Wall clock time and date at job start Tue Mar 31 2020 03:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34482 * 126.83427 * 2 1 4 4 N 1.36441 * 108.85794 * 180.25364 * 3 2 1 5 5 H 0.97003 * 124.85576 * 179.77299 * 4 3 2 6 6 C 1.34663 * 110.29920 * 359.75506 * 4 3 2 7 7 C 1.36773 * 108.39509 * 359.97438 * 6 4 3 8 8 C 1.47257 * 126.94229 * 179.97438 * 7 6 4 9 9 O 1.21627 * 120.00215 * 187.00531 * 8 7 6 10 10 N 1.34775 * 119.99938 * 7.01507 * 8 7 6 11 11 C 1.46495 * 120.00303 * 5.60576 * 10 8 7 12 12 C 1.46508 * 120.00056 * 185.60403 * 10 8 7 13 13 H 1.09004 * 110.88153 * 3.87653 * 12 10 8 14 14 C 1.55126 * 110.93860 * 127.95365 * 12 10 8 15 15 N 1.47424 * 104.72036 * 155.29074 * 14 12 10 16 16 C 1.36941 * 125.65037 * 155.81778 * 15 14 12 17 17 H 1.07998 * 119.99355 * 5.77392 * 16 15 14 18 18 C 1.38804 * 119.99737 * 185.77284 * 16 15 14 19 19 N 1.31612 * 120.00794 * 7.90189 * 18 16 15 20 20 Si 1.86813 * 119.99550 * 187.90790 * 18 16 15 21 21 H 1.48498 * 109.46984 * 265.01430 * 20 18 16 22 22 H 1.48500 * 109.47123 * 145.01412 * 20 18 16 23 23 H 1.48499 * 109.46958 * 25.01563 * 20 18 16 24 24 C 1.47030 * 108.70506 * 335.55483 * 15 14 12 25 25 C 1.54331 * 107.26715 * 1.28496 * 24 15 14 26 26 H 1.08992 * 110.72359 * 263.82972 * 25 24 15 27 27 O 1.42900 * 110.71586 * 140.73046 * 25 24 15 28 28 H 1.09002 * 109.46997 * 270.14273 * 1 2 3 29 29 H 1.08991 * 109.47257 * 30.14582 * 1 2 3 30 30 H 1.09002 * 109.47196 * 150.14552 * 1 2 3 31 31 H 1.08001 * 125.57071 * 359.96938 * 3 2 1 32 32 H 1.07998 * 125.80616 * 180.02562 * 6 4 3 33 33 H 1.09000 * 109.47035 * 275.74302 * 11 10 8 34 34 H 1.09001 * 109.47046 * 35.73436 * 11 10 8 35 35 H 1.08995 * 109.47620 * 155.73749 * 11 10 8 36 36 H 1.09004 * 110.49589 * 36.45330 * 14 12 10 37 37 H 1.08993 * 110.34679 * 274.05185 * 14 12 10 38 38 H 0.97001 * 120.00809 * 179.97438 * 19 18 16 39 39 H 1.08998 * 109.88578 * 120.70316 * 24 15 14 40 40 H 1.08997 * 109.88292 * 241.71655 * 24 15 14 41 41 H 0.96705 * 113.99718 * 61.45587 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6553 -0.0057 5 1 4.3840 1.2413 -0.0101 6 6 3.6657 -0.6903 -0.0041 7 6 2.3864 -1.1741 0.0034 8 6 1.9750 -2.5880 0.0071 9 8 0.8006 -2.8800 -0.1147 10 7 2.8998 -3.5586 0.1456 11 6 4.2961 -3.2069 0.4151 12 6 2.5087 -4.9655 0.0265 13 1 1.4558 -5.0548 -0.2409 14 6 3.4114 -5.7074 -0.9938 15 7 3.3491 -7.1235 -0.5888 16 6 3.5777 -8.1982 -1.4062 17 1 3.9190 -8.0433 -2.4190 18 6 3.3707 -9.4865 -0.9328 19 7 2.8091 -9.6736 0.2427 20 14 3.8894 -10.9551 -1.9643 21 1 2.7293 -11.4393 -2.7548 22 1 4.3690 -12.0416 -1.0728 23 1 4.9823 -10.5519 -2.8853 24 6 3.0070 -7.1908 0.8396 25 6 2.8181 -5.7412 1.3342 26 1 3.7324 -5.3690 1.7962 27 8 1.7220 -5.6574 2.2472 28 1 -0.3633 0.0026 1.0277 29 1 -0.3633 0.8886 -0.5160 30 1 -0.3634 -0.8913 -0.5116 31 1 1.9868 2.1058 -0.0005 32 1 4.5664 -1.2861 -0.0072 33 1 4.8031 -2.9864 -0.5242 34 1 4.3316 -2.3299 1.0616 35 1 4.7926 -4.0423 0.9086 36 1 4.4362 -5.3406 -0.9342 37 1 3.0217 -5.5844 -2.0042 38 1 2.6641 -10.5739 0.5734 39 1 2.0820 -7.7517 0.9733 40 1 3.8147 -7.6711 1.3919 41 1 1.8355 -6.1880 3.0477 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047628344.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:59 Heat of formation + Delta-G solvation = -14.390877 kcal Electronic energy + Delta-G solvation = -24116.155609 eV Core-core repulsion = 20611.523791 eV Total energy + Delta-G solvation = -3504.631818 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -42.20105 -40.73085 -39.11872 -36.72676 -36.33258 -33.91429 -33.29349 -31.44544 -29.89019 -28.80308 -28.19270 -27.24269 -26.32947 -23.79614 -22.29189 -21.49813 -20.92292 -19.73001 -19.00218 -18.64835 -18.33650 -17.46859 -16.95522 -16.45253 -16.33925 -15.74584 -15.31898 -15.10595 -14.91143 -14.54720 -14.48219 -14.17579 -14.01297 -13.89016 -13.65164 -13.55342 -13.30780 -13.17531 -12.91130 -12.73586 -12.62274 -12.55491 -12.19205 -12.05932 -11.86895 -11.58738 -10.98522 -10.80686 -10.73223 -9.72490 -9.43532 -9.12229 -8.94132 -7.85615 -5.27037 0.82823 1.47032 1.48886 1.53537 1.58396 1.95585 2.47964 2.53276 2.58745 3.14835 3.33726 3.59473 3.86680 3.88802 4.01415 4.09896 4.13264 4.28499 4.29922 4.42997 4.47603 4.54756 4.63710 4.72161 4.80526 4.86511 4.91490 4.95124 5.08817 5.16792 5.28356 5.36475 5.47989 5.60216 5.67101 5.87001 6.01222 6.14977 6.55581 6.77580 6.85377 7.03103 7.35655 7.69444 8.32824 9.21787 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.030091 B = 0.003664 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.279735 B = 7639.378513 C = 7862.886275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.156 4.156 3 C -0.005 4.005 4 N -0.532 5.532 5 H 0.440 0.560 6 C 0.055 3.945 7 C -0.267 4.267 8 C 0.576 3.424 9 O -0.596 6.596 10 N -0.599 5.599 11 C 0.052 3.948 12 C 0.147 3.853 13 H 0.068 0.932 14 C 0.136 3.864 15 N -0.619 5.619 16 C -0.247 4.247 17 H 0.087 0.913 18 C -0.063 4.063 19 N -0.949 5.949 20 Si 0.982 3.018 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.264 1.264 24 C 0.156 3.844 25 C 0.084 3.916 26 H 0.087 0.913 27 O -0.573 6.573 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.203 0.797 32 H 0.221 0.779 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.039 0.961 38 H 0.248 0.752 39 H 0.034 0.966 40 H 0.014 0.986 41 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.879 23.959 2.416 25.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.162 4.162 3 C -0.133 4.133 4 N -0.127 5.127 5 H 0.281 0.719 6 C -0.082 4.082 7 C -0.277 4.277 8 C 0.369 3.631 9 O -0.478 6.478 10 N -0.330 5.330 11 C -0.089 4.089 12 C 0.041 3.959 13 H 0.087 0.913 14 C 0.010 3.990 15 N -0.347 5.347 16 C -0.376 4.376 17 H 0.105 0.895 18 C -0.257 4.257 19 N -0.597 5.597 20 Si 0.810 3.190 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.189 1.189 24 C 0.030 3.970 25 C 0.024 3.976 26 H 0.104 0.896 27 O -0.380 6.380 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.220 0.780 32 H 0.237 0.763 33 H 0.106 0.894 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.032 0.968 41 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 7.155 24.132 1.905 25.243 hybrid contribution 0.137 -1.762 0.092 1.770 sum 7.291 22.370 1.998 23.613 Atomic orbital electron populations 1.20105 0.90387 1.01955 1.01355 1.20796 0.95858 0.91523 1.07978 1.21954 0.82484 0.99582 1.09274 1.41625 1.08658 1.06445 1.56001 0.71931 1.23344 0.98751 0.84584 1.01567 1.20298 0.95196 0.90977 1.21272 1.18133 0.84444 0.85589 0.74920 1.90701 1.19770 1.84295 1.53071 1.47542 1.10220 1.04164 1.71064 1.22667 0.80048 1.03326 1.02811 1.21905 0.99201 0.80325 0.94436 0.91344 1.21944 0.97414 0.83903 0.95736 1.44525 1.82722 1.00881 1.06563 1.19483 1.37758 0.84819 0.95539 0.89521 1.25715 1.01000 1.00200 0.98736 1.70158 1.48333 1.20469 1.20721 0.85018 0.77920 0.78594 0.77495 1.21698 1.21796 1.18857 1.21687 0.98549 0.92256 0.84546 1.23330 0.89282 0.95181 0.89815 0.89564 1.86505 1.44473 1.72308 1.34720 0.92530 0.89881 0.94000 0.77976 0.76283 0.89426 0.87651 0.90250 0.92292 0.94243 0.94238 0.94828 0.96758 0.76028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.10 10.04 71.24 0.72 -1.38 16 2 C -0.16 -3.85 6.35 -18.51 -0.12 -3.97 16 3 C 0.00 -0.07 11.82 83.12 0.98 0.92 16 4 N -0.53 -5.37 5.90 -194.56 -1.15 -6.51 16 5 H 0.44 0.55 8.96 -92.71 -0.83 -0.28 16 6 C 0.06 0.86 9.85 83.92 0.83 1.69 16 7 C -0.27 -7.29 6.12 -19.04 -0.12 -7.41 16 8 C 0.58 21.25 7.66 86.61 0.66 21.92 16 9 O -0.60 -28.11 14.69 -4.12 -0.06 -28.17 16 10 N -0.60 -19.63 2.91 -818.46 -2.38 -22.01 16 11 C 0.05 1.04 7.26 127.77 0.93 1.97 16 12 C 0.15 6.09 3.17 46.46 0.15 6.23 16 13 H 0.07 3.49 7.04 -2.38 -0.02 3.47 16 14 C 0.14 5.77 6.79 86.93 0.59 6.36 16 15 N -0.62 -32.46 3.39 -691.53 -2.35 -34.81 16 16 C -0.25 -13.98 10.26 84.03 0.86 -13.12 16 17 H 0.09 4.64 7.84 -2.91 -0.02 4.62 16 18 C -0.06 -3.61 5.45 84.86 0.46 -3.15 16 19 N -0.95 -57.46 10.47 21.65 0.23 -57.23 16 20 Si 0.98 45.78 29.56 68.60 2.03 47.81 16 21 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 24 C 0.16 7.84 5.23 86.73 0.45 8.29 16 25 C 0.08 3.40 3.86 31.79 0.12 3.52 16 26 H 0.09 2.92 6.47 -2.39 -0.02 2.90 16 27 O -0.57 -23.23 13.40 -148.98 -2.00 -25.22 16 28 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.04 1.40 6.76 -2.39 -0.02 1.39 16 31 H 0.20 1.37 8.06 -2.91 -0.02 1.35 16 32 H 0.22 1.93 4.41 -2.91 -0.01 1.91 16 33 H 0.09 1.27 7.42 -2.39 -0.02 1.25 16 34 H 0.11 1.50 5.29 -2.39 -0.01 1.49 16 35 H 0.08 1.58 6.36 -2.39 -0.02 1.57 16 36 H 0.06 2.14 6.95 -2.38 -0.02 2.12 16 37 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 39 H 0.03 1.98 6.77 -2.39 -0.02 1.96 16 40 H 0.01 0.76 7.99 -2.39 -0.02 0.74 16 41 H 0.39 12.22 9.11 -74.05 -0.67 11.55 16 Total: -1.00 -86.61 327.67 0.42 -86.19 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -0.42 Total: 18.11 kcal Atomic # 6 Polarization: 15.34 SS G_CDS: 6.52 Total: 21.86 kcal Atomic # 7 Polarization: -114.92 SS G_CDS: -5.65 Total: -120.57 kcal Atomic # 8 Polarization: -51.34 SS G_CDS: -2.06 Total: -53.39 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -86.61 0.42 -86.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047628344.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.796 kcal (2) G-P(sol) polarization free energy of solvation -86.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds