Wall clock time and date at job start Tue Mar 31 2020 03:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47418 * 2 1 4 4 O 1.33484 * 126.82852 * 270.10745 * 3 2 1 5 5 N 1.20660 * 113.15881 * 180.30195 * 4 3 2 6 6 C 1.30014 * 112.29897 * 359.75107 * 5 4 3 7 7 C 1.37355 * 126.82685 * 89.99462 * 3 2 1 8 8 C 1.47404 * 128.56897 * 0.02562 * 7 3 2 9 9 O 1.21615 * 119.99589 * 359.69080 * 8 7 3 10 10 N 1.34774 * 120.00373 * 179.70084 * 8 7 3 11 11 C 1.46499 * 120.00234 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47084 * 179.97438 * 11 10 8 13 13 H 1.09000 * 112.90903 * 43.74420 * 12 11 10 14 14 C 1.53784 * 113.61330 * 174.99792 * 12 11 10 15 15 C 1.53787 * 87.07923 * 139.97966 * 14 12 11 16 16 H 1.08997 * 113.61087 * 219.93398 * 15 14 12 17 17 N 1.46503 * 113.61181 * 89.11654 * 15 14 12 18 18 C 1.36936 * 119.99871 * 154.99790 * 17 15 14 19 19 H 1.07999 * 119.99965 * 359.97438 * 18 17 15 20 20 C 1.38809 * 119.99829 * 180.02562 * 18 17 15 21 21 N 1.31613 * 120.00147 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99875 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46767 * 59.99916 * 22 20 18 24 24 H 1.48497 * 109.47474 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47351 * 300.00354 * 22 20 18 26 26 C 1.53778 * 87.08035 * 334.56830 * 15 14 12 27 27 H 1.09003 * 109.47503 * 300.00395 * 1 2 3 28 28 H 1.09006 * 109.46883 * 59.99804 * 1 2 3 29 29 H 1.08996 * 109.47380 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47355 * 240.00008 * 2 1 3 31 31 H 1.09006 * 109.46883 * 120.00196 * 2 1 3 32 32 H 1.08006 * 127.33663 * 180.02562 * 6 5 4 33 33 H 0.97005 * 119.99833 * 359.97438 * 10 8 7 34 34 H 1.09004 * 109.47092 * 59.99495 * 11 10 8 35 35 H 1.08995 * 109.46661 * 299.99459 * 11 10 8 36 36 H 1.09004 * 113.61451 * 25.43452 * 14 12 11 37 37 H 1.08994 * 113.61477 * 254.52754 * 14 12 11 38 38 H 0.96997 * 119.99779 * 335.00324 * 17 15 14 39 39 H 0.97005 * 120.00204 * 180.02562 * 21 20 18 40 40 H 1.08999 * 113.61111 * 139.98327 * 26 15 14 41 41 H 1.09004 * 113.61682 * 270.87724 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2972 2.1758 -1.0685 5 7 2.6941 3.2791 -0.7833 6 6 2.7611 3.4623 0.5021 7 6 2.3068 2.1970 1.0995 8 6 2.1832 1.8465 2.5259 9 8 1.7874 0.7428 2.8487 10 7 2.5087 2.7491 3.4723 11 6 2.3853 2.4009 4.8900 12 6 2.8153 3.5930 5.7472 13 1 2.4182 4.5413 5.3850 14 6 2.6080 3.3740 7.2552 15 6 3.9583 4.0801 7.4634 16 1 4.5739 3.6249 8.2392 17 7 3.8444 5.5336 7.6073 18 6 4.8087 6.2323 8.2833 19 1 5.6530 5.7119 8.7107 20 6 4.7005 7.6094 8.4200 21 7 3.6708 8.2434 7.9005 22 14 6.0156 8.5626 9.3428 23 1 7.3274 8.3704 8.6737 24 1 5.6694 10.0066 9.3468 25 1 6.0960 8.0684 10.7408 26 6 4.3246 3.6288 6.0397 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.0816 4.3537 1.0209 33 1 2.8246 3.6294 3.2148 34 1 3.0240 1.5457 5.1109 35 1 1.3489 2.1477 5.1130 36 1 2.6144 2.3243 7.5489 37 1 1.7602 3.9238 7.6637 38 1 3.0858 6.0009 7.2238 39 1 3.5953 9.2058 7.9957 40 1 4.8626 4.3843 5.4671 41 1 4.8003 2.6488 6.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086493975.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:27 Heat of formation + Delta-G solvation = 25.071072 kcal Electronic energy + Delta-G solvation = -22752.968328 eV Core-core repulsion = 19250.047709 eV Total energy + Delta-G solvation = -3502.920619 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.99366 -40.86106 -39.81244 -36.16789 -35.58037 -35.09564 -34.54327 -32.11193 -31.33866 -28.93970 -26.41979 -26.13249 -25.33278 -24.96900 -23.27735 -22.34443 -21.45717 -19.89778 -19.34539 -18.92822 -18.76161 -17.52888 -17.07895 -16.68169 -16.38240 -16.02959 -15.75239 -15.51076 -15.31792 -14.74327 -14.64422 -14.63029 -14.38741 -13.74481 -13.54845 -13.27593 -12.92190 -12.91386 -12.87452 -12.61540 -12.48197 -12.20263 -12.06917 -11.87375 -11.57500 -11.49976 -11.47324 -11.17703 -10.91295 -10.78049 -10.58751 -10.05296 -8.99360 -7.95317 -5.23272 -0.00947 0.72821 1.48145 1.50237 1.56360 1.70908 2.11447 2.19366 2.55939 3.20359 3.25996 3.37479 3.54455 3.73088 3.80092 3.84035 4.01512 4.14614 4.19474 4.26722 4.34360 4.38033 4.42543 4.71025 4.74614 4.78223 4.83075 4.95201 4.97994 5.01530 5.10197 5.13679 5.25492 5.31493 5.36734 5.47518 5.55223 5.67841 6.28539 6.43407 7.07210 7.11554 7.33687 8.11467 8.33318 9.27739 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025477 B = 0.002750 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.753933 B =10180.887629 C =10926.556122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.049 4.049 3 C 0.059 3.941 4 O 0.087 5.913 5 N -0.377 5.377 6 C 0.031 3.969 7 C -0.283 4.283 8 C 0.597 3.403 9 O -0.563 6.563 10 N -0.709 5.709 11 C 0.142 3.858 12 C -0.103 4.103 13 H 0.082 0.918 14 C -0.134 4.134 15 C 0.142 3.858 16 H 0.059 0.941 17 N -0.720 5.720 18 C -0.242 4.242 19 H 0.076 0.924 20 C -0.075 4.075 21 N -0.969 5.969 22 Si 0.971 3.029 23 H -0.278 1.278 24 H -0.297 1.297 25 H -0.278 1.278 26 C -0.154 4.154 27 H 0.042 0.958 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.117 0.883 31 H 0.104 0.896 32 H 0.225 0.775 33 H 0.410 0.590 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.057 0.943 38 H 0.374 0.626 39 H 0.251 0.749 40 H 0.047 0.953 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.774 -17.163 -15.818 23.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.087 4.087 3 C -0.005 4.005 4 O 0.030 5.970 5 N -0.084 5.084 6 C -0.151 4.151 7 C -0.290 4.290 8 C 0.385 3.615 9 O -0.444 6.444 10 N -0.360 5.360 11 C 0.019 3.981 12 C -0.122 4.122 13 H 0.100 0.900 14 C -0.173 4.173 15 C 0.032 3.968 16 H 0.077 0.923 17 N -0.358 5.358 18 C -0.374 4.374 19 H 0.094 0.906 20 C -0.267 4.267 21 N -0.620 5.620 22 Si 0.800 3.200 23 H -0.205 1.205 24 H -0.223 1.223 25 H -0.204 1.204 26 C -0.195 4.195 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.109 0.891 30 H 0.135 0.865 31 H 0.123 0.877 32 H 0.241 0.759 33 H 0.246 0.754 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.126 0.874 37 H 0.076 0.924 38 H 0.207 0.793 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.630 -17.144 -16.529 24.260 hybrid contribution 0.482 1.547 1.104 1.961 sum -4.148 -15.596 -15.425 22.325 Atomic orbital electron populations 1.21698 0.92247 1.04064 1.01929 1.20529 0.97607 0.84133 1.06405 1.25391 0.93668 0.96716 0.84774 1.84569 1.61230 1.17667 1.33505 1.73663 1.17353 0.99119 1.18248 1.26846 0.99364 0.99732 0.89196 1.22092 1.15614 0.96247 0.95050 1.16898 0.76970 0.84099 0.83574 1.90763 1.48349 1.22528 1.82731 1.45794 1.66561 1.17221 1.06379 1.21367 1.01580 0.97043 0.78087 1.22499 0.97005 0.97522 0.95135 0.90016 1.23350 0.97924 1.01599 0.94429 1.21400 0.96370 0.83597 0.95406 0.92276 1.42299 1.26546 1.02085 1.64906 1.19628 1.01696 0.90156 1.25953 0.90612 1.25528 1.00426 0.97681 1.03056 1.69794 1.32174 1.08075 1.51910 0.85248 0.78831 0.77189 0.78715 1.20462 1.22315 1.20435 1.23726 0.95247 1.01018 0.99469 0.93855 0.91628 0.89113 0.86463 0.87748 0.75865 0.75372 0.90824 0.91307 0.87438 0.92400 0.79338 0.94029 0.93394 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.89 71.98 0.71 -1.08 16 2 C -0.05 -0.67 6.05 29.85 0.18 -0.49 16 3 C 0.06 1.11 6.80 25.48 0.17 1.29 16 4 O 0.09 1.78 11.06 77.06 0.85 2.63 16 5 N -0.38 -8.34 12.01 -54.19 -0.65 -8.99 16 6 C 0.03 0.60 11.95 87.29 1.04 1.64 16 7 C -0.28 -5.93 6.47 -18.74 -0.12 -6.05 16 8 C 0.60 14.20 7.81 86.66 0.68 14.87 16 9 O -0.56 -15.95 15.24 -4.08 -0.06 -16.02 16 10 N -0.71 -15.20 5.55 -466.40 -2.59 -17.79 16 11 C 0.14 3.22 5.51 86.38 0.48 3.70 16 12 C -0.10 -2.72 3.63 -10.27 -0.04 -2.76 16 13 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 14 C -0.13 -3.85 7.39 31.12 0.23 -3.62 16 15 C 0.14 5.22 4.56 45.52 0.21 5.43 16 16 H 0.06 2.19 8.10 -2.39 -0.02 2.17 16 17 N -0.72 -34.82 5.31 -320.44 -1.70 -36.52 16 18 C -0.24 -13.13 9.97 84.03 0.84 -12.29 16 19 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 20 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 21 N -0.97 -58.09 13.06 21.65 0.28 -57.81 16 22 Si 0.97 45.32 29.55 68.60 2.03 47.35 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 26 C -0.15 -4.63 7.43 31.12 0.23 -4.40 16 27 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.10 1.71 6.78 -2.38 -0.02 1.70 16 32 H 0.22 2.94 7.88 -2.91 -0.02 2.92 16 33 H 0.41 7.54 7.84 -92.70 -0.73 6.81 16 34 H 0.07 1.66 7.84 -2.38 -0.02 1.64 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 36 H 0.11 2.48 8.10 -2.39 -0.02 2.47 16 37 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.37 19.38 7.90 -92.71 -0.73 18.65 16 39 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 40 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.09 2.36 7.90 -2.38 -0.02 2.34 16 Total: -1.00 -67.38 349.69 2.83 -64.55 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: -0.40 Total: 30.07 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: 5.08 Total: -7.49 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -4.66 Total: -121.10 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.79 Total: -13.39 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -67.38 2.83 -64.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086493975.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.618 kcal (2) G-P(sol) polarization free energy of solvation -67.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds