -23704.518405 eV Core-core repulsion = 20201.859368 eV Total energy + Delta-G solvation = -3502.659038 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.85655 -41.48357 -38.74784 -36.17294 -35.65788 -34.03180 -33.63954 -32.88876 -31.05238 -29.57764 -28.19116 -26.00744 -24.39814 -24.07987 -23.45349 -22.21895 -21.48460 -20.03164 -19.08774 -18.74423 -18.49044 -17.63555 -17.02215 -16.71621 -16.58214 -15.79290 -15.47901 -15.42545 -14.99379 -14.81917 -14.44829 -14.40866 -13.93619 -13.73022 -13.43031 -13.28820 -13.10868 -12.94712 -12.89179 -12.60916 -12.54669 -12.12554 -12.09377 -12.00729 -11.90616 -11.68295 -11.33130 -11.25099 -10.88450 -10.46432 -9.93432 -9.51159 -8.99225 -7.92123 -5.20706 0.64212 1.28084 1.49428 1.49758 1.59582 1.70748 2.12519 2.47277 2.57933 3.39314 3.41875 3.64308 3.76723 3.83286 3.91537 4.03495 4.10592 4.15929 4.26045 4.32323 4.39066 4.61267 4.63295 4.66448 4.74494 4.78446 4.84876 4.86002 4.87583 5.06284 5.09556 5.16579 5.19498 5.30205 5.45567 5.53288 5.59189 5.75438 6.29697 6.55141 7.28798 7.34945 7.35507 8.11960 8.34236 9.31879 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.031964 B = 0.003115 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.781986 B = 8986.878141 C = 9293.592804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.153 3.847 3 H 0.087 0.913 4 C -0.124 4.124 5 C 0.172 3.828 6 H 0.050 0.950 7 N -0.740 5.740 8 C -0.231 4.231 9 H 0.082 0.918 10 C -0.080 4.080 11 N -0.973 5.973 12 Si 0.970 3.030 13 H -0.261 1.261 14 H -0.298 1.298 15 H -0.297 1.297 16 C -0.143 4.143 17 C 0.114 3.886 18 N -0.604 5.604 19 C 0.510 3.490 20 O -0.567 6.567 21 C -0.058 4.058 22 C -0.195 4.195 23 C -0.009 4.009 24 N -0.402 5.402 25 O 0.083 5.917 26 C -0.035 4.035 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.369 0.631 33 H 0.248 0.752 34 H 0.067 0.933 35 H 0.043 0.957 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.145 0.855 39 H 0.124 0.876 40 H 0.196 0.804 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.142 6.338 -21.134 22.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.049 3.951 3 H 0.105 0.895 4 C -0.163 4.163 5 C 0.064 3.936 6 H 0.068 0.932 7 N -0.379 5.379 8 C -0.363 4.363 9 H 0.099 0.901 10 C -0.272 4.272 11 N -0.625 5.625 12 Si 0.800 3.200 13 H -0.185 1.185 14 H -0.226 1.226 15 H -0.224 1.224 16 C -0.184 4.184 17 C -0.008 4.008 18 N -0.338 5.338 19 C 0.300 3.700 20 O -0.447 6.447 21 C -0.098 4.098 22 C -0.200 4.200 23 C -0.188 4.188 24 N -0.109 5.109 25 O 0.021 5.979 26 C -0.117 4.117 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.200 0.800 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.108 0.892 37 H 0.135 0.865 38 H 0.162 0.838 39 H 0.142 0.858 40 H 0.213 0.787 41 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -6.548 5.710 -21.560 23.245 hybrid contribution 1.240 -0.337 1.876 2.274 sum -5.308 5.373 -19.684 21.083 Atomic orbital electron populations 1.22026 0.93128 1.02141 1.00479 1.21187 0.95002 0.95491 0.83372 0.89545 1.22152 0.96065 1.00220 0.97890 1.20443 0.91988 0.94870 0.86309 0.93216 1.42703 1.12172 1.54398 1.28631 1.19680 0.90054 1.20636 1.05898 0.90053 1.25558 1.01997 1.00604 0.99063 1.69837 1.37184 1.35290 1.20170 0.85111 0.80197 0.77038 0.77675 1.18499 1.22603 1.22440 1.22464 1.01160 0.99196 0.95578 1.21958 0.78508 1.01839 0.98487 1.48270 1.08310 1.57422 1.19760 1.21036 0.86047 0.77577 0.85328 1.90771 1.17166 1.56590 1.80155 1.20072 0.94930 1.04315 0.90486 1.20987 1.03075 0.94184 1.01706 1.25301 0.93745 1.01475 0.98264 1.73852 1.22505 1.01126 1.13368 1.84758 1.44906 1.18207 1.50008 1.26514 0.89382 1.00198 0.95566 0.93446 0.93499 0.91642 0.93598 0.91743 0.80037 0.94275 0.91411 0.93779 0.89232 0.86517 0.83762 0.85786 0.78682 0.73020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.25 7.59 71.98 0.55 -2.70 16 2 C 0.15 3.89 3.49 44.97 0.16 4.05 16 3 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 4 C -0.12 -3.94 4.84 30.67 0.15 -3.80 16 5 C 0.17 6.10 2.73 45.02 0.12 6.22 16 6 H 0.05 1.75 8.08 -2.38 -0.02 1.73 16 7 N -0.74 -35.62 5.12 -322.82 -1.65 -37.27 16 8 C -0.23 -12.17 9.93 84.04 0.83 -11.33 16 9 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 10 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 11 N -0.97 -59.04 13.06 21.65 0.28 -58.76 16 12 Si 0.97 44.82 29.55 68.60 2.03 46.85 16 13 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 14 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 15 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 16 C -0.14 -4.11 5.66 30.67 0.17 -3.94 16 17 C 0.11 2.05 6.33 86.37 0.55 2.60 16 18 N -0.60 -13.01 2.97 -795.03 -2.36 -15.37 16 19 C 0.51 10.89 7.60 87.66 0.67 11.56 16 20 O -0.57 -16.36 11.43 -3.03 -0.03 -16.39 16 21 C -0.06 -0.74 4.69 29.10 0.14 -0.60 16 22 C -0.20 -3.28 4.82 -19.74 -0.10 -3.38 16 23 C -0.01 -0.20 12.16 85.71 1.04 0.84 16 24 N -0.40 -9.87 12.07 -59.27 -0.72 -10.58 16 25 O 0.08 1.73 11.20 71.60 0.80 2.53 16 26 C -0.04 -0.51 12.26 67.18 0.82 0.32 16 27 H 0.05 1.49 6.73 -2.38 -0.02 1.48 16 28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.79 6.77 -2.39 -0.02 1.78 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 31 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.37 19.70 7.80 -92.71 -0.72 18.97 16 33 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.12 1.26 5.96 -2.39 -0.01 1.25 16 38 H 0.14 0.77 8.11 -2.39 -0.02 0.75 16 39 H 0.12 1.23 7.48 -2.39 -0.02 1.21 16 40 H 0.20 3.46 8.06 -2.91 -0.02 3.44 16 41 H 0.25 1.19 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -72.94 334.50 4.23 -68.71 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.32 Total: 24.49 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 5.57 Total: -4.20 kcal Atomic # 7 Polarization: -117.54 SS G_CDS: -4.45 Total: -121.99 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.77 Total: -13.86 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -72.94 4.23 -68.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044714961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.810 kcal (2) G-P(sol) polarization free energy of solvation -72.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds