Wall clock time and date at job start Tue Mar 31 2020 03:15:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.35310 * 126.66497 * 2 1
4 4 C 1.42271 * 103.92197 * 180.02562 * 3 2 1
5 5 C 1.48333 * 126.94333 * 180.02562 * 4 3 2
6 6 O 1.21498 * 119.99477 * 359.97438 * 5 4 3
7 7 N 1.34776 * 120.00441 * 179.97438 * 5 4 3
8 8 C 1.46494 * 119.99924 * 179.97438 * 7 5 4
9 9 C 1.53003 * 109.47093 * 180.02562 * 8 7 5
10 10 H 1.08997 * 110.77580 * 51.76189 * 9 8 7
11 11 C 1.54325 * 110.72022 * 288.52410 * 9 8 7
12 12 N 1.47290 * 107.30599 * 219.45263 * 11 9 8
13 13 C 1.36938 * 125.79079 * 178.92205 * 12 11 9
14 14 H 1.07995 * 120.00281 * 0.02562 * 13 12 11
15 15 C 1.38810 * 119.99650 * 180.02562 * 13 12 11
16 16 N 1.31621 * 120.00025 * 0.02562 * 15 13 12
17 17 Si 1.86799 * 120.00113 * 180.02562 * 15 13 12
18 18 H 1.48506 * 109.46993 * 359.97438 * 17 15 13
19 19 H 1.48503 * 109.47464 * 119.99742 * 17 15 13
20 20 H 1.48496 * 109.47378 * 240.00268 * 17 15 13
21 21 C 1.47425 * 108.55742 * 358.92448 * 12 11 9
22 22 C 1.54908 * 104.92961 * 24.15407 * 21 12 11
23 23 H 1.09008 * 111.00422 * 81.04917 * 22 21 12
24 24 C 1.52999 * 111.00368 * 204.85960 * 22 21 12
25 25 N 1.30990 * 106.12499 * 0.25912 * 4 3 2
26 26 O 1.20906 * 111.43179 * 359.53723 * 25 4 3
27 27 H 1.09003 * 109.46856 * 89.99826 * 1 2 3
28 28 H 1.08995 * 109.47124 * 209.99987 * 1 2 3
29 29 H 1.09001 * 109.46716 * 330.00511 * 1 2 3
30 30 H 1.08001 * 128.04008 * 0.04374 * 3 2 1
31 31 H 0.96994 * 119.99369 * 359.97438 * 7 5 4
32 32 H 1.09000 * 109.47310 * 60.00424 * 8 7 5
33 33 H 1.09004 * 109.47167 * 299.99783 * 8 7 5
34 34 H 1.09004 * 109.88239 * 338.86059 * 11 9 8
35 35 H 1.08999 * 109.88411 * 100.02489 * 11 9 8
36 36 H 0.97001 * 119.99611 * 180.02562 * 16 15 13
37 37 H 1.09002 * 110.36696 * 265.26054 * 21 12 11
38 38 H 1.08995 * 110.36608 * 143.04891 * 21 12 11
39 39 H 1.09001 * 109.47276 * 58.55057 * 24 22 21
40 40 H 1.09003 * 109.46690 * 178.54597 * 24 22 21
41 41 H 1.08998 * 109.47248 * 298.54758 * 24 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3150 1.0854 0.0000
4 6 3.6271 0.5354 -0.0006
5 6 4.9077 1.2840 -0.0003
6 8 4.9009 2.4990 0.0000
7 7 6.0786 0.6167 -0.0005
8 6 7.3432 1.3562 -0.0008
9 6 8.5116 0.3684 -0.0016
10 1 8.3993 -0.3627 -0.8022
11 6 8.6331 -0.3347 1.3668
12 7 10.0689 -0.4497 1.6744
13 6 10.6033 -0.9966 2.8104
14 1 9.9532 -1.3920 3.5768
15 6 11.9806 -1.0429 2.9768
16 7 12.7729 -0.5606 2.0430
17 14 12.7097 -1.7896 4.5261
18 1 11.6142 -2.2562 5.4136
19 1 13.5756 -2.9395 4.1613
20 1 13.5187 -0.7662 5.2355
21 6 10.8362 0.1232 0.5535
22 6 9.8641 1.1180 -0.1284
23 1 9.8372 2.0671 0.4071
24 6 10.2378 1.3306 -1.5967
25 7 3.4762 -0.7658 -0.0066
26 8 2.3073 -1.0750 -0.0005
27 1 -0.3633 0.0000 -1.0277
28 1 -0.3633 -0.8899 0.5138
29 1 -0.3633 0.8901 0.5138
30 1 2.0302 2.1271 0.0006
31 1 6.0839 -0.3533 -0.0004
32 1 7.3976 1.9832 0.8891
33 1 7.3973 1.9831 -0.8909
34 1 8.1364 0.2592 2.1342
35 1 8.1846 -1.3268 1.3150
36 1 13.7354 -0.5932 2.1592
37 1 11.1292 -0.6603 -0.1454
38 1 11.7166 0.6475 0.9252
39 1 10.2159 0.3743 -2.1194
40 1 9.5241 2.0132 -2.0581
41 1 11.2395 1.7558 -1.6589
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001092449235.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:15:29
Heat of formation + Delta-G solvation = 43.157178 kcal
Electronic energy + Delta-G solvation = -23105.108220 eV
Core-core repulsion = 19602.971873 eV
Total energy + Delta-G solvation = -3502.136347 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 293.153 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-45.32642 -39.72267 -37.98954 -34.82040 -34.40022 -33.63697 -32.87768 -30.74751
-29.41723 -28.18626 -26.23760 -25.51007 -24.31409 -23.01806 -22.45741 -20.43865
-19.88006 -19.19878 -18.08984 -17.83358 -17.05250 -16.68953 -15.94234 -15.41299
-14.95578 -14.50719 -14.21759 -14.05548 -13.78325 -13.68824 -13.66687 -13.17892
-12.84923 -12.76594 -12.64042 -11.94683 -11.72779 -11.55775 -11.48123 -11.15684
-10.88099 -10.81463 -10.68898 -10.48741 -10.15792 -9.99474 -9.91364 -9.77643
-9.72983 -9.40917 -9.08147 -8.65464 -6.83267 -5.65240 -3.06931 0.89969
1.41137 2.63923 2.91844 3.06345 3.39900 3.45431 3.47933 3.77432
4.23958 4.48463 4.63668 4.82888 4.95117 4.95569 5.10086 5.21097
5.21216 5.28737 5.38254 5.49563 5.56492 5.63411 5.73817 5.84632
6.03611 6.06966 6.18521 6.25065 6.34071 6.51585 6.58896 6.62491
6.77775 6.93505 7.33337 7.53590 7.63456 7.77215 7.86265 8.01787
8.36289 9.22313 9.82721 10.48006 11.38590
Molecular weight = 293.15amu
Principal moments of inertia in cm(-1)
A = 0.021612 B = 0.003151 C = 0.002860
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1295.250453 B = 8883.036724 C = 9788.564609
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 C -0.036 4.036
3 C -0.185 4.185
4 C -0.022 4.022
5 C 0.595 3.405
6 O -0.527 6.527
7 N -0.707 5.707
8 C 0.132 3.868
9 C -0.111 4.111
10 H 0.078 0.922
11 C 0.140 3.860
12 N -0.605 5.605
13 C -0.221 4.221
14 H 0.077 0.923
15 C -0.012 4.012
16 N -0.922 5.922
17 Si 0.914 3.086
18 H -0.280 1.280
19 H -0.290 1.290
20 H -0.290 1.290
21 C 0.158 3.842
22 C -0.110 4.110
23 H 0.072 0.928
24 C -0.135 4.135
25 N -0.330 5.330
26 O 0.122 5.878
27 H 0.090 0.910
28 H 0.086 0.914
29 H 0.094 0.906
30 H 0.180 0.820
31 H 0.408 0.592
32 H 0.074 0.926
33 H 0.071 0.929
34 H 0.024 0.976
35 H 0.019 0.981
36 H 0.251 0.749
37 H 0.013 0.987
38 H 0.107 0.893
39 H 0.051 0.949
40 H 0.044 0.956
41 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.000 2.533 -7.495 23.379
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.099 4.099
3 C -0.207 4.207
4 C -0.182 4.182
5 C 0.378 3.622
6 O -0.402 6.402
7 N -0.357 5.357
8 C 0.009 3.991
9 C -0.130 4.130
10 H 0.096 0.904
11 C 0.014 3.986
12 N -0.331 5.331
13 C -0.349 4.349
14 H 0.095 0.905
15 C -0.208 4.208
16 N -0.571 5.571
17 Si 0.745 3.255
18 H -0.205 1.205
19 H -0.218 1.218
20 H -0.217 1.217
21 C 0.034 3.966
22 C -0.130 4.130
23 H 0.091 0.909
24 C -0.192 4.192
25 N -0.031 5.031
26 O 0.046 5.954
27 H 0.108 0.892
28 H 0.105 0.895
29 H 0.112 0.888
30 H 0.198 0.802
31 H 0.243 0.757
32 H 0.092 0.908
33 H 0.089 0.911
34 H 0.042 0.958
35 H 0.037 0.963
36 H 0.062 0.938
37 H 0.031 0.969
38 H 0.125 0.875
39 H 0.070 0.930
40 H 0.063 0.937
41 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -20.845 2.374 -7.385 22.241
hybrid contribution 0.056 -0.213 0.778 0.809
sum -20.788 2.160 -6.607 21.920
Atomic orbital electron populations
1.20371 0.83387 1.04955 1.04343 1.24516 0.96582 0.85490 1.03349
1.22441 0.89724 1.01552 1.07028 1.23581 0.96940 0.90137 1.07496
1.16878 0.81639 0.86371 0.77295 1.90797 1.86795 1.12457 1.50118
1.45981 1.05516 1.11160 1.73089 1.21587 0.80543 0.94481 1.02513
1.22515 0.94077 0.97227 0.99166 0.90367 1.21401 0.88136 0.96463
0.92638 1.44552 0.99098 1.70473 1.18950 1.19123 0.90273 1.31172
0.94343 0.90495 1.24788 0.95884 1.01589 0.98496 1.69803 1.02809
1.51368 1.33112 0.85994 0.78953 0.78350 0.82187 1.20545 1.21753
1.21728 1.21987 0.94395 0.92693 0.87561 1.22604 0.94624 0.99803
0.96012 0.90938 1.21654 1.00916 1.00920 0.95744 1.74210 0.97190
1.15621 1.16075 1.84785 1.11127 1.33466 1.66047 0.89177 0.89544
0.88765 0.80218 0.75697 0.90760 0.91109 0.95771 0.96266 0.93782
0.96897 0.87516 0.93015 0.93671 0.92498
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.24 10.45 36.01 0.38 0.13 16
2 C -0.04 -0.29 7.47 -35.35 -0.26 -0.56 16
3 C -0.19 -1.86 10.92 -39.08 -0.43 -2.29 16
4 C -0.02 -0.29 7.19 -82.52 -0.59 -0.88 16
5 C 0.59 9.02 7.85 -12.11 -0.10 8.92 16
6 O -0.53 -9.25 16.95 5.37 0.09 -9.16 16
7 N -0.71 -10.24 5.47 -61.09 -0.33 -10.58 16
8 C 0.13 2.02 5.02 -4.04 -0.02 2.00 16
9 C -0.11 -1.89 2.43 -88.78 -0.22 -2.11 16
10 H 0.08 1.28 8.01 -51.93 -0.42 0.86 16
11 C 0.14 2.93 6.77 -2.92 -0.02 2.91 16
12 N -0.61 -15.64 3.40 -169.86 -0.58 -16.22 16
13 C -0.22 -6.24 10.28 -15.06 -0.15 -6.39 16
14 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16
15 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16
16 N -0.92 -27.02 10.09 55.49 0.56 -26.46 16
17 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16
18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
21 C 0.16 3.83 5.35 -2.53 -0.01 3.81 16
22 C -0.11 -2.05 3.09 -88.47 -0.27 -2.32 16
23 H 0.07 1.36 8.05 -51.92 -0.42 0.95 16
24 C -0.13 -2.08 9.29 37.16 0.35 -1.74 16
25 N -0.33 -4.21 11.84 33.29 0.39 -3.81 16
26 O 0.12 1.27 11.18 17.25 0.19 1.47 16
27 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16
28 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16
29 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16
30 H 0.18 1.49 8.06 -52.49 -0.42 1.07 16
31 H 0.41 5.56 8.23 -40.82 -0.34 5.22 16
32 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16
33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16
34 H 0.02 0.52 7.68 -51.93 -0.40 0.12 16
35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16
36 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16
37 H 0.01 0.33 8.04 -51.93 -0.42 -0.08 16
38 H 0.11 2.92 5.86 -51.93 -0.30 2.61 16
39 H 0.05 0.79 8.11 -51.93 -0.42 0.37 16
40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16
41 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16
LS Contribution 344.51 15.07 5.19 5.19
Total: -1.00 -32.96 344.51 -7.01 -39.97
By element:
Atomic # 1 Polarization: 7.33 SS G_CDS: -6.05 Total: 1.28 kcal
Atomic # 6 Polarization: 2.49 SS G_CDS: -1.45 Total: 1.04 kcal
Atomic # 7 Polarization: -57.11 SS G_CDS: 0.04 Total: -57.07 kcal
Atomic # 8 Polarization: -7.98 SS G_CDS: 0.28 Total: -7.70 kcal
Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal
Total LS contribution 5.19 Total: 5.19 kcal
Total: -32.96 -7.01 -39.97 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001092449235.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.127 kcal
(2) G-P(sol) polarization free energy of solvation -32.960 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.167 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.157 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds