Wall clock time and date at job start Tue Mar 31 2020 03:20:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 N 1.30014 * 127.33365 * 2 1
4 4 O 1.20658 * 112.29611 * 180.02562 * 3 2 1
5 5 C 1.33494 * 113.16160 * 359.97438 * 4 3 2
6 6 C 1.37361 * 106.33731 * 0.24713 * 5 4 3
7 7 C 1.47404 * 128.56066 * 179.75230 * 6 5 4
8 8 O 1.21606 * 119.99712 * 180.02562 * 7 6 5
9 9 N 1.34773 * 120.00218 * 0.03031 * 7 6 5
10 10 C 1.46501 * 120.00196 * 179.97438 * 9 7 6
11 11 C 1.53000 * 109.47049 * 179.97438 * 10 9 7
12 12 H 1.09005 * 110.64067 * 54.29957 * 11 10 9
13 13 C 1.54316 * 110.72064 * 291.15521 * 11 10 9
14 14 N 1.47024 * 107.27097 * 219.44233 * 13 11 10
15 15 C 1.36932 * 125.64903 * 178.97294 * 14 13 11
16 16 H 1.08004 * 120.00268 * 0.02562 * 15 14 13
17 17 C 1.38814 * 119.99956 * 180.02562 * 15 14 13
18 18 N 1.31618 * 120.00348 * 0.02562 * 17 15 14
19 19 Si 1.86804 * 119.99780 * 180.02562 * 17 15 14
20 20 H 1.48496 * 109.47492 * 60.00022 * 19 17 15
21 21 H 1.48503 * 109.47068 * 179.97438 * 19 17 15
22 22 H 1.48501 * 109.47288 * 299.99501 * 19 17 15
23 23 C 1.47427 * 108.70250 * 358.94590 * 14 13 11
24 24 C 1.55122 * 104.94152 * 23.99871 * 23 14 13
25 25 H 1.08998 * 110.93349 * 81.21731 * 24 23 14
26 26 C 1.53005 * 111.16121 * 205.13154 * 24 23 14
27 27 H 1.09004 * 109.46868 * 89.97233 * 1 2 3
28 28 H 1.09002 * 109.47192 * 209.97596 * 1 2 3
29 29 H 1.08998 * 109.47084 * 329.97730 * 1 2 3
30 30 H 1.08002 * 126.82805 * 179.97438 * 5 4 3
31 31 H 0.97005 * 119.99959 * 359.97438 * 9 7 6
32 32 H 1.09001 * 109.46824 * 299.99524 * 10 9 7
33 33 H 1.09005 * 109.46846 * 59.99425 * 10 9 7
34 34 H 1.08999 * 109.88416 * 338.86174 * 13 11 10
35 35 H 1.09004 * 109.88347 * 99.87471 * 13 11 10
36 36 H 0.96988 * 120.00270 * 180.02562 * 18 17 15
37 37 H 1.09000 * 110.36452 * 142.96445 * 23 14 13
38 38 H 1.08994 * 110.36168 * 265.28689 * 23 14 13
39 39 H 1.08994 * 109.46901 * 172.16995 * 26 24 23
40 40 H 1.09005 * 109.47015 * 292.17108 * 26 24 23
41 41 H 1.08993 * 109.46990 * 52.17129 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2955 1.0338 0.0000
4 8 3.4608 0.7207 -0.0005
5 6 3.6494 -0.6008 -0.0004
6 6 2.3991 -1.1696 -0.0054
7 6 2.0400 -2.5992 -0.0124
8 8 0.8705 -2.9323 -0.0166
9 7 3.0079 -3.5372 -0.0139
10 6 2.6510 -4.9580 -0.0203
11 6 3.9258 -5.8040 -0.0215
12 1 4.5737 -5.5239 0.8092
13 6 4.6712 -5.6665 -1.3657
14 7 5.1904 -6.9969 -1.7150
15 6 5.8959 -7.3062 -2.8471
16 1 6.1136 -6.5381 -3.5745
17 6 6.3312 -8.6070 -3.0598
18 7 6.0655 -9.5432 -2.1737
19 14 7.2943 -9.0288 -4.6039
20 1 8.5403 -8.2221 -4.6461
21 1 7.6404 -10.4729 -4.5924
22 1 6.4683 -8.7268 -5.8005
23 6 4.8262 -7.9426 -0.6443
24 6 3.5814 -7.3157 0.0367
25 1 2.6765 -7.5324 -0.5310
26 6 3.4452 -7.7919 1.4843
27 1 -0.3633 0.0005 -1.0277
28 1 -0.3634 -0.8902 0.5135
29 1 -0.3633 0.8898 0.5142
30 1 4.5967 -1.1195 -0.0011
31 1 3.9408 -3.2714 -0.0108
32 1 2.0622 -5.1887 0.8675
33 1 2.0660 -5.1817 -0.9125
34 1 3.9828 -5.3227 -2.1377
35 1 5.4948 -4.9600 -1.2623
36 1 6.3700 -10.4520 -2.3222
37 1 4.5788 -8.9166 -1.0664
38 1 5.6413 -8.0352 0.0733
39 1 2.6498 -7.2331 1.9773
40 1 3.2036 -8.8548 1.4960
41 1 4.3852 -7.6272 2.0109
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001092927417.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:20:58
Heat of formation + Delta-G solvation = 40.948911 kcal
Electronic energy + Delta-G solvation = -23298.262931 eV
Core-core repulsion = 19796.030827 eV
Total energy + Delta-G solvation = -3502.232105 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 293.153 amu
Computer time = 2.64 seconds
Orbital eigenvalues (eV)
-45.15509 -39.72212 -38.02071 -34.90982 -34.61526 -33.12701 -32.26899 -30.80375
-29.49531 -28.78133 -26.19386 -25.49074 -24.38112 -22.71884 -21.56185 -20.80400
-19.90761 -19.44791 -18.36191 -17.96934 -16.93653 -16.61674 -16.04133 -15.50164
-15.00298 -14.70143 -14.25961 -13.88898 -13.66819 -13.52111 -13.34127 -13.19053
-12.80214 -12.72949 -12.65390 -11.97531 -11.60785 -11.55916 -11.49729 -11.20270
-10.93263 -10.81685 -10.39754 -10.19529 -10.15360 -10.06187 -10.02179 -9.95629
-9.80970 -9.44969 -9.09183 -8.69050 -6.88218 -5.69380 -3.11560 0.81117
1.55241 2.65400 3.06889 3.10829 3.37681 3.42150 3.43293 3.79548
4.04050 4.44608 4.59257 4.72717 5.01671 5.09892 5.17226 5.23676
5.32884 5.35732 5.45167 5.48450 5.52609 5.69323 5.81218 5.91709
5.99913 6.04397 6.14089 6.20021 6.31575 6.47401 6.53879 6.55345
6.73172 6.88173 7.35893 7.48562 7.58259 7.82199 7.93158 8.05484
8.32266 9.17877 9.78673 10.43116 11.34219
Molecular weight = 293.15amu
Principal moments of inertia in cm(-1)
A = 0.021112 B = 0.003302 C = 0.003010
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1325.913884 B = 8477.661721 C = 9298.947819
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C 0.069 3.931
3 N -0.362 5.362
4 O 0.096 5.904
5 C -0.005 4.005
6 C -0.252 4.252
7 C 0.592 3.408
8 O -0.531 6.531
9 N -0.716 5.716
10 C 0.134 3.866
11 C -0.111 4.111
12 H 0.077 0.923
13 C 0.141 3.859
14 N -0.604 5.604
15 C -0.225 4.225
16 H 0.076 0.924
17 C -0.010 4.010
18 N -0.922 5.922
19 Si 0.915 3.085
20 H -0.285 1.285
21 H -0.290 1.290
22 H -0.285 1.285
23 C 0.159 3.841
24 C -0.111 4.111
25 H 0.072 0.928
26 C -0.135 4.135
27 H 0.084 0.916
28 H 0.096 0.904
29 H 0.076 0.924
30 H 0.227 0.773
31 H 0.400 0.600
32 H 0.069 0.931
33 H 0.072 0.928
34 H 0.024 0.976
35 H 0.017 0.983
36 H 0.253 0.747
37 H 0.107 0.893
38 H 0.013 0.987
39 H 0.045 0.955
40 H 0.055 0.945
41 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.309 14.560 7.717 17.645
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.093 4.093
3 N -0.070 5.070
4 O 0.037 5.963
5 C -0.087 4.087
6 C -0.259 4.259
7 C 0.378 3.622
8 O -0.409 6.409
9 N -0.367 5.367
10 C 0.011 3.989
11 C -0.130 4.130
12 H 0.096 0.904
13 C 0.015 3.985
14 N -0.330 5.330
15 C -0.354 4.354
16 H 0.094 0.906
17 C -0.205 4.205
18 N -0.570 5.570
19 Si 0.745 3.255
20 H -0.212 1.212
21 H -0.215 1.215
22 H -0.211 1.211
23 C 0.035 3.965
24 C -0.131 4.131
25 H 0.090 0.910
26 C -0.192 4.192
27 H 0.103 0.897
28 H 0.115 0.885
29 H 0.095 0.905
30 H 0.243 0.757
31 H 0.234 0.766
32 H 0.087 0.913
33 H 0.091 0.909
34 H 0.042 0.958
35 H 0.035 0.965
36 H 0.064 0.936
37 H 0.124 0.876
38 H 0.031 0.969
39 H 0.064 0.936
40 H 0.074 0.926
41 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -7.215 15.422 7.600 18.645
hybrid contribution 1.168 -0.926 -0.808 1.696
sum -6.047 14.495 6.792 17.112
Atomic orbital electron populations
1.20276 0.84849 1.04353 1.03999 1.24888 0.99011 0.86315 0.99128
1.73684 0.89263 1.23603 1.20434 1.84572 1.21569 1.23048 1.67076
1.26482 1.00415 0.84061 0.97739 1.22425 0.92842 0.95795 1.14888
1.16822 0.85613 0.82988 0.76773 1.90789 1.18210 1.81941 1.49971
1.45911 1.09126 1.07005 1.74664 1.21525 0.97471 0.77503 1.02430
1.22510 0.95104 0.96256 0.99128 0.90446 1.21333 0.94849 0.89658
0.92680 1.44462 1.64026 1.03076 1.21413 1.19022 1.26378 0.93978
0.95998 0.90585 1.24786 1.01212 0.95885 0.98653 1.69773 1.50703
1.01598 1.34924 0.86156 0.79703 0.77222 0.82426 1.21217 1.21538
1.21132 1.22025 0.89994 0.96038 0.88480 1.22639 1.01547 0.92767
0.96177 0.90979 1.21650 1.00792 1.00907 0.95880 0.89711 0.88547
0.90487 0.75653 0.76628 0.91273 0.90934 0.95822 0.96480 0.93625
0.87570 0.96920 0.93633 0.92610 0.92947
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.75 10.14 36.01 0.37 -0.38 16
2 C 0.07 0.80 7.58 -79.77 -0.60 0.20 16
3 N -0.36 -4.26 12.01 34.78 0.42 -3.84 16
4 O 0.10 0.96 11.06 18.65 0.21 1.16 16
5 C 0.00 -0.04 11.85 30.41 0.36 0.32 16
6 C -0.25 -2.79 6.47 -102.89 -0.67 -3.45 16
7 C 0.59 7.69 7.81 -12.53 -0.10 7.59 16
8 O -0.53 -8.58 15.70 5.27 0.08 -8.50 16
9 N -0.72 -8.30 5.43 -61.39 -0.33 -8.64 16
10 C 0.13 1.81 5.00 -4.04 -0.02 1.79 16
11 C -0.11 -1.70 2.45 -88.79 -0.22 -1.92 16
12 H 0.08 1.10 8.04 -51.93 -0.42 0.69 16
13 C 0.14 2.69 6.64 -3.07 -0.02 2.67 16
14 N -0.60 -14.84 3.40 -169.94 -0.58 -15.42 16
15 C -0.23 -6.13 10.27 -15.06 -0.15 -6.28 16
16 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16
17 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16
18 N -0.92 -26.27 10.09 55.49 0.56 -25.71 16
19 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16
20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16
21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
23 C 0.16 3.68 5.37 -2.41 -0.01 3.67 16
24 C -0.11 -1.94 3.10 -88.36 -0.27 -2.21 16
25 H 0.07 1.29 8.05 -51.93 -0.42 0.87 16
26 C -0.13 -1.95 9.32 37.16 0.35 -1.61 16
27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16
28 H 0.10 1.00 7.12 -51.93 -0.37 0.63 16
29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
30 H 0.23 0.79 7.68 -52.49 -0.40 0.39 16
31 H 0.40 3.61 7.59 -40.82 -0.31 3.30 16
32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
33 H 0.07 1.11 8.00 -51.93 -0.42 0.69 16
34 H 0.02 0.47 7.73 -51.93 -0.40 0.06 16
35 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16
36 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16
37 H 0.11 2.81 5.87 -51.93 -0.30 2.51 16
38 H 0.01 0.31 7.99 -51.93 -0.41 -0.10 16
39 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16
40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16
41 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16
LS Contribution 341.18 15.07 5.14 5.14
Total: -1.00 -32.52 341.18 -6.57 -39.09
By element:
Atomic # 1 Polarization: 5.99 SS G_CDS: -5.96 Total: 0.04 kcal
Atomic # 6 Polarization: 1.12 SS G_CDS: -1.09 Total: 0.03 kcal
Atomic # 7 Polarization: -53.67 SS G_CDS: 0.07 Total: -53.60 kcal
Atomic # 8 Polarization: -7.62 SS G_CDS: 0.29 Total: -7.33 kcal
Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal
Total LS contribution 5.14 Total: 5.14 kcal
Total: -32.52 -6.57 -39.09 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001092927417.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.041 kcal
(2) G-P(sol) polarization free energy of solvation -32.519 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.522 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.573 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.092 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.949 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.64 seconds