Wall clock time and date at job start Tue Mar 31 2020 03:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50694 * 109.46974 * 2 1 4 4 N 1.33698 * 126.27790 * 270.32187 * 3 2 1 5 5 C 1.30611 * 108.99935 * 180.12095 * 4 3 2 6 6 O 1.33668 * 109.15305 * 359.60037 * 5 4 3 7 7 C 1.35340 * 107.68343 * 0.24602 * 6 5 4 8 8 C 1.46728 * 126.64345 * 179.97438 * 7 6 5 9 9 O 1.21679 * 119.99974 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99759 * 0.02562 * 8 7 6 11 11 C 1.46498 * 119.99831 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47217 * 180.02562 * 11 10 8 13 13 C 1.53786 * 113.61511 * 274.13764 * 12 11 10 14 14 C 1.53951 * 87.01923 * 220.04814 * 13 12 11 15 15 N 1.46503 * 113.53456 * 270.80641 * 14 13 12 16 16 C 1.36934 * 120.00116 * 252.49743 * 15 14 13 17 17 H 1.07993 * 120.00217 * 359.97438 * 16 15 14 18 18 C 1.38810 * 119.99920 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00213 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00063 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47050 * 89.99963 * 20 18 16 22 22 H 1.48500 * 109.47179 * 209.99929 * 20 18 16 23 23 H 1.48497 * 109.47173 * 329.99930 * 20 18 16 24 24 C 1.53771 * 87.11414 * 25.35989 * 14 13 12 25 25 H 1.09002 * 109.47375 * 60.00121 * 1 2 3 26 26 H 1.09001 * 109.47259 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47585 * 299.99791 * 1 2 3 28 28 H 1.09004 * 109.46874 * 240.00313 * 2 1 3 29 29 H 1.08993 * 109.46901 * 120.00211 * 2 1 3 30 30 H 1.08002 * 125.42615 * 179.87304 * 5 4 3 31 31 H 0.96998 * 120.00452 * 0.02562 * 10 8 7 32 32 H 1.08999 * 109.47509 * 300.00251 * 11 10 8 33 33 H 1.08996 * 109.47255 * 60.00346 * 11 10 8 34 34 H 1.09003 * 112.84997 * 45.33056 * 12 11 10 35 35 H 1.09001 * 113.61139 * 334.56612 * 13 12 11 36 36 H 1.08996 * 113.61696 * 105.46605 * 13 12 11 37 37 H 1.08997 * 113.74387 * 139.94790 * 14 13 12 38 38 H 0.97003 * 119.99820 * 72.49885 * 15 14 13 39 39 H 0.97004 * 120.00789 * 180.02562 * 19 18 16 40 40 H 1.08999 * 113.61846 * 220.08772 * 24 14 13 41 41 H 1.09001 * 113.61805 * 89.18507 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2902 2.1686 -1.0778 5 6 2.7104 3.3429 -0.6899 6 8 2.7254 3.3840 0.6461 7 6 2.3011 2.1813 1.0992 8 6 2.1586 1.7745 2.5017 9 8 1.7643 0.6560 2.7737 10 7 2.4644 2.6398 3.4887 11 6 2.3216 2.2338 4.8891 12 6 2.7304 3.3929 5.8003 13 6 4.2405 3.4494 6.0853 14 6 3.8719 3.8226 7.5327 15 7 3.7274 5.2647 7.7463 16 6 4.6801 5.9515 8.4505 17 1 5.5378 5.4299 8.8488 18 6 4.5428 7.3178 8.6533 19 7 3.4973 7.9534 8.1684 20 14 5.8421 8.2545 9.6145 21 1 6.8868 8.7493 8.6823 22 1 5.2109 9.4066 10.3071 23 1 6.4615 7.3524 10.6184 24 6 2.5363 3.0979 7.2970 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8932 -0.5138 0.8899 30 1 2.9958 4.1533 -1.3443 31 1 2.7783 3.5316 3.2720 32 1 1.2834 1.9662 5.0858 33 1 2.9619 1.3739 5.0852 34 1 2.3094 4.3477 5.4853 35 1 4.7380 2.4836 5.9966 36 1 4.7571 4.2438 5.5466 37 1 4.5016 3.3447 8.2831 38 1 2.9568 5.7331 7.3889 39 1 3.4015 8.9083 8.3097 40 1 1.6790 3.6088 7.7352 41 1 2.5669 2.0358 7.5402 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091223844.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:06 Heat of formation + Delta-G solvation = -14.671282 kcal Electronic energy + Delta-G solvation = -22806.290956 eV Core-core repulsion = 19301.646979 eV Total energy + Delta-G solvation = -3504.643977 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.50934 -40.88912 -39.83525 -36.92656 -35.96738 -34.97310 -33.98477 -32.16806 -30.95278 -28.70992 -26.44177 -25.96680 -25.27156 -24.55314 -23.20874 -22.31922 -21.61211 -20.02338 -19.40931 -19.04583 -17.97060 -17.49612 -17.27870 -16.69855 -16.34438 -15.97968 -15.80279 -15.70111 -15.19791 -14.89041 -14.71523 -14.59585 -14.39570 -13.77555 -13.73011 -13.29580 -12.95060 -12.93096 -12.64583 -12.53288 -12.22216 -12.17125 -12.11549 -12.07614 -11.98026 -11.58179 -11.49039 -11.20354 -10.94305 -10.80304 -10.35767 -9.93403 -9.00341 -7.95889 -5.24103 -0.27018 1.37369 1.40888 1.47940 1.48814 1.57398 1.93121 2.13185 2.55444 3.08498 3.36796 3.59321 3.62788 3.72545 3.77069 3.89318 4.13039 4.27066 4.30360 4.32307 4.38630 4.39336 4.46516 4.70461 4.72595 4.78069 4.93272 4.97741 4.99022 5.04995 5.11109 5.19028 5.19562 5.31678 5.34432 5.43779 5.52930 5.65851 6.22222 6.27955 6.52566 6.89695 7.32944 8.10340 8.32252 9.27417 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025752 B = 0.002782 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.038239 B =10061.258745 C =10791.124209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.053 4.053 3 C 0.078 3.922 4 N -0.521 5.521 5 C 0.226 3.774 6 O -0.195 6.195 7 C -0.138 4.138 8 C 0.605 3.395 9 O -0.541 6.541 10 N -0.707 5.707 11 C 0.140 3.860 12 C -0.104 4.104 13 C -0.155 4.155 14 C 0.143 3.857 15 N -0.721 5.721 16 C -0.242 4.242 17 H 0.077 0.923 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.972 3.028 21 H -0.288 1.288 22 H -0.296 1.296 23 H -0.269 1.269 24 C -0.132 4.132 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.041 0.959 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.307 0.693 31 H 0.411 0.589 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.046 0.954 37 H 0.061 0.939 38 H 0.374 0.626 39 H 0.251 0.749 40 H 0.058 0.942 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.284 -13.608 -17.496 22.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.091 4.091 3 C -0.046 4.046 4 N -0.249 5.249 5 C 0.001 3.999 6 O -0.082 6.082 7 C -0.193 4.193 8 C 0.391 3.609 9 O -0.421 6.421 10 N -0.357 5.357 11 C 0.017 3.983 12 C -0.123 4.123 13 C -0.196 4.196 14 C 0.033 3.967 15 N -0.359 5.359 16 C -0.374 4.374 17 H 0.094 0.906 18 C -0.268 4.268 19 N -0.620 5.620 20 Si 0.801 3.199 21 H -0.215 1.215 22 H -0.223 1.223 23 H -0.194 1.194 24 C -0.171 4.171 25 H 0.075 0.925 26 H 0.100 0.900 27 H 0.060 0.940 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.321 0.679 31 H 0.247 0.753 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.206 0.794 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.451 -14.473 -17.712 23.132 hybrid contribution 0.588 1.938 0.845 2.194 sum -2.863 -12.536 -16.867 21.209 Atomic orbital electron populations 1.21590 0.93123 1.03179 1.01240 1.20199 0.97192 0.87287 1.04393 1.22341 0.96940 0.98714 0.86605 1.70381 1.18777 1.04429 1.31343 1.29582 0.93588 0.97766 0.78939 1.84527 1.64786 1.33290 1.25565 1.22778 1.14281 0.86172 0.96049 1.16432 0.77891 0.84661 0.81903 1.90830 1.48351 1.20433 1.82441 1.45943 1.66121 1.17127 1.06463 1.21459 1.01942 0.97052 0.77851 1.22504 0.97192 0.97599 0.95011 1.23763 0.95172 1.01081 0.99546 1.21428 0.96386 0.83891 0.94977 1.42319 1.25960 1.03481 1.64115 1.19667 1.01401 0.91020 1.25265 0.90554 1.25545 1.00284 0.97754 1.03185 1.69805 1.31254 1.08670 1.52263 0.85161 0.78333 0.78085 0.78319 1.21473 1.22319 1.19430 1.23338 0.98061 1.01625 0.94097 0.92514 0.89991 0.93985 0.88884 0.89233 0.67871 0.75289 0.90893 0.90387 0.90241 0.88845 0.93546 0.92091 0.79375 0.94020 0.92291 0.87253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.89 71.98 0.71 -1.71 16 2 C -0.05 -1.06 5.93 29.85 0.18 -0.89 16 3 C 0.08 1.77 6.41 41.83 0.27 2.04 16 4 N -0.52 -10.54 11.26 -303.13 -3.41 -13.95 16 5 C 0.23 3.17 13.21 130.42 1.72 4.89 16 6 O -0.20 -3.82 10.57 -7.09 -0.07 -3.89 16 7 C -0.14 -3.26 7.18 24.05 0.17 -3.09 16 8 C 0.61 15.71 7.79 86.46 0.67 16.38 16 9 O -0.54 -16.06 14.79 -4.28 -0.06 -16.12 16 10 N -0.71 -16.72 5.55 -467.05 -2.59 -19.32 16 11 C 0.14 3.30 5.50 86.38 0.47 3.77 16 12 C -0.10 -2.86 3.62 -10.27 -0.04 -2.90 16 13 C -0.16 -4.79 7.44 31.18 0.23 -4.56 16 14 C 0.14 5.31 4.57 45.57 0.21 5.52 16 15 N -0.72 -35.16 5.31 -320.20 -1.70 -36.86 16 16 C -0.24 -13.15 9.97 84.03 0.84 -12.31 16 17 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 18 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 19 N -0.97 -58.34 13.06 21.65 0.28 -58.06 16 20 Si 0.97 45.42 29.55 68.60 2.03 47.45 16 21 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 22 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 24 C -0.13 -3.84 7.39 31.12 0.23 -3.61 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.09 2.00 6.46 -2.39 -0.02 1.98 16 30 H 0.31 0.46 8.06 -2.91 -0.02 0.43 16 31 H 0.41 9.10 8.27 -92.71 -0.77 8.33 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 33 H 0.08 1.79 7.88 -2.39 -0.02 1.77 16 34 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.09 2.44 7.92 -2.39 -0.02 2.42 16 36 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.06 2.27 8.10 -2.39 -0.02 2.25 16 38 H 0.37 19.57 7.90 -92.71 -0.73 18.84 16 39 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 40 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.11 2.54 8.10 -2.39 -0.02 2.52 16 Total: -1.00 -69.60 349.77 0.16 -69.44 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: -0.44 Total: 31.57 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 6.14 Total: -0.26 kcal Atomic # 7 Polarization: -120.77 SS G_CDS: -7.42 Total: -128.19 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.14 Total: -20.01 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -69.60 0.16 -69.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091223844.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.768 kcal (2) G-P(sol) polarization free energy of solvation -69.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds