Wall clock time and date at job start Tue Mar 31 2020 03:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47169 * 2 1 4 4 O 1.33491 * 126.83348 * 270.02898 * 3 2 1 5 5 N 1.20657 * 113.15656 * 179.97438 * 4 3 2 6 6 C 1.30010 * 112.30328 * 359.97438 * 5 4 3 7 7 C 1.37365 * 126.82262 * 90.00515 * 3 2 1 8 8 C 1.47393 * 128.56843 * 359.75689 * 7 3 2 9 9 O 1.21608 * 119.99676 * 0.02562 * 8 7 3 10 10 N 1.34774 * 120.00157 * 180.02562 * 8 7 3 11 11 C 1.46495 * 120.00172 * 180.02562 * 10 8 7 12 12 H 1.08997 * 110.89033 * 31.11353 * 11 10 8 13 13 C 1.54914 * 111.00378 * 267.19302 * 11 10 8 14 14 N 1.47419 * 104.83262 * 204.91582 * 13 11 10 15 15 C 1.36942 * 125.64838 * 204.14435 * 14 13 11 16 16 H 1.07997 * 120.00130 * 179.97438 * 15 14 13 17 17 C 1.38817 * 119.99808 * 359.97438 * 15 14 13 18 18 N 1.31614 * 119.99762 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99933 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46770 * 89.99840 * 19 17 15 21 21 H 1.48495 * 109.47320 * 209.99515 * 19 17 15 22 22 H 1.48504 * 109.47222 * 330.00141 * 19 17 15 23 23 C 1.47018 * 108.70741 * 24.12867 * 14 13 11 24 24 C 1.54332 * 107.26903 * 358.93924 * 23 14 13 25 25 H 1.09002 * 110.86714 * 96.24157 * 24 23 14 26 26 C 1.53000 * 110.71814 * 219.44515 * 24 23 14 27 27 H 1.09002 * 109.47374 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47157 * 299.99330 * 1 2 3 29 29 H 1.09003 * 109.47553 * 59.99199 * 1 2 3 30 30 H 1.09001 * 109.47157 * 240.00670 * 2 1 3 31 31 H 1.08996 * 109.47846 * 120.00612 * 2 1 3 32 32 H 1.08000 * 127.33401 * 180.02562 * 6 5 4 33 33 H 0.96999 * 119.99828 * 359.97438 * 10 8 7 34 34 H 1.09001 * 110.36483 * 323.75336 * 13 11 10 35 35 H 1.09005 * 110.36962 * 86.07591 * 13 11 10 36 36 H 0.97008 * 119.99464 * 180.02562 * 18 17 15 37 37 H 1.09004 * 109.88232 * 239.52566 * 23 14 13 38 38 H 1.08996 * 109.88672 * 118.35328 * 23 14 13 39 39 H 1.09004 * 109.46354 * 173.52365 * 26 24 23 40 40 H 1.08996 * 109.47359 * 293.51965 * 26 24 23 41 41 H 1.09003 * 109.47286 * 53.52369 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2985 2.1755 -1.0684 5 7 2.6890 3.2809 -0.7831 6 6 2.7537 3.4649 0.5022 7 6 2.3068 2.1970 1.0996 8 6 2.1784 1.8481 2.5259 9 8 1.7835 0.7441 2.8486 10 7 2.4986 2.7525 3.4724 11 6 2.3715 2.4056 4.8899 12 1 2.5506 1.3420 5.0473 13 6 0.9857 2.8237 5.4419 14 7 1.1942 3.0006 6.8905 15 6 0.2246 2.9100 7.8533 16 1 0.4800 3.0563 8.8924 17 6 -1.0867 2.6301 7.4936 18 7 -1.3980 2.4523 6.2272 19 14 -2.4092 2.5058 8.8069 20 1 -3.0166 3.8431 9.0257 21 1 -3.4580 1.5522 8.3646 22 1 -1.8043 2.0235 10.0745 23 6 2.6155 3.2899 7.1305 24 6 3.3258 3.2650 5.7606 25 1 3.4183 4.2716 5.3529 26 6 4.6994 2.6010 5.8752 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8898 32 1 3.0688 4.3582 1.0210 33 1 2.8139 3.6330 3.2149 34 1 0.6636 3.7608 4.9878 35 1 0.2514 2.0396 5.2572 36 1 -2.3143 2.2571 5.9758 37 1 3.0434 2.5295 7.7839 38 1 2.7217 4.2748 7.5852 39 1 5.1334 2.4903 4.8814 40 1 5.3524 3.2206 6.4898 41 1 4.5911 1.6190 6.3358 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080539597.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:57 Heat of formation + Delta-G solvation = 43.691158 kcal Electronic energy + Delta-G solvation = -23957.146977 eV Core-core repulsion = 20455.033786 eV Total energy + Delta-G solvation = -3502.113192 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.96363 -39.48679 -37.55884 -34.75157 -34.06411 -33.57573 -32.58443 -30.39802 -30.34450 -27.93838 -25.71806 -24.93897 -24.04305 -23.45315 -21.67052 -20.47218 -20.08892 -19.53657 -17.88646 -17.69309 -16.94402 -16.38023 -15.87091 -14.99396 -14.80953 -14.52788 -14.34474 -13.88737 -13.69060 -13.56799 -12.99778 -12.91344 -12.66217 -12.51651 -12.28048 -11.92259 -11.73552 -11.58650 -11.25433 -11.10979 -10.97372 -10.80719 -10.68644 -10.47466 -10.38079 -9.99569 -9.85592 -9.79925 -9.67915 -9.47350 -8.66086 -8.49553 -6.85097 -5.64381 -3.07933 1.07901 1.73795 2.73958 3.38110 3.41143 3.45400 3.47260 3.48167 4.16710 4.24810 4.49187 4.59768 4.92176 5.06849 5.12412 5.18184 5.28386 5.32555 5.42146 5.52701 5.57631 5.72685 5.73183 5.79020 5.93880 5.99015 6.02638 6.13046 6.20316 6.21684 6.35577 6.44880 6.64486 6.74198 6.91695 7.42468 7.61167 7.77678 7.89157 8.08543 8.35763 8.47979 9.20687 9.81983 10.44913 11.38599 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016520 B = 0.004456 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.474556 B = 6282.770810 C = 7365.824814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.048 3.952 4 O 0.088 5.912 5 N -0.359 5.359 6 C 0.021 3.979 7 C -0.255 4.255 8 C 0.594 3.406 9 O -0.527 6.527 10 N -0.703 5.703 11 C 0.120 3.880 12 H 0.095 0.905 13 C 0.149 3.851 14 N -0.603 5.603 15 C -0.227 4.227 16 H 0.079 0.921 17 C -0.009 4.009 18 N -0.918 5.918 19 Si 0.915 3.085 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.141 3.859 24 C -0.112 4.112 25 H 0.073 0.927 26 C -0.137 4.137 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.199 0.801 33 H 0.394 0.606 34 H 0.013 0.987 35 H 0.112 0.888 36 H 0.253 0.747 37 H 0.028 0.972 38 H 0.024 0.976 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.987 -0.984 -11.946 15.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.016 4.016 4 O 0.029 5.971 5 N -0.065 5.065 6 C -0.161 4.161 7 C -0.262 4.262 8 C 0.380 3.620 9 O -0.404 6.404 10 N -0.352 5.352 11 C 0.015 3.985 12 H 0.113 0.887 13 C 0.023 3.977 14 N -0.329 5.329 15 C -0.355 4.355 16 H 0.097 0.903 17 C -0.205 4.205 18 N -0.566 5.566 19 Si 0.745 3.255 20 H -0.217 1.217 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.015 3.985 24 C -0.131 4.131 25 H 0.092 0.908 26 C -0.195 4.195 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.133 0.867 32 H 0.216 0.784 33 H 0.227 0.773 34 H 0.031 0.969 35 H 0.130 0.870 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.041 0.959 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.731 -1.085 -12.740 16.068 hybrid contribution -0.570 0.559 1.315 1.538 sum 9.161 -0.526 -11.425 14.654 Atomic orbital electron populations 1.21723 0.92712 1.03120 1.02884 1.20388 0.97399 0.85373 1.05386 1.24925 0.95372 0.96228 0.85079 1.84549 1.61493 1.17583 1.33480 1.73627 1.16629 0.98629 1.17571 1.26373 1.00894 0.99269 0.89598 1.22244 1.13195 0.95036 0.95766 1.16718 0.77748 0.84759 0.82774 1.90810 1.45986 1.21661 1.81953 1.45649 1.66931 1.16031 1.06607 1.22763 0.98941 0.99739 0.77047 0.88661 1.22235 0.92040 1.00659 0.82787 1.44385 1.02437 1.83115 1.02988 1.19069 0.87146 1.41423 0.87862 0.90317 1.24812 0.97266 1.01970 0.96444 1.69797 1.17875 1.54771 1.14185 0.86074 0.81555 0.77415 0.80451 1.21651 1.21609 1.20632 1.21342 0.86132 0.97769 0.93256 1.22441 0.94507 0.98753 0.97439 0.90840 1.21745 0.95987 1.00743 1.01027 0.90967 0.91244 0.92535 0.89472 0.86669 0.78379 0.77265 0.96901 0.86996 0.93665 0.95399 0.95855 0.93133 0.92851 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.89 37.15 0.37 -1.21 16 2 C -0.05 -0.50 6.05 -27.89 -0.17 -0.67 16 3 C 0.05 0.60 6.80 -34.63 -0.24 0.37 16 4 O 0.09 1.11 11.06 18.66 0.21 1.32 16 5 N -0.36 -4.66 12.01 31.81 0.38 -4.27 16 6 C 0.02 0.25 11.95 -14.73 -0.18 0.08 16 7 C -0.25 -3.50 6.47 -102.89 -0.67 -4.17 16 8 C 0.59 9.80 7.81 -12.54 -0.10 9.70 16 9 O -0.53 -10.38 14.88 5.27 0.08 -10.30 16 10 N -0.70 -10.90 5.19 -52.81 -0.27 -11.17 16 11 C 0.12 2.25 2.87 -65.78 -0.19 2.06 16 12 H 0.10 1.97 7.44 -51.93 -0.39 1.58 16 13 C 0.15 3.61 5.58 -2.53 -0.01 3.60 16 14 N -0.60 -15.34 3.39 -170.07 -0.58 -15.92 16 15 C -0.23 -6.32 10.27 -15.06 -0.15 -6.47 16 16 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 17 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 18 N -0.92 -27.12 10.09 55.49 0.56 -26.56 16 19 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.14 2.86 6.84 -3.06 -0.02 2.84 16 24 C -0.11 -1.82 3.20 -88.78 -0.28 -2.10 16 25 H 0.07 1.08 8.00 -51.93 -0.42 0.67 16 26 C -0.14 -1.83 9.16 37.16 0.34 -1.49 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.12 1.38 6.79 -51.93 -0.35 1.03 16 32 H 0.20 1.64 7.88 -52.49 -0.41 1.22 16 33 H 0.39 4.85 7.93 -40.82 -0.32 4.52 16 34 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.11 3.20 5.87 -51.93 -0.31 2.89 16 36 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.03 0.56 7.77 -51.93 -0.40 0.16 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.81 8.06 -51.93 -0.42 0.39 16 LS Contribution 340.91 15.07 5.14 5.14 Total: -1.00 -32.53 340.91 -6.85 -39.38 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -5.95 Total: 3.07 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -1.39 Total: 2.18 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.09 Total: -57.92 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.28 Total: -8.98 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.53 -6.85 -39.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080539597.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.069 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds