Wall clock time and date at job start Tue Mar 31 2020 03:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47608 * 2 1 4 4 O 1.33495 * 126.82931 * 270.17359 * 3 2 1 5 5 N 1.20655 * 113.15907 * 180.30835 * 4 3 2 6 6 C 1.30012 * 112.29693 * 359.71717 * 5 4 3 7 7 C 1.37357 * 126.83026 * 90.00126 * 3 2 1 8 8 C 1.47398 * 128.56236 * 359.97438 * 7 3 2 9 9 O 1.21607 * 120.00083 * 359.69645 * 8 7 3 10 10 N 1.34778 * 119.99658 * 179.70379 * 8 7 3 11 11 C 1.46494 * 119.99845 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47332 * 179.97438 * 11 10 8 13 13 H 1.09003 * 112.84891 * 316.19512 * 12 11 10 14 14 C 1.53776 * 113.69292 * 87.46486 * 12 11 10 15 15 C 1.53780 * 87.08340 * 139.99435 * 14 12 11 16 16 H 1.08996 * 113.69235 * 89.12922 * 15 14 12 17 17 N 1.46506 * 113.61356 * 220.01816 * 15 14 12 18 18 C 1.36939 * 120.00073 * 252.22120 * 17 15 14 19 19 H 1.08004 * 119.99859 * 0.02562 * 18 17 15 20 20 C 1.38805 * 119.99849 * 180.02562 * 18 17 15 21 21 N 1.31622 * 120.00455 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00168 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46615 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47374 * 119.99782 * 22 20 18 25 25 H 1.48495 * 109.47187 * 240.00172 * 22 20 18 26 26 C 1.53776 * 87.08054 * 334.56633 * 15 14 12 27 27 H 1.09000 * 109.47838 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46738 * 300.00147 * 1 2 3 29 29 H 1.08998 * 109.47211 * 59.99444 * 1 2 3 30 30 H 1.09003 * 109.46738 * 239.99853 * 2 1 3 31 31 H 1.08998 * 109.47211 * 120.00556 * 2 1 3 32 32 H 1.08006 * 127.33161 * 179.97438 * 6 5 4 33 33 H 0.96998 * 120.00450 * 359.97438 * 10 8 7 34 34 H 1.09000 * 109.47278 * 60.00091 * 11 10 8 35 35 H 1.09007 * 109.47570 * 299.99935 * 11 10 8 36 36 H 1.09009 * 113.61629 * 25.44504 * 14 12 11 37 37 H 1.09007 * 113.61606 * 254.54165 * 14 12 11 38 38 H 0.97005 * 119.99811 * 72.49914 * 17 15 14 39 39 H 0.97000 * 120.00679 * 179.97438 * 21 20 18 40 40 H 1.09008 * 113.61560 * 139.97766 * 26 15 14 41 41 H 1.08997 * 113.61573 * 270.80097 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2961 2.1763 -1.0685 5 7 2.6935 3.2793 -0.7834 6 6 2.7613 3.4622 0.5020 7 6 2.3069 2.1970 1.0994 8 6 2.1825 1.8467 2.5258 9 8 1.7859 0.7434 2.8486 10 7 2.5083 2.7493 3.4722 11 6 2.3841 2.4014 4.8898 12 6 2.8146 3.5933 5.7471 13 1 3.7251 4.0695 5.3832 14 6 1.6769 4.5846 6.0429 15 6 2.2503 4.6968 7.4654 16 1 3.0064 5.4745 7.5727 17 7 1.2238 4.7536 8.5091 18 6 0.9824 5.9290 9.1689 19 1 1.5485 6.8143 8.9196 20 6 0.0102 5.9826 10.1582 21 7 -0.6801 4.9038 10.4618 22 14 -0.3197 7.5861 11.0578 23 1 0.5830 8.6424 10.5336 24 1 -1.7324 7.9914 10.8454 25 1 -0.0713 7.3992 12.5098 26 6 2.8377 3.2914 7.2548 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.0831 4.3532 1.0207 33 1 2.8249 3.6293 3.2147 34 1 3.0222 1.5459 5.1112 35 1 1.3474 2.1488 5.1126 36 1 0.6848 4.1344 6.0063 37 1 1.7442 5.5100 5.4708 38 1 0.7179 3.9575 8.7356 39 1 -1.3592 4.9411 11.1534 40 1 3.8422 3.1725 7.6610 41 1 2.1636 2.4876 7.5508 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086214082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:21 Heat of formation + Delta-G solvation = 44.393064 kcal Electronic energy + Delta-G solvation = -22617.643586 eV Core-core repulsion = 19115.560832 eV Total energy + Delta-G solvation = -3502.082755 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.23176 -39.82935 -38.48455 -35.20891 -34.65470 -33.95771 -33.25637 -30.75482 -30.22972 -27.72808 -25.15296 -24.97414 -24.32810 -23.77886 -21.91546 -21.07331 -20.52269 -19.15464 -18.18479 -17.97672 -17.07783 -16.74389 -16.12178 -15.43276 -15.18917 -14.87985 -14.70047 -14.58178 -13.90282 -13.83448 -13.51771 -13.37019 -12.98417 -12.91140 -12.21791 -11.94680 -11.87119 -11.86261 -11.45374 -11.27905 -11.24925 -10.87901 -10.73884 -10.57934 -10.37366 -10.15675 -10.03587 -9.86887 -9.79196 -9.53768 -9.11357 -8.90155 -6.99148 -5.80937 -3.09960 0.76974 1.47636 2.45666 3.00705 3.04741 3.40610 3.46222 3.48564 3.90297 3.96712 4.28749 4.55861 4.62751 4.81888 4.84397 4.91078 4.94308 5.04605 5.18691 5.31512 5.43318 5.45167 5.46577 5.51087 5.69865 5.76638 5.79911 5.87543 5.89286 6.05752 6.17609 6.26510 6.31344 6.37903 6.55212 6.78211 7.07207 7.30866 7.66985 7.83061 8.00347 8.37580 9.48769 10.06773 10.40836 11.41465 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027257 B = 0.002520 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.999135 B =11108.963105 C =11287.287506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.049 4.049 3 C 0.052 3.948 4 O 0.091 5.909 5 N -0.355 5.355 6 C 0.023 3.977 7 C -0.263 4.263 8 C 0.595 3.405 9 O -0.534 6.534 10 N -0.715 5.715 11 C 0.133 3.867 12 C -0.128 4.128 13 H 0.088 0.912 14 C -0.161 4.161 15 C 0.166 3.834 16 H 0.075 0.925 17 N -0.713 5.713 18 C -0.244 4.244 19 H 0.072 0.928 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.142 4.142 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.201 0.799 33 H 0.400 0.600 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.385 0.615 39 H 0.255 0.745 40 H 0.062 0.938 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.694 -8.120 -21.816 24.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 C -0.012 4.012 4 O 0.032 5.968 5 N -0.060 5.060 6 C -0.160 4.160 7 C -0.270 4.270 8 C 0.381 3.619 9 O -0.412 6.412 10 N -0.365 5.365 11 C 0.010 3.990 12 C -0.147 4.147 13 H 0.107 0.893 14 C -0.202 4.202 15 C 0.054 3.946 16 H 0.093 0.907 17 N -0.351 5.351 18 C -0.375 4.375 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.182 4.182 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.133 0.867 32 H 0.218 0.782 33 H 0.234 0.766 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.645 -7.972 -22.522 25.085 hybrid contribution -0.277 1.014 1.233 1.620 sum 7.369 -6.959 -21.289 23.579 Atomic orbital electron populations 1.21718 0.92721 1.03188 1.02738 1.20410 0.97356 0.85382 1.05595 1.24954 0.95005 0.96122 0.85131 1.84580 1.61158 1.17708 1.33401 1.73664 1.16172 0.98640 1.17550 1.26408 1.00751 0.99255 0.89600 1.22144 1.14017 0.95334 0.95512 1.16782 0.77597 0.84524 0.83023 1.90796 1.46657 1.21582 1.82208 1.45835 1.67125 1.16726 1.06802 1.21499 1.02055 0.97705 0.77696 1.22650 0.99968 0.96305 0.95810 0.89335 1.23961 0.97479 0.97504 1.01294 1.21516 0.91445 0.94017 0.87669 0.90657 1.42428 1.40981 1.11095 1.40576 1.19343 1.15629 0.89200 1.13341 0.91051 1.24773 0.99119 0.97317 0.99730 1.69668 1.26591 1.27186 1.34529 0.86123 0.77674 0.82895 0.79526 1.20535 1.21836 1.21827 1.23454 1.01214 1.00689 0.92834 0.90843 0.91645 0.92334 0.89186 0.86707 0.78202 0.76571 0.91440 0.90890 0.90296 0.92766 0.78052 0.93471 0.91957 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 37.15 0.37 -0.69 16 2 C -0.05 -0.37 6.05 -27.89 -0.17 -0.54 16 3 C 0.05 0.50 6.80 -34.63 -0.24 0.26 16 4 O 0.09 0.92 11.06 18.65 0.21 1.13 16 5 N -0.35 -3.78 12.01 31.80 0.38 -3.39 16 6 C 0.02 0.21 11.95 -14.73 -0.18 0.03 16 7 C -0.26 -2.72 6.47 -102.89 -0.67 -3.38 16 8 C 0.59 7.15 7.81 -12.53 -0.10 7.06 16 9 O -0.53 -7.88 15.24 5.27 0.08 -7.80 16 10 N -0.71 -7.55 5.55 -61.40 -0.34 -7.89 16 11 C 0.13 1.62 5.51 -4.05 -0.02 1.59 16 12 C -0.13 -1.60 3.75 -89.81 -0.34 -1.93 16 13 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 14 C -0.16 -2.55 7.43 -25.92 -0.19 -2.74 16 15 C 0.17 3.10 4.48 -67.12 -0.30 2.80 16 16 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 17 N -0.71 -17.48 5.40 -52.64 -0.28 -17.77 16 18 C -0.24 -6.67 9.97 -15.06 -0.15 -6.82 16 19 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 22 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 C -0.14 -2.16 7.39 -25.92 -0.19 -2.35 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.11 0.99 6.78 -51.93 -0.35 0.64 16 32 H 0.20 1.12 7.88 -52.48 -0.41 0.71 16 33 H 0.40 3.24 7.84 -40.82 -0.32 2.92 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.02 7.85 -51.93 -0.41 0.61 16 36 H 0.08 1.39 7.90 -51.92 -0.41 0.98 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.39 10.08 7.92 -40.82 -0.32 9.76 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 41 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 LS Contribution 349.85 15.07 5.27 5.27 Total: -1.00 -32.25 349.85 -7.24 -39.50 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.00 Total: 8.24 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -2.27 Total: -7.18 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.48 Total: -56.27 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: 0.29 Total: -6.68 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.25 -7.24 -39.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086214082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.892 kcal (2) G-P(sol) polarization free energy of solvation -32.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds