Wall clock time and date at job start Tue Mar 31 2020 03:15:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.35310 * 126.66497 * 2 1
4 4 C 1.42271 * 103.92197 * 180.02562 * 3 2 1
5 5 C 1.48333 * 126.94333 * 180.02562 * 4 3 2
6 6 O 1.21498 * 119.99477 * 359.97438 * 5 4 3
7 7 N 1.34776 * 120.00441 * 179.97438 * 5 4 3
8 8 C 1.46494 * 119.99924 * 179.97438 * 7 5 4
9 9 C 1.53003 * 109.47093 * 180.02562 * 8 7 5
10 10 H 1.08997 * 110.77580 * 51.76189 * 9 8 7
11 11 C 1.54325 * 110.72022 * 288.52410 * 9 8 7
12 12 N 1.47290 * 107.30599 * 219.45263 * 11 9 8
13 13 C 1.36938 * 125.79079 * 178.92205 * 12 11 9
14 14 H 1.07995 * 120.00281 * 0.02562 * 13 12 11
15 15 C 1.38810 * 119.99650 * 180.02562 * 13 12 11
16 16 N 1.31621 * 120.00025 * 0.02562 * 15 13 12
17 17 Si 1.86799 * 120.00113 * 180.02562 * 15 13 12
18 18 H 1.48506 * 109.46993 * 359.97438 * 17 15 13
19 19 H 1.48503 * 109.47464 * 119.99742 * 17 15 13
20 20 H 1.48496 * 109.47378 * 240.00268 * 17 15 13
21 21 C 1.47425 * 108.55742 * 358.92448 * 12 11 9
22 22 C 1.54908 * 104.92961 * 24.15407 * 21 12 11
23 23 H 1.09008 * 111.00422 * 81.04917 * 22 21 12
24 24 C 1.52999 * 111.00368 * 204.85960 * 22 21 12
25 25 N 1.30990 * 106.12499 * 0.25912 * 4 3 2
26 26 O 1.20906 * 111.43179 * 359.53723 * 25 4 3
27 27 H 1.09003 * 109.46856 * 89.99826 * 1 2 3
28 28 H 1.08995 * 109.47124 * 209.99987 * 1 2 3
29 29 H 1.09001 * 109.46716 * 330.00511 * 1 2 3
30 30 H 1.08001 * 128.04008 * 0.04374 * 3 2 1
31 31 H 0.96994 * 119.99369 * 359.97438 * 7 5 4
32 32 H 1.09000 * 109.47310 * 60.00424 * 8 7 5
33 33 H 1.09004 * 109.47167 * 299.99783 * 8 7 5
34 34 H 1.09004 * 109.88239 * 338.86059 * 11 9 8
35 35 H 1.08999 * 109.88411 * 100.02489 * 11 9 8
36 36 H 0.97001 * 119.99611 * 180.02562 * 16 15 13
37 37 H 1.09002 * 110.36696 * 265.26054 * 21 12 11
38 38 H 1.08995 * 110.36608 * 143.04891 * 21 12 11
39 39 H 1.09001 * 109.47276 * 58.55057 * 24 22 21
40 40 H 1.09003 * 109.46690 * 178.54597 * 24 22 21
41 41 H 1.08998 * 109.47248 * 298.54758 * 24 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3150 1.0854 0.0000
4 6 3.6271 0.5354 -0.0006
5 6 4.9077 1.2840 -0.0003
6 8 4.9009 2.4990 0.0000
7 7 6.0786 0.6167 -0.0005
8 6 7.3432 1.3562 -0.0008
9 6 8.5116 0.3684 -0.0016
10 1 8.3993 -0.3627 -0.8022
11 6 8.6331 -0.3347 1.3668
12 7 10.0689 -0.4497 1.6744
13 6 10.6033 -0.9966 2.8104
14 1 9.9532 -1.3920 3.5768
15 6 11.9806 -1.0429 2.9768
16 7 12.7729 -0.5606 2.0430
17 14 12.7097 -1.7896 4.5261
18 1 11.6142 -2.2562 5.4136
19 1 13.5756 -2.9395 4.1613
20 1 13.5187 -0.7662 5.2355
21 6 10.8362 0.1232 0.5535
22 6 9.8641 1.1180 -0.1284
23 1 9.8372 2.0671 0.4071
24 6 10.2378 1.3306 -1.5967
25 7 3.4762 -0.7658 -0.0066
26 8 2.3073 -1.0750 -0.0005
27 1 -0.3633 0.0000 -1.0277
28 1 -0.3633 -0.8899 0.5138
29 1 -0.3633 0.8901 0.5138
30 1 2.0302 2.1271 0.0006
31 1 6.0839 -0.3533 -0.0004
32 1 7.3976 1.9832 0.8891
33 1 7.3973 1.9831 -0.8909
34 1 8.1364 0.2592 2.1342
35 1 8.1846 -1.3268 1.3150
36 1 13.7354 -0.5932 2.1592
37 1 11.1292 -0.6603 -0.1454
38 1 11.7166 0.6475 0.9252
39 1 10.2159 0.3743 -2.1194
40 1 9.5241 2.0132 -2.0581
41 1 11.2395 1.7558 -1.6589
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001092449235.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:15:29
Heat of formation + Delta-G solvation = 21.033479 kcal
Electronic energy + Delta-G solvation = -23106.067576 eV
Core-core repulsion = 19602.971873 eV
Total energy + Delta-G solvation = -3503.095702 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 293.153 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-46.16998 -40.96509 -39.59383 -36.24716 -35.21823 -34.81930 -34.20255 -32.58385
-30.91829 -28.69857 -28.00055 -27.04057 -25.63834 -24.24941 -23.64665 -21.73974
-21.52630 -20.59388 -18.94158 -18.93044 -18.62942 -17.93805 -17.29694 -16.84010
-16.52778 -15.93650 -15.62895 -15.32383 -14.79937 -14.76029 -14.47977 -14.39946
-14.06512 -13.93315 -13.59012 -13.43270 -13.32743 -13.08870 -12.79491 -12.72310
-12.53100 -12.41839 -11.96776 -11.91431 -11.73121 -11.59611 -11.57324 -11.45417
-11.12040 -10.77684 -10.41143 -10.30393 -8.91468 -7.79892 -5.24707 0.00169
0.65728 1.44365 1.45335 1.55730 1.74346 1.97216 2.07819 2.46699
2.83534 3.28817 3.47647 3.58816 3.72757 3.82045 3.92001 3.92515
4.12226 4.30746 4.34244 4.45565 4.56635 4.69476 4.71788 4.79055
4.79750 4.83386 4.87101 4.91355 5.04416 5.08297 5.22217 5.26316
5.34798 5.35468 5.46739 5.69783 5.81561 6.18583 6.29507 6.81082
7.01224 7.08716 7.75175 8.39408 9.21734
Molecular weight = 293.15amu
Principal moments of inertia in cm(-1)
A = 0.021612 B = 0.003151 C = 0.002860
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1295.250453 B = 8883.036724 C = 9788.564609
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 C -0.014 4.014
3 C -0.201 4.201
4 C -0.048 4.048
5 C 0.596 3.404
6 O -0.555 6.555
7 N -0.703 5.703
8 C 0.143 3.857
9 C -0.091 4.091
10 H 0.093 0.907
11 C 0.136 3.864
12 N -0.629 5.629
13 C -0.240 4.240
14 H 0.077 0.923
15 C -0.067 4.067
16 N -0.947 5.947
17 Si 0.981 3.019
18 H -0.269 1.269
19 H -0.290 1.290
20 H -0.290 1.290
21 C 0.161 3.839
22 C -0.098 4.098
23 H 0.070 0.930
24 C -0.128 4.128
25 N -0.351 5.351
26 O 0.124 5.876
27 H 0.110 0.890
28 H 0.101 0.899
29 H 0.112 0.888
30 H 0.194 0.806
31 H 0.412 0.588
32 H 0.062 0.938
33 H 0.086 0.914
34 H 0.020 0.980
35 H 0.022 0.978
36 H 0.248 0.752
37 H -0.010 1.010
38 H 0.071 0.929
39 H 0.054 0.946
40 H 0.075 0.925
41 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.559 2.503 -8.027 25.958
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.077 4.077
3 C -0.223 4.223
4 C -0.205 4.205
5 C 0.380 3.620
6 O -0.433 6.433
7 N -0.354 5.354
8 C 0.020 3.980
9 C -0.110 4.110
10 H 0.111 0.889
11 C 0.011 3.989
12 N -0.355 5.355
13 C -0.369 4.369
14 H 0.095 0.905
15 C -0.259 4.259
16 N -0.597 5.597
17 Si 0.809 3.191
18 H -0.193 1.193
19 H -0.217 1.217
20 H -0.217 1.217
21 C 0.036 3.964
22 C -0.119 4.119
23 H 0.088 0.912
24 C -0.185 4.185
25 N -0.052 5.052
26 O 0.047 5.953
27 H 0.128 0.872
28 H 0.119 0.881
29 H 0.131 0.869
30 H 0.211 0.789
31 H 0.248 0.752
32 H 0.080 0.920
33 H 0.105 0.895
34 H 0.038 0.962
35 H 0.040 0.960
36 H 0.057 0.943
37 H 0.008 0.992
38 H 0.089 0.911
39 H 0.073 0.927
40 H 0.093 0.907
41 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -23.424 2.332 -7.925 24.838
hybrid contribution 0.743 -0.245 0.958 1.237
sum -22.680 2.087 -6.968 23.818
Atomic orbital electron populations
1.20683 0.79673 1.06594 1.06045 1.25306 0.98158 0.83918 1.00288
1.22699 0.88727 1.02863 1.08043 1.23492 0.97016 0.90663 1.09370
1.17120 0.82288 0.86153 0.76402 1.90770 1.87328 1.13645 1.51545
1.45915 1.05251 1.11337 1.72918 1.21378 0.80178 0.93768 1.02695
1.22344 0.94106 0.97308 0.97210 0.88868 1.21551 0.85609 0.96980
0.94742 1.44876 1.01330 1.70477 1.18778 1.19462 0.90797 1.31271
0.95369 0.90505 1.25635 0.96300 1.02421 1.01568 1.70058 1.02633
1.52292 1.34719 0.84976 0.78116 0.77274 0.78755 1.19310 1.21731
1.21668 1.21781 0.94779 0.92785 0.87035 1.22442 0.93696 0.98079
0.97650 0.91150 1.21611 1.01745 1.01893 0.93274 1.74204 0.98430
1.15526 1.16991 1.84751 1.10790 1.34338 1.65436 0.87208 0.88075
0.86904 0.78876 0.75162 0.91998 0.89538 0.96180 0.95965 0.94259
0.99191 0.91069 0.92691 0.90660 0.92569
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.21 10.45 71.24 0.74 0.53 16
2 C -0.01 -0.19 7.47 25.01 0.19 0.00 16
3 C -0.20 -3.72 10.92 22.60 0.25 -3.47 16
4 C -0.05 -1.21 7.19 42.96 0.31 -0.90 16
5 C 0.60 17.73 7.85 86.93 0.68 18.42 16
6 O -0.56 -19.27 16.95 -3.71 -0.06 -19.33 16
7 N -0.70 -19.79 5.47 -465.50 -2.55 -22.33 16
8 C 0.14 4.20 5.02 86.38 0.43 4.63 16
9 C -0.09 -3.01 2.43 -9.60 -0.02 -3.03 16
10 H 0.09 2.87 8.01 -2.39 -0.02 2.85 16
11 C 0.14 5.74 6.77 86.68 0.59 6.33 16
12 N -0.63 -33.26 3.40 -691.31 -2.35 -35.62 16
13 C -0.24 -13.85 10.28 84.03 0.86 -12.99 16
14 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16
15 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16
16 N -0.95 -57.21 10.09 21.65 0.22 -56.99 16
17 Si 0.98 46.56 29.55 68.60 2.03 48.59 16
18 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16
19 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16
20 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16
21 C 0.16 8.00 5.35 86.85 0.47 8.47 16
22 C -0.10 -3.61 3.09 -9.40 -0.03 -3.64 16
23 H 0.07 2.62 8.05 -2.38 -0.02 2.60 16
24 C -0.13 -3.73 9.29 71.98 0.67 -3.06 16
25 N -0.35 -8.64 11.84 -49.52 -0.59 -9.23 16
26 O 0.12 2.39 11.18 71.90 0.80 3.19 16
27 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16
28 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16
29 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16
30 H 0.19 2.89 8.06 -2.91 -0.02 2.87 16
31 H 0.41 10.90 8.23 -92.71 -0.76 10.14 16
32 H 0.06 2.01 7.93 -2.39 -0.02 1.99 16
33 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16
34 H 0.02 0.87 7.68 -2.38 -0.02 0.85 16
35 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16
36 H 0.25 14.45 8.31 -92.71 -0.77 13.67 16
37 H -0.01 -0.52 8.04 -2.39 -0.02 -0.54 16
38 H 0.07 4.06 5.86 -2.39 -0.01 4.05 16
39 H 0.05 1.57 8.11 -2.39 -0.02 1.55 16
40 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16
41 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16
Total: -1.00 -73.63 344.51 3.38 -70.25
By element:
Atomic # 1 Polarization: 13.31 SS G_CDS: 0.28 Total: 13.58 kcal
Atomic # 6 Polarization: 2.29 SS G_CDS: 5.60 Total: 7.89 kcal
Atomic # 7 Polarization: -118.91 SS G_CDS: -5.27 Total: -124.17 kcal
Atomic # 8 Polarization: -16.88 SS G_CDS: 0.74 Total: -16.14 kcal
Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal
Total: -73.63 3.38 -70.25 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001092449235.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 91.285 kcal
(2) G-P(sol) polarization free energy of solvation -73.630 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.654 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.251 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.033 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds