Wall clock time and date at job start Tue Mar 31 2020 02:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00078 * 2 1 4 4 H 1.48500 * 109.47147 * 269.99736 * 3 2 1 5 5 H 1.48495 * 109.47160 * 29.99905 * 3 2 1 6 6 H 1.48501 * 109.47180 * 149.99988 * 3 2 1 7 7 C 1.38817 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00159 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99577 * 0.02562 * 7 2 1 10 10 C 1.46586 * 125.30240 * 179.97438 * 9 7 2 11 11 C 1.53260 * 108.15750 * 177.88404 * 10 9 7 12 12 H 1.09005 * 112.58306 * 222.76093 * 11 10 9 13 13 C 1.54799 * 109.75011 * 95.76444 * 11 10 9 14 14 C 1.54940 * 101.50192 * 212.29172 * 13 11 10 15 15 N 1.47350 * 104.89339 * 37.23467 * 14 13 11 16 16 C 1.34769 * 125.53198 * 156.54047 * 15 14 13 17 17 O 1.21280 * 120.00015 * 179.97438 * 16 15 14 18 18 C 1.50694 * 119.99944 * 0.02562 * 16 15 14 19 19 H 1.09000 * 110.43667 * 302.53769 * 18 16 15 20 20 C 1.54631 * 110.48907 * 179.97438 * 18 16 15 21 21 C 1.54480 * 101.76614 * 216.52170 * 20 18 16 22 22 N 1.46762 * 105.47493 * 25.41785 * 21 20 18 23 23 C 1.34427 * 111.29849 * 342.97920 * 22 21 20 24 24 O 1.21279 * 124.94307 * 180.41172 * 23 22 21 25 25 C 1.47219 * 108.93984 * 336.54129 * 15 14 13 26 26 H 1.08999 * 112.28697 * 235.66792 * 25 15 14 27 27 C 1.46604 * 125.31008 * 359.97438 * 9 7 2 28 28 H 0.96999 * 119.99421 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.73539 * 297.56657 * 10 9 7 30 30 H 1.09001 * 109.74108 * 58.19739 * 10 9 7 31 31 H 1.09002 * 111.01965 * 94.24087 * 13 11 10 32 32 H 1.08999 * 111.02291 * 330.34770 * 13 11 10 33 33 H 1.09002 * 110.35727 * 278.38353 * 14 13 11 34 34 H 1.08998 * 110.44600 * 156.13722 * 14 13 11 35 35 H 1.09002 * 110.96641 * 334.63807 * 20 18 16 36 36 H 1.08994 * 110.97181 * 98.40048 * 20 18 16 37 37 H 1.09002 * 110.24170 * 144.41039 * 21 20 18 38 38 H 1.08997 * 110.24715 * 266.32190 * 21 20 18 39 39 H 0.96994 * 124.35284 * 162.96736 * 22 21 20 40 40 H 1.08999 * 109.91371 * 317.17562 * 27 9 7 41 41 H 1.09003 * 109.91009 * 78.26189 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 1.9380 -3.7198 0.0005 11 6 0.8153 -4.7618 0.0543 12 1 1.0340 -5.5776 0.7434 13 6 0.4830 -5.2470 -1.3776 14 6 -1.0348 -5.5361 -1.2614 15 7 -1.5558 -4.4762 -0.3803 16 6 -2.8327 -4.0468 -0.3420 17 8 -3.1530 -3.1645 0.4260 18 6 -3.8627 -4.6638 -1.2527 19 1 -3.5587 -4.5629 -2.2946 20 6 -5.2458 -4.0105 -1.0265 21 6 -6.1959 -5.2160 -1.2016 22 7 -5.3921 -6.3991 -0.8731 23 6 -4.0775 -6.1191 -0.9000 24 8 -3.1926 -6.9171 -0.6742 25 6 -0.4551 -3.9623 0.4515 26 1 -0.6787 -4.0231 1.5165 27 6 -0.1342 -2.5236 0.0005 28 1 -0.4849 0.8401 -0.0004 29 1 2.5231 -3.8559 -0.9089 30 1 2.5830 -3.8285 0.8725 31 1 1.0361 -6.1541 -1.6212 32 1 0.6769 -4.4640 -2.1107 33 1 -1.2010 -6.5163 -0.8145 34 1 -1.5089 -5.4816 -2.2414 35 1 -5.3220 -3.5967 -0.0210 36 1 -5.4436 -3.2457 -1.7774 37 1 -7.0409 -5.1326 -0.5181 38 1 -6.5485 -5.2718 -2.2315 39 1 -5.7617 -7.2710 -0.6635 40 1 -0.5734 -1.8096 0.6972 41 1 -0.5231 -2.3504 -1.0029 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076124928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:00 Heat of formation + Delta-G solvation = -52.032590 kcal Electronic energy + Delta-G solvation = -24830.522513 eV Core-core repulsion = 21324.258428 eV Total energy + Delta-G solvation = -3506.264085 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.12361 -40.81867 -39.17446 -37.42376 -36.57727 -34.14467 -32.62062 -32.19642 -30.40817 -29.07769 -28.04913 -26.47096 -24.31024 -23.06377 -22.47772 -22.07184 -20.83699 -19.81188 -18.95933 -18.52266 -18.27579 -17.72389 -17.07814 -16.60077 -16.16112 -15.74041 -15.42028 -15.11742 -14.99586 -14.69765 -14.50880 -14.20981 -14.09647 -13.73760 -13.54209 -13.44714 -13.22916 -13.00689 -12.77903 -12.75081 -12.55470 -12.16044 -12.12258 -11.87441 -11.73277 -11.50875 -11.43416 -11.07502 -10.84391 -10.73948 -10.08504 -9.56720 -8.92094 -7.79230 -5.24747 1.26298 1.43508 1.46973 1.56015 1.59194 2.00704 2.42546 2.48637 3.22448 3.27343 3.31556 3.48009 3.61960 3.73029 3.85698 3.97328 3.99927 4.14338 4.32941 4.38907 4.47173 4.49240 4.55584 4.71125 4.79537 4.90235 4.93164 4.99709 5.08254 5.15427 5.19074 5.24768 5.45698 5.47861 5.55688 5.75105 5.79221 5.98288 6.23918 6.58515 7.05880 7.12571 7.18306 7.77325 8.38782 9.23561 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022750 B = 0.004807 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.458543 B = 5823.328480 C = 6800.358579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.070 4.070 3 Si 0.984 3.016 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.244 4.244 8 H 0.089 0.911 9 N -0.624 5.624 10 C 0.138 3.862 11 C -0.094 4.094 12 H 0.122 0.878 13 C -0.115 4.115 14 C 0.109 3.891 15 N -0.599 5.599 16 C 0.526 3.474 17 O -0.576 6.576 18 C -0.143 4.143 19 H 0.151 0.849 20 C -0.121 4.121 21 C 0.107 3.893 22 N -0.714 5.714 23 C 0.528 3.472 24 O -0.549 6.549 25 C 0.116 3.884 26 H 0.065 0.935 27 C 0.189 3.811 28 H 0.244 0.756 29 H 0.039 0.961 30 H 0.031 0.969 31 H 0.120 0.880 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.424 0.576 40 H 0.041 0.959 41 H -0.018 1.018 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.575 -16.174 -6.283 20.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.263 4.263 3 Si 0.812 3.188 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.351 5.351 10 C 0.013 3.987 11 C -0.113 4.113 12 H 0.140 0.860 13 C -0.153 4.153 14 C -0.013 4.013 15 N -0.331 5.331 16 C 0.314 3.686 17 O -0.456 6.456 18 C -0.167 4.167 19 H 0.169 0.831 20 C -0.159 4.159 21 C -0.016 4.016 22 N -0.370 5.370 23 C 0.313 3.687 24 O -0.427 6.427 25 C 0.011 3.989 26 H 0.083 0.917 27 C 0.063 3.937 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.138 0.862 32 H 0.076 0.924 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.265 0.735 40 H 0.059 0.941 41 H 0.000 1.000 Dipole moment (debyes) X Y Z Total from point charges -11.360 -15.809 -5.793 20.311 hybrid contribution 0.220 1.170 0.279 1.223 sum -11.140 -14.640 -5.514 19.204 Atomic orbital electron populations 1.70261 1.06567 1.24960 1.58172 1.25789 0.96531 1.01498 1.02452 0.84998 0.77625 0.78647 0.77574 1.21029 1.22338 1.18854 1.19521 0.91202 0.83510 1.43079 0.89324 1.44489 1.02043 1.01569 1.87001 1.21246 0.94624 0.83905 0.98877 1.22878 0.92147 0.97357 0.98907 0.86006 1.22840 0.95157 1.02500 0.94798 1.22662 0.93574 0.91084 0.93944 1.48549 1.07300 1.37759 1.39483 1.20246 0.82355 0.82187 0.83799 1.90717 1.80122 1.32654 1.42057 1.22160 0.97021 0.95210 1.02341 0.83124 1.22685 0.89366 0.98730 1.05085 1.22353 0.93729 0.81502 1.04015 1.46097 1.05979 1.14971 1.69946 1.20328 0.83810 0.88573 0.76003 1.90696 1.46498 1.54442 1.51098 1.22651 0.86832 0.95475 0.93928 0.91741 1.21136 0.84088 0.92141 0.96378 0.94667 0.94331 0.95095 0.86176 0.92395 0.88441 0.90129 0.90708 0.86760 0.87506 0.87332 0.73474 0.94103 0.99982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.69 10.17 21.65 0.22 -61.47 16 2 C -0.07 -4.22 5.48 84.86 0.47 -3.75 16 3 Si 0.98 47.76 29.55 68.60 2.03 49.79 16 4 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 6 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.24 -14.34 10.25 84.03 0.86 -13.48 16 8 H 0.09 4.87 7.83 -2.91 -0.02 4.85 16 9 N -0.62 -34.15 3.37 -698.78 -2.36 -36.51 16 10 C 0.14 5.79 6.65 86.45 0.58 6.36 16 11 C -0.09 -3.25 3.91 -9.31 -0.04 -3.28 16 12 H 0.12 3.45 8.14 -2.38 -0.02 3.43 16 13 C -0.12 -3.32 6.23 31.87 0.20 -3.12 16 14 C 0.11 3.19 5.22 86.88 0.45 3.64 16 15 N -0.60 -22.87 2.82 -783.80 -2.21 -25.08 16 16 C 0.53 20.26 7.00 87.66 0.61 20.87 16 17 O -0.58 -27.53 15.60 -3.03 -0.05 -27.58 16 18 C -0.14 -3.63 2.61 -11.55 -0.03 -3.66 16 19 H 0.15 3.14 7.76 -2.39 -0.02 3.12 16 20 C -0.12 -2.32 6.48 31.65 0.21 -2.11 16 21 C 0.11 1.09 7.78 86.83 0.68 1.77 16 22 N -0.71 -10.66 6.24 -459.80 -2.87 -13.53 16 23 C 0.53 12.62 7.76 87.90 0.68 13.30 16 24 O -0.55 -16.26 14.23 -3.03 -0.04 -16.30 16 25 C 0.12 5.08 3.88 46.02 0.18 5.25 16 26 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 27 C 0.19 10.47 4.79 86.75 0.42 10.89 16 28 H 0.24 15.45 8.31 -92.71 -0.77 14.68 16 29 H 0.04 1.53 7.74 -2.39 -0.02 1.51 16 30 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.12 2.48 8.14 -2.39 -0.02 2.47 16 32 H 0.06 1.94 7.88 -2.39 -0.02 1.92 16 33 H 0.10 2.80 6.12 -2.39 -0.01 2.79 16 34 H 0.08 2.06 7.43 -2.39 -0.02 2.04 16 35 H 0.07 1.90 7.00 -2.39 -0.02 1.89 16 36 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.42 4.53 8.96 -92.71 -0.83 3.70 16 40 H 0.04 2.69 6.22 -2.39 -0.01 2.68 16 41 H -0.02 -1.09 7.95 -2.39 -0.02 -1.11 16 Total: -1.00 -84.93 321.54 0.20 -84.73 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.22 Total: 13.27 kcal Atomic # 6 Polarization: 27.43 SS G_CDS: 5.26 Total: 32.68 kcal Atomic # 7 Polarization: -129.37 SS G_CDS: -7.22 Total: -136.59 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -0.09 Total: -43.88 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.79 kcal Total: -84.93 0.20 -84.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076124928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.694 kcal (2) G-P(sol) polarization free energy of solvation -84.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds