Wall clock time and date at job start Tue Mar 31 2020 03:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35455 * 125.56162 * 2 1 4 4 C 1.39834 * 107.86588 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.46200 * 179.97438 * 4 3 2 6 6 C 1.37876 * 107.08506 * 359.97438 * 4 3 2 7 7 C 1.46673 * 126.23633 * 179.97438 * 6 4 3 8 8 O 1.21693 * 119.99819 * 0.02562 * 7 6 4 9 9 N 1.34771 * 120.00154 * 180.02562 * 7 6 4 10 10 C 1.46503 * 120.00213 * 179.97438 * 9 7 6 11 11 H 1.09003 * 110.88640 * 34.29845 * 10 9 7 12 12 C 1.54913 * 111.00559 * 270.42047 * 10 9 7 13 13 N 1.47468 * 104.80788 * 204.94751 * 12 10 9 14 14 C 1.36933 * 125.62417 * 204.13596 * 13 12 10 15 15 H 1.08001 * 120.00508 * 359.94744 * 14 13 12 16 16 C 1.38818 * 119.99883 * 179.97438 * 14 13 12 17 17 N 1.31619 * 119.99785 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99989 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47407 * 89.99763 * 18 16 14 20 20 H 1.48497 * 109.47183 * 209.99799 * 18 16 14 21 21 H 1.48502 * 109.47179 * 329.99637 * 18 16 14 22 22 C 1.47023 * 108.72591 * 24.07002 * 13 12 10 23 23 C 1.54324 * 107.26906 * 358.97681 * 22 13 12 24 24 H 1.09004 * 110.71668 * 219.44807 * 23 22 13 25 25 O 1.42896 * 110.87757 * 96.24296 * 23 22 13 26 26 N 1.35530 * 125.56385 * 179.97438 * 2 1 3 27 27 H 0.96994 * 125.67936 * 0.02562 * 26 2 1 28 28 H 1.09001 * 109.46330 * 90.02897 * 1 2 3 29 29 H 1.08994 * 109.47024 * 210.02607 * 1 2 3 30 30 H 1.08996 * 109.46948 * 330.03129 * 1 2 3 31 31 H 1.07998 * 126.06918 * 359.70633 * 3 2 1 32 32 H 1.09002 * 109.47316 * 90.02111 * 5 4 3 33 33 H 1.08998 * 109.47379 * 210.02089 * 5 4 3 34 34 H 1.08997 * 109.47130 * 330.02543 * 5 4 3 35 35 H 0.97001 * 120.00497 * 0.02562 * 9 7 6 36 36 H 1.09002 * 110.36332 * 323.74958 * 12 10 9 37 37 H 1.08996 * 110.36357 * 86.07677 * 12 10 9 38 38 H 0.97001 * 119.99446 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.88099 * 239.55802 * 22 13 12 40 40 H 1.09001 * 110.00821 * 118.45958 * 22 13 12 41 41 H 0.96696 * 113.99702 * 66.38107 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6270 0.6769 0.0006 5 6 4.8486 1.5593 0.0003 6 6 3.6123 -0.7018 0.0015 7 6 4.7861 -1.5814 0.0019 8 8 5.9050 -1.1029 0.0018 9 7 4.6254 -2.9195 0.0023 10 6 5.7978 -3.7981 0.0021 11 1 6.6135 -3.3577 0.5755 12 6 6.2479 -4.1230 -1.4442 13 7 6.9607 -5.4095 -1.3370 14 6 7.9123 -5.8691 -2.2078 15 1 8.1967 -5.2718 -3.0615 16 6 8.5112 -7.1029 -1.9935 17 7 8.1647 -7.8308 -0.9531 18 14 9.8099 -7.7296 -3.1810 19 1 11.1513 -7.2788 -2.7307 20 1 9.7728 -9.2136 -3.2171 21 1 9.5381 -7.1945 -4.5394 22 6 6.4818 -6.1161 -0.1400 23 6 5.4366 -5.2075 0.5410 24 1 5.5417 -5.2443 1.6253 25 8 4.1118 -5.5739 0.1506 26 7 2.2953 -1.1025 0.0005 27 1 1.9834 -2.0209 0.0006 28 1 -0.3632 -0.0005 -1.0277 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5133 31 1 1.9545 2.1269 -0.0045 32 1 5.1432 1.7725 1.0279 33 1 5.6643 1.0504 -0.5133 34 1 4.6220 2.4933 -0.5138 35 1 3.7336 -3.3010 0.0020 36 1 5.3813 -4.2230 -2.0977 37 1 6.9174 -3.3474 -1.8163 38 1 8.5835 -8.6929 -0.8033 39 1 7.3136 -6.2988 0.5403 40 1 6.0211 -7.0621 -0.4246 41 1 3.8372 -6.4471 0.4624 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083574703.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:40 Heat of formation + Delta-G solvation = -44.681075 kcal Electronic energy + Delta-G solvation = -23663.028628 eV Core-core repulsion = 20157.083328 eV Total energy + Delta-G solvation = -3505.945299 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.40263 -40.69397 -39.25168 -36.51054 -35.60148 -33.81195 -33.56291 -32.36025 -30.36132 -29.04196 -28.55993 -27.29358 -26.15912 -22.95496 -22.23336 -21.71684 -21.24372 -20.28547 -19.49745 -18.93262 -18.32786 -16.96845 -16.68878 -16.41816 -16.36286 -15.80541 -15.36716 -15.21500 -14.84252 -14.58729 -14.39130 -14.28293 -14.03865 -13.86093 -13.82517 -13.54089 -13.22066 -13.05924 -12.89052 -12.84806 -12.76562 -12.38833 -12.33006 -12.15156 -11.97995 -11.89888 -11.06780 -10.91314 -10.79460 -10.22047 -9.69870 -9.00188 -8.94397 -7.91338 -5.27407 0.43270 1.44051 1.46138 1.54645 1.75374 1.96108 2.18038 2.32131 2.47182 3.12723 3.27680 3.57626 3.75427 3.89983 3.94672 3.98336 4.20469 4.22764 4.30795 4.44735 4.60778 4.66571 4.78487 4.83561 4.86141 4.89880 4.94870 4.97909 5.17106 5.22236 5.32177 5.39057 5.43993 5.50894 5.61803 5.83912 5.98669 6.11527 6.47272 6.61285 6.82185 7.03943 7.15106 7.67426 8.31144 9.18552 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026930 B = 0.003491 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.466059 B = 8017.753700 C = 8580.829652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.069 3.931 3 C -0.225 4.225 4 C -0.087 4.087 5 C -0.088 4.088 6 C -0.087 4.087 7 C 0.582 3.418 8 O -0.569 6.569 9 N -0.697 5.697 10 C 0.153 3.847 11 H 0.093 0.907 12 C 0.133 3.867 13 N -0.621 5.621 14 C -0.250 4.250 15 H 0.076 0.924 16 C -0.059 4.059 17 N -0.947 5.947 18 Si 0.981 3.019 19 H -0.285 1.285 20 H -0.288 1.288 21 H -0.272 1.272 22 C 0.160 3.840 23 C 0.094 3.906 24 H 0.093 0.907 25 O -0.565 6.565 26 N -0.529 5.529 27 H 0.426 0.574 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.163 0.837 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.412 0.588 36 H 0.022 0.978 37 H 0.028 0.972 38 H 0.250 0.750 39 H 0.026 0.974 40 H 0.028 0.972 41 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.744 13.632 5.596 23.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.050 4.050 3 C -0.248 4.248 4 C -0.096 4.096 5 C -0.145 4.145 6 C -0.199 4.199 7 C 0.372 3.628 8 O -0.449 6.449 9 N -0.349 5.349 10 C 0.046 3.954 11 H 0.111 0.889 12 C 0.006 3.994 13 N -0.348 5.348 14 C -0.379 4.379 15 H 0.094 0.906 16 C -0.252 4.252 17 N -0.595 5.595 18 Si 0.808 3.192 19 H -0.212 1.212 20 H -0.215 1.215 21 H -0.197 1.197 22 C 0.035 3.965 23 C 0.033 3.967 24 H 0.110 0.890 25 O -0.374 6.374 26 N -0.127 5.127 27 H 0.265 0.735 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.181 0.819 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.249 0.751 36 H 0.040 0.960 37 H 0.046 0.954 38 H 0.059 0.941 39 H 0.044 0.956 40 H 0.047 0.953 41 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -17.819 14.159 5.291 23.366 hybrid contribution 0.737 -1.902 -0.432 2.085 sum -17.082 12.257 4.859 21.579 Atomic orbital electron populations 1.20574 0.84543 1.05117 1.04264 1.21183 0.95326 0.85393 1.03081 1.20853 0.90728 0.99465 1.13796 1.20257 0.96779 0.91118 1.01471 1.20309 0.93989 0.98074 1.02165 1.19904 0.83328 0.94062 1.22614 1.17474 0.87885 0.81711 0.75742 1.90791 1.25898 1.75653 1.52537 1.45437 1.09989 1.04701 1.74735 1.21957 0.88418 0.88405 0.96577 0.88913 1.21861 0.94497 0.87584 0.95426 1.44558 1.44788 1.17411 1.28031 1.19420 1.13104 1.01254 1.04083 0.90628 1.25613 1.02263 0.97179 1.00172 1.70106 1.46156 1.13079 1.30202 0.85052 0.78649 0.77008 0.78441 1.21185 1.21451 1.19748 1.21716 0.93949 0.93255 0.87598 1.23125 0.83144 0.92511 0.97893 0.88976 1.86183 1.29294 1.41141 1.80768 1.41901 1.04360 1.09475 1.56938 0.73475 0.89375 0.90044 0.88151 0.81938 0.91420 0.92800 0.89987 0.75102 0.95977 0.95400 0.94058 0.95591 0.95345 0.74945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.66 10.41 71.24 0.74 0.08 16 2 C 0.07 1.13 7.13 41.35 0.29 1.42 16 3 C -0.22 -4.41 10.66 22.01 0.23 -4.18 16 4 C -0.09 -2.29 6.21 -19.56 -0.12 -2.41 16 5 C -0.09 -2.26 9.83 71.24 0.70 -1.56 16 6 C -0.09 -2.41 7.06 40.35 0.28 -2.12 16 7 C 0.58 19.70 7.79 86.45 0.67 20.37 16 8 O -0.57 -23.51 14.49 -4.32 -0.06 -23.57 16 9 N -0.70 -21.75 5.17 -439.91 -2.28 -24.03 16 10 C 0.15 5.79 3.25 46.38 0.15 5.94 16 11 H 0.09 3.80 7.63 -2.39 -0.02 3.78 16 12 C 0.13 6.12 6.93 86.85 0.60 6.72 16 13 N -0.62 -33.17 3.40 -691.87 -2.35 -35.52 16 14 C -0.25 -14.57 10.28 84.04 0.86 -13.71 16 15 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 16 C -0.06 -3.38 5.49 84.86 0.47 -2.92 16 17 N -0.95 -55.98 10.31 21.65 0.22 -55.75 16 18 Si 0.98 46.37 29.55 68.60 2.03 48.40 16 19 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 22 C 0.16 7.66 5.14 86.73 0.45 8.11 16 23 C 0.09 3.26 4.19 31.78 0.13 3.39 16 24 H 0.09 2.73 8.14 -2.38 -0.02 2.71 16 25 O -0.57 -16.33 12.14 -148.98 -1.81 -18.14 16 26 N -0.53 -10.20 5.99 -171.92 -1.03 -11.23 16 27 H 0.43 6.06 8.19 -92.71 -0.76 5.30 16 28 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.05 1.68 6.48 -2.39 -0.02 1.67 16 34 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.41 10.61 6.69 -92.71 -0.62 9.99 16 36 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 38 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 39 H 0.03 1.38 7.38 -2.39 -0.02 1.37 16 40 H 0.03 1.48 7.44 -2.39 -0.02 1.46 16 41 H 0.40 8.47 9.12 -74.06 -0.68 7.79 16 Total: -1.00 -75.70 339.00 -0.78 -76.48 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -0.98 Total: 24.19 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: 5.47 Total: 19.16 kcal Atomic # 7 Polarization: -121.10 SS G_CDS: -5.43 Total: -126.54 kcal Atomic # 8 Polarization: -39.83 SS G_CDS: -1.87 Total: -41.71 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -75.70 -0.78 -76.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083574703.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.804 kcal (2) G-P(sol) polarization free energy of solvation -75.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds