Wall clock time and date at job start Tue Mar 31 2020 03:20:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 N 1.30014 * 127.33365 * 2 1
4 4 O 1.20658 * 112.29611 * 180.02562 * 3 2 1
5 5 C 1.33494 * 113.16160 * 359.97438 * 4 3 2
6 6 C 1.37361 * 106.33731 * 0.24713 * 5 4 3
7 7 C 1.47404 * 128.56066 * 179.75230 * 6 5 4
8 8 O 1.21606 * 119.99712 * 180.02562 * 7 6 5
9 9 N 1.34773 * 120.00218 * 0.03031 * 7 6 5
10 10 C 1.46501 * 120.00196 * 179.97438 * 9 7 6
11 11 C 1.53000 * 109.47049 * 179.97438 * 10 9 7
12 12 H 1.09005 * 110.64067 * 54.29957 * 11 10 9
13 13 C 1.54316 * 110.72064 * 291.15521 * 11 10 9
14 14 N 1.47024 * 107.27097 * 219.44233 * 13 11 10
15 15 C 1.36932 * 125.64903 * 178.97294 * 14 13 11
16 16 H 1.08004 * 120.00268 * 0.02562 * 15 14 13
17 17 C 1.38814 * 119.99956 * 180.02562 * 15 14 13
18 18 N 1.31618 * 120.00348 * 0.02562 * 17 15 14
19 19 Si 1.86804 * 119.99780 * 180.02562 * 17 15 14
20 20 H 1.48496 * 109.47492 * 60.00022 * 19 17 15
21 21 H 1.48503 * 109.47068 * 179.97438 * 19 17 15
22 22 H 1.48501 * 109.47288 * 299.99501 * 19 17 15
23 23 C 1.47427 * 108.70250 * 358.94590 * 14 13 11
24 24 C 1.55122 * 104.94152 * 23.99871 * 23 14 13
25 25 H 1.08998 * 110.93349 * 81.21731 * 24 23 14
26 26 C 1.53005 * 111.16121 * 205.13154 * 24 23 14
27 27 H 1.09004 * 109.46868 * 89.97233 * 1 2 3
28 28 H 1.09002 * 109.47192 * 209.97596 * 1 2 3
29 29 H 1.08998 * 109.47084 * 329.97730 * 1 2 3
30 30 H 1.08002 * 126.82805 * 179.97438 * 5 4 3
31 31 H 0.97005 * 119.99959 * 359.97438 * 9 7 6
32 32 H 1.09001 * 109.46824 * 299.99524 * 10 9 7
33 33 H 1.09005 * 109.46846 * 59.99425 * 10 9 7
34 34 H 1.08999 * 109.88416 * 338.86174 * 13 11 10
35 35 H 1.09004 * 109.88347 * 99.87471 * 13 11 10
36 36 H 0.96988 * 120.00270 * 180.02562 * 18 17 15
37 37 H 1.09000 * 110.36452 * 142.96445 * 23 14 13
38 38 H 1.08994 * 110.36168 * 265.28689 * 23 14 13
39 39 H 1.08994 * 109.46901 * 172.16995 * 26 24 23
40 40 H 1.09005 * 109.47015 * 292.17108 * 26 24 23
41 41 H 1.08993 * 109.46990 * 52.17129 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2955 1.0338 0.0000
4 8 3.4608 0.7207 -0.0005
5 6 3.6494 -0.6008 -0.0004
6 6 2.3991 -1.1696 -0.0054
7 6 2.0400 -2.5992 -0.0124
8 8 0.8705 -2.9323 -0.0166
9 7 3.0079 -3.5372 -0.0139
10 6 2.6510 -4.9580 -0.0203
11 6 3.9258 -5.8040 -0.0215
12 1 4.5737 -5.5239 0.8092
13 6 4.6712 -5.6665 -1.3657
14 7 5.1904 -6.9969 -1.7150
15 6 5.8959 -7.3062 -2.8471
16 1 6.1136 -6.5381 -3.5745
17 6 6.3312 -8.6070 -3.0598
18 7 6.0655 -9.5432 -2.1737
19 14 7.2943 -9.0288 -4.6039
20 1 8.5403 -8.2221 -4.6461
21 1 7.6404 -10.4729 -4.5924
22 1 6.4683 -8.7268 -5.8005
23 6 4.8262 -7.9426 -0.6443
24 6 3.5814 -7.3157 0.0367
25 1 2.6765 -7.5324 -0.5310
26 6 3.4452 -7.7919 1.4843
27 1 -0.3633 0.0005 -1.0277
28 1 -0.3634 -0.8902 0.5135
29 1 -0.3633 0.8898 0.5142
30 1 4.5967 -1.1195 -0.0011
31 1 3.9408 -3.2714 -0.0108
32 1 2.0622 -5.1887 0.8675
33 1 2.0660 -5.1817 -0.9125
34 1 3.9828 -5.3227 -2.1377
35 1 5.4948 -4.9600 -1.2623
36 1 6.3700 -10.4520 -2.3222
37 1 4.5788 -8.9166 -1.0664
38 1 5.6413 -8.0352 0.0733
39 1 2.6498 -7.2331 1.9773
40 1 3.2036 -8.8548 1.4960
41 1 4.3852 -7.6272 2.0109
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001092927417.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:20:57
Heat of formation + Delta-G solvation = 19.167258 kcal
Electronic energy + Delta-G solvation = -23299.207455 eV
Core-core repulsion = 19796.030827 eV
Total energy + Delta-G solvation = -3503.176628 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 293.153 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-45.95544 -40.80043 -39.48223 -36.13890 -35.47727 -34.73669 -33.17024 -32.53162
-30.76122 -29.65495 -27.88121 -26.86086 -25.55226 -24.16229 -22.36539 -21.91259
-21.38321 -20.77797 -19.31320 -18.77467 -18.76949 -17.58960 -17.18869 -16.82512
-16.40486 -15.87446 -15.57563 -15.51245 -14.68676 -14.68109 -14.36107 -14.21310
-14.12562 -13.97562 -13.52090 -13.40950 -13.35531 -12.99171 -12.75957 -12.64315
-12.44837 -12.34329 -11.99121 -11.82032 -11.60349 -11.39702 -11.34750 -11.00387
-10.96632 -10.80555 -10.71243 -10.11705 -8.84935 -7.75167 -5.19194 0.07481
0.72392 1.47727 1.50162 1.56488 1.85745 2.13590 2.28999 2.50979
3.00966 3.31404 3.34058 3.64391 3.78521 3.82950 3.91733 3.98526
4.03576 4.40960 4.43172 4.53027 4.60567 4.61905 4.65416 4.76877
4.78614 4.84081 4.88626 5.01022 5.12711 5.15266 5.19399 5.34685
5.42011 5.43937 5.53232 5.75481 5.87668 6.34717 6.45631 7.10729
7.13707 7.19647 7.82164 8.45181 9.25957
Molecular weight = 293.15amu
Principal moments of inertia in cm(-1)
A = 0.021112 B = 0.003302 C = 0.003010
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1325.913884 B = 8477.661721 C = 9298.947819
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C 0.054 3.946
3 N -0.382 5.382
4 O 0.096 5.904
5 C 0.033 3.967
6 C -0.282 4.282
7 C 0.596 3.404
8 O -0.570 6.570
9 N -0.705 5.705
10 C 0.146 3.854
11 C -0.089 4.089
12 H 0.100 0.900
13 C 0.136 3.864
14 N -0.629 5.629
15 C -0.239 4.239
16 H 0.080 0.920
17 C -0.067 4.067
18 N -0.948 5.948
19 Si 0.977 3.023
20 H -0.277 1.277
21 H -0.295 1.295
22 H -0.279 1.279
23 C 0.162 3.838
24 C -0.101 4.101
25 H 0.065 0.935
26 C -0.128 4.128
27 H 0.088 0.912
28 H 0.085 0.915
29 H 0.090 0.910
30 H 0.274 0.726
31 H 0.415 0.585
32 H 0.080 0.920
33 H 0.054 0.946
34 H 0.020 0.980
35 H 0.034 0.966
36 H 0.246 0.754
37 H 0.066 0.934
38 H -0.009 1.009
39 H 0.074 0.926
40 H 0.052 0.948
41 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.692 16.219 8.356 19.112
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.108 4.108
3 N -0.091 5.091
4 O 0.038 5.962
5 C -0.050 4.050
6 C -0.290 4.290
7 C 0.383 3.617
8 O -0.450 6.450
9 N -0.357 5.357
10 C 0.022 3.978
11 C -0.108 4.108
12 H 0.118 0.882
13 C 0.011 3.989
14 N -0.355 5.355
15 C -0.368 4.368
16 H 0.098 0.902
17 C -0.259 4.259
18 N -0.598 5.598
19 Si 0.805 3.195
20 H -0.203 1.203
21 H -0.221 1.221
22 H -0.205 1.205
23 C 0.037 3.963
24 C -0.122 4.122
25 H 0.083 0.917
26 C -0.185 4.185
27 H 0.107 0.893
28 H 0.104 0.896
29 H 0.109 0.891
30 H 0.290 0.710
31 H 0.251 0.749
32 H 0.098 0.902
33 H 0.072 0.928
34 H 0.038 0.962
35 H 0.052 0.948
36 H 0.056 0.944
37 H 0.084 0.916
38 H 0.009 0.991
39 H 0.093 0.907
40 H 0.071 0.929
41 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -6.579 17.130 8.246 20.118
hybrid contribution 1.011 -1.405 -1.024 2.011
sum -5.568 15.725 7.223 18.178
Atomic orbital electron populations
1.20286 0.84325 1.04476 1.04282 1.25219 0.99824 0.86696 0.99076
1.73693 0.89852 1.24030 1.21482 1.84552 1.20900 1.23991 1.66714
1.27276 1.01020 0.83009 0.93649 1.22268 0.94148 0.94672 1.17901
1.16995 0.85104 0.83747 0.75838 1.90773 1.19800 1.82610 1.51834
1.45705 1.09835 1.05956 1.74188 1.21245 0.96084 0.78309 1.02129
1.22340 0.95748 0.94985 0.97733 0.88188 1.21538 0.95407 0.87474
0.94473 1.44785 1.63972 1.05614 1.21096 1.19413 1.26154 0.94218
0.97042 0.90190 1.25597 1.02763 0.96009 1.01554 1.70045 1.51787
1.01441 1.36493 0.85173 0.78609 0.76474 0.79204 1.20309 1.22117
1.20544 1.21788 0.91638 0.94929 0.87949 1.22468 0.98287 0.93930
0.97486 0.91700 1.21603 1.02048 1.01145 0.93723 0.89338 0.89582
0.89133 0.71026 0.74856 0.90219 0.92767 0.96243 0.94793 0.94419
0.91598 0.99121 0.90697 0.92934 0.92598
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.44 10.14 71.24 0.72 -0.72 16
2 C 0.05 1.19 7.58 45.16 0.34 1.53 16
3 N -0.38 -8.36 12.01 -44.79 -0.54 -8.90 16
4 O 0.10 1.65 11.06 76.97 0.85 2.51 16
5 C 0.03 0.40 11.85 67.61 0.80 1.20 16
6 C -0.28 -5.61 6.47 -18.74 -0.12 -5.73 16
7 C 0.60 14.31 7.81 86.66 0.68 14.99 16
8 O -0.57 -17.93 15.70 -4.05 -0.06 -17.99 16
9 N -0.71 -14.23 5.43 -466.39 -2.53 -16.77 16
10 C 0.15 3.60 5.00 86.38 0.43 4.03 16
11 C -0.09 -2.51 2.45 -9.61 -0.02 -2.53 16
12 H 0.10 2.45 8.04 -2.38 -0.02 2.43 16
13 C 0.14 4.97 6.64 86.73 0.58 5.55 16
14 N -0.63 -30.96 3.40 -691.57 -2.35 -33.31 16
15 C -0.24 -13.08 10.27 84.03 0.86 -12.21 16
16 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16
17 C -0.07 -3.72 5.49 84.86 0.47 -3.25 16
18 N -0.95 -55.66 10.09 21.65 0.22 -55.44 16
19 Si 0.98 44.93 29.55 68.60 2.03 46.96 16
20 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16
21 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16
22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16
23 C 0.16 7.60 5.37 86.93 0.47 8.07 16
24 C -0.10 -3.44 3.10 -9.33 -0.03 -3.46 16
25 H 0.06 2.29 8.05 -2.39 -0.02 2.27 16
26 C -0.13 -3.43 9.32 71.98 0.67 -2.76 16
27 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16
28 H 0.09 1.80 7.12 -2.39 -0.02 1.78 16
29 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16
30 H 0.27 0.38 7.68 -2.91 -0.02 0.36 16
31 H 0.41 5.76 7.59 -92.70 -0.70 5.05 16
32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16
33 H 0.05 1.57 8.00 -2.38 -0.02 1.56 16
34 H 0.02 0.74 7.73 -2.39 -0.02 0.72 16
35 H 0.03 1.14 8.14 -2.38 -0.02 1.13 16
36 H 0.25 14.12 8.31 -92.72 -0.77 13.35 16
37 H 0.07 3.64 5.87 -2.39 -0.01 3.63 16
38 H -0.01 -0.46 7.99 -2.39 -0.02 -0.48 16
39 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16
40 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16
41 H 0.05 1.47 8.08 -2.39 -0.02 1.45 16
Total: -1.00 -73.17 341.18 3.80 -69.37
By element:
Atomic # 1 Polarization: 8.54 SS G_CDS: 0.34 Total: 8.88 kcal
Atomic # 6 Polarization: -1.15 SS G_CDS: 5.84 Total: 4.70 kcal
Atomic # 7 Polarization: -109.22 SS G_CDS: -5.20 Total: -114.42 kcal
Atomic # 8 Polarization: -16.28 SS G_CDS: 0.79 Total: -15.49 kcal
Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal
Total: -73.17 3.80 -69.37 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001092927417.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.536 kcal
(2) G-P(sol) polarization free energy of solvation -73.169 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.367 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.368 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.167 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds