Wall clock time and date at job start Tue Mar 31 2020 03:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47090 * 2 1 4 4 C 1.35313 * 126.66981 * 90.31618 * 3 2 1 5 5 C 1.42267 * 103.92379 * 180.08324 * 4 3 2 6 6 C 1.48335 * 126.94207 * 179.89375 * 5 4 3 7 7 O 1.21494 * 119.99432 * 359.70754 * 6 5 4 8 8 N 1.34769 * 120.00510 * 179.71086 * 6 5 4 9 9 C 1.46494 * 120.00103 * 179.97438 * 8 6 5 10 10 H 1.08999 * 110.64561 * 31.86256 * 9 8 6 11 11 C 1.54322 * 110.87461 * 268.60816 * 9 8 6 12 12 N 1.47020 * 107.27467 * 219.37420 * 11 9 8 13 13 C 1.36939 * 125.65087 * 179.20508 * 12 11 9 14 14 H 1.07997 * 119.99591 * 174.35340 * 13 12 11 15 15 C 1.38813 * 119.99732 * 354.35924 * 13 12 11 16 16 N 1.31615 * 120.00275 * 7.02877 * 15 13 12 17 17 Si 1.86799 * 119.99623 * 187.02776 * 15 13 12 18 18 H 1.48500 * 109.47076 * 94.98809 * 17 15 13 19 19 H 1.48498 * 109.46809 * 214.98525 * 17 15 13 20 20 H 1.48499 * 109.47087 * 334.98434 * 17 15 13 21 21 C 1.47429 * 108.70230 * 358.93934 * 12 11 9 22 22 C 1.54909 * 104.83054 * 24.13111 * 21 12 11 23 23 H 1.09002 * 111.00534 * 81.10134 * 22 21 12 24 24 C 1.52998 * 111.00546 * 204.91538 * 22 21 12 25 25 N 1.30981 * 106.12492 * 359.62615 * 5 4 3 26 26 O 1.20911 * 111.43677 * 0.24124 * 25 5 4 27 27 H 1.09000 * 109.46888 * 300.00029 * 1 2 3 28 28 H 1.08996 * 109.47128 * 59.99948 * 1 2 3 29 29 H 1.08999 * 109.46839 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47149 * 239.99734 * 2 1 3 31 31 H 1.09004 * 109.47094 * 119.99746 * 2 1 3 32 32 H 1.08001 * 128.03586 * 359.96294 * 4 3 2 33 33 H 0.97004 * 119.99815 * 359.97438 * 8 6 5 34 34 H 1.09000 * 109.88266 * 99.95594 * 11 9 8 35 35 H 1.09003 * 109.88108 * 338.78942 * 11 9 8 36 36 H 0.96992 * 120.00186 * 180.02562 * 16 15 13 37 37 H 1.09002 * 110.36346 * 142.96798 * 21 12 11 38 38 H 1.08999 * 110.37028 * 265.18056 * 21 12 11 39 39 H 1.09005 * 109.47223 * 58.54267 * 24 22 21 40 40 H 1.09001 * 109.47542 * 178.54634 * 24 22 21 41 41 H 1.09007 * 109.47177 * 298.54820 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3074 2.1807 1.0853 5 6 2.7399 3.4194 0.5353 6 6 3.1678 4.6263 1.2839 7 8 3.1659 4.6199 2.4988 8 7 3.5586 5.7300 0.6166 9 6 3.9806 6.9222 1.3560 10 1 4.4529 6.6430 2.2979 11 6 2.7861 7.8674 1.6033 12 7 3.2735 9.2429 1.4246 13 6 2.5179 10.3789 1.5413 14 1 2.9886 11.3491 1.4808 15 6 1.1470 10.2835 1.7375 16 7 0.5927 9.1087 1.9495 17 14 0.0889 11.8225 1.7006 18 1 -0.4758 12.0024 0.3390 19 1 -1.0177 11.6859 2.6813 20 1 0.9191 13.0025 2.0522 21 6 4.7121 9.1969 1.1052 22 6 4.9386 7.7900 0.4977 23 1 4.6511 7.7674 -0.5534 24 6 6.3910 7.3432 0.6757 25 7 2.6897 3.2770 -0.7658 26 8 2.2995 2.1751 -1.0750 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.2173 1.9104 2.1271 33 1 3.5605 5.7350 -0.3535 34 1 2.4129 7.7354 2.6188 35 1 1.9934 7.6588 0.8847 36 1 -0.3652 9.0420 2.0862 37 1 4.9641 9.9691 0.3783 38 1 5.3059 9.3211 2.0108 39 1 6.6407 7.3331 1.7367 40 1 6.5163 6.3420 0.2634 41 1 7.0510 8.0363 0.1537 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080809173.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:02 Heat of formation + Delta-G solvation = 43.982394 kcal Electronic energy + Delta-G solvation = -23488.230435 eV Core-core repulsion = 19986.129872 eV Total energy + Delta-G solvation = -3502.100563 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.12929 -39.52709 -37.53130 -35.16520 -34.08203 -33.72575 -32.57352 -30.38647 -30.32800 -27.99776 -25.69424 -24.92870 -24.30780 -23.32750 -22.38822 -20.45530 -20.03192 -19.36335 -17.88369 -17.55923 -16.87280 -16.67672 -15.86489 -15.02964 -14.84464 -14.64723 -14.35982 -14.02534 -13.70858 -13.60708 -13.16765 -12.95257 -12.79269 -12.70973 -12.14503 -12.00574 -11.76201 -11.70796 -11.35875 -11.28593 -11.01159 -10.78445 -10.70362 -10.47783 -10.37722 -10.04254 -9.95818 -9.88068 -9.68164 -9.57295 -8.63328 -8.51970 -6.82920 -5.69883 -3.04066 1.11752 1.63728 2.81391 3.18695 3.39984 3.41764 3.46463 3.49119 4.00265 4.35485 4.51687 4.68244 4.81789 4.91916 5.00179 5.06926 5.25488 5.30283 5.40229 5.44497 5.46293 5.55785 5.62558 5.74895 5.78241 5.85852 5.98154 5.98705 6.14943 6.17189 6.33256 6.47424 6.62949 6.68669 6.92055 7.48663 7.59719 7.75067 7.84053 8.00495 8.25434 8.38487 9.21602 9.82787 10.48015 11.41443 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017011 B = 0.003882 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.580570 B = 7210.677391 C = 8357.277245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.040 4.040 3 C -0.038 4.038 4 C -0.180 4.180 5 C -0.016 4.016 6 C 0.595 3.405 7 O -0.522 6.522 8 N -0.694 5.694 9 C 0.119 3.881 10 H 0.092 0.908 11 C 0.172 3.828 12 N -0.605 5.605 13 C -0.231 4.231 14 H 0.080 0.920 15 C -0.006 4.006 16 N -0.918 5.918 17 Si 0.911 3.089 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.280 1.280 21 C 0.141 3.859 22 C -0.114 4.114 23 H 0.078 0.922 24 C -0.137 4.137 25 N -0.333 5.333 26 O 0.119 5.881 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.180 0.820 33 H 0.402 0.598 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.252 0.748 37 H 0.044 0.956 38 H 0.023 0.977 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.171 -18.410 -5.676 19.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.078 4.078 3 C -0.101 4.101 4 C -0.202 4.202 5 C -0.175 4.175 6 C 0.378 3.622 7 O -0.396 6.396 8 N -0.344 5.344 9 C 0.014 3.986 10 H 0.110 0.890 11 C 0.046 3.954 12 N -0.332 5.332 13 C -0.360 4.360 14 H 0.098 0.902 15 C -0.203 4.203 16 N -0.565 5.565 17 Si 0.741 3.259 18 H -0.216 1.216 19 H -0.218 1.218 20 H -0.206 1.206 21 C 0.015 3.985 22 C -0.134 4.134 23 H 0.097 0.903 24 C -0.195 4.195 25 N -0.034 5.034 26 O 0.044 5.956 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.197 0.803 33 H 0.237 0.763 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.255 -17.452 -5.722 19.103 hybrid contribution -0.843 0.507 0.273 1.021 sum 4.412 -16.945 -5.449 18.338 Atomic orbital electron populations 1.21822 0.93359 1.02746 1.03197 1.20127 0.96757 0.86101 1.04823 1.24495 1.02775 0.97219 0.85586 1.22438 1.04678 0.91632 1.01494 1.23653 1.05829 0.98050 0.90008 1.16835 0.77844 0.81068 0.86448 1.90802 1.53646 1.82735 1.12414 1.45798 1.65533 1.12634 1.10386 1.22622 0.97395 0.83779 0.94787 0.88972 1.21489 0.91006 0.81826 1.01071 1.44407 1.03617 1.02399 1.82805 1.19059 0.88813 0.84742 1.43344 0.90227 1.24852 0.96671 0.96954 1.01834 1.69982 1.10421 1.21720 1.54336 0.86112 0.80297 0.82109 0.77348 1.21637 1.21758 1.20578 1.21590 0.87305 0.93129 0.96507 1.22629 0.94148 0.96975 0.99619 0.90340 1.21701 0.95620 1.00412 1.01771 1.74172 1.14345 0.99166 1.15766 1.84763 1.60055 1.17293 1.33459 0.91833 0.91921 0.91215 0.89218 0.88335 0.80289 0.76308 0.93485 0.92906 0.93714 0.93807 0.95962 0.92552 0.93185 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.89 37.16 0.37 -0.52 16 2 C -0.04 -0.23 6.50 -27.88 -0.18 -0.41 16 3 C -0.04 -0.38 6.73 -35.35 -0.24 -0.62 16 4 C -0.18 -2.26 10.92 -39.08 -0.43 -2.69 16 5 C -0.02 -0.25 7.19 -82.53 -0.59 -0.84 16 6 C 0.60 11.10 7.85 -12.11 -0.10 11.01 16 7 O -0.52 -11.25 16.60 5.37 0.09 -11.16 16 8 N -0.69 -12.49 5.11 -52.82 -0.27 -12.76 16 9 C 0.12 2.37 2.78 -66.10 -0.18 2.18 16 10 H 0.09 1.91 7.42 -51.93 -0.39 1.52 16 11 C 0.17 4.38 5.14 -3.07 -0.02 4.37 16 12 N -0.61 -15.82 3.39 -170.07 -0.58 -16.40 16 13 C -0.23 -6.58 10.26 -15.06 -0.15 -6.73 16 14 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 15 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 16 N -0.92 -27.92 10.36 55.49 0.57 -27.35 16 17 Si 0.91 22.53 29.56 -169.99 -5.02 17.51 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 C 0.14 2.93 6.70 -2.53 -0.02 2.91 16 22 C -0.11 -1.98 3.27 -88.47 -0.29 -2.27 16 23 H 0.08 1.33 8.01 -51.93 -0.42 0.92 16 24 C -0.14 -1.91 9.30 37.16 0.35 -1.57 16 25 N -0.33 -4.92 11.84 33.29 0.39 -4.52 16 26 O 0.12 1.47 11.18 17.25 0.19 1.66 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.18 1.97 8.06 -52.49 -0.42 1.54 16 33 H 0.40 6.54 8.32 -40.82 -0.34 6.20 16 34 H 0.05 1.38 7.62 -51.93 -0.40 0.98 16 35 H 0.05 1.49 7.18 -51.93 -0.37 1.12 16 36 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.02 0.46 8.04 -51.93 -0.42 0.04 16 39 H 0.06 0.79 8.11 -51.93 -0.42 0.36 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 LS Contribution 345.41 15.07 5.21 5.21 Total: -1.00 -33.78 345.41 -7.09 -40.87 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.10 Total: 2.40 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -1.58 Total: 4.53 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: 0.12 Total: -61.02 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.28 Total: -9.49 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.78 -7.09 -40.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080809173.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.853 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds