Wall clock time and date at job start Tue Mar 31 2020 03:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.55047 * 2 1 4 4 N 1.46502 * 109.47269 * 60.12739 * 3 2 1 5 5 C 1.34772 * 119.99716 * 179.97438 * 4 3 2 6 6 O 1.21694 * 120.00499 * 0.02562 * 5 4 3 7 7 C 1.46687 * 119.99629 * 179.97438 * 5 4 3 8 8 C 1.37870 * 126.23219 * 180.02562 * 7 5 4 9 9 C 1.39836 * 107.08393 * 180.02562 * 8 7 5 10 10 C 1.35448 * 107.86584 * 0.02562 * 9 8 7 11 11 N 1.35537 * 108.87230 * 359.72670 * 10 9 8 12 12 H 0.96996 * 125.67885 * 180.30042 * 11 10 9 13 13 C 1.53290 * 109.51186 * 239.87277 * 2 1 3 14 14 N 1.47232 * 108.40798 * 292.38068 * 13 2 1 15 15 C 1.36930 * 121.03328 * 129.46021 * 14 13 2 16 16 H 1.08002 * 120.00530 * 206.18598 * 15 14 13 17 17 C 1.38816 * 119.99608 * 26.18827 * 15 14 13 18 18 N 1.31615 * 120.00526 * 16.88476 * 17 15 14 19 19 Si 1.86806 * 119.99896 * 196.88547 * 17 15 14 20 20 H 1.48493 * 109.47161 * 89.99376 * 19 17 15 21 21 H 1.48497 * 109.47448 * 210.00216 * 19 17 15 22 22 H 1.48503 * 109.46954 * 330.00010 * 19 17 15 23 23 C 1.47154 * 117.98230 * 309.48797 * 14 13 2 24 24 C 1.53298 * 108.41825 * 50.51870 * 23 14 13 25 25 O 1.42959 * 109.51115 * 120.12528 * 2 1 3 26 26 H 1.09000 * 109.47604 * 299.87595 * 1 2 3 27 27 H 1.09004 * 109.47201 * 59.87360 * 1 2 3 28 28 H 1.09000 * 109.47333 * 179.87598 * 1 2 3 29 29 H 1.09002 * 109.46970 * 180.12437 * 3 2 1 30 30 H 1.08999 * 109.47186 * 300.12520 * 3 2 1 31 31 H 0.97000 * 120.00089 * 359.97438 * 4 3 2 32 32 H 1.08001 * 126.45890 * 0.03718 * 8 7 5 33 33 H 1.08006 * 126.06509 * 179.97438 * 9 8 7 34 34 H 1.08001 * 125.56301 * 179.97438 * 10 9 8 35 35 H 1.09001 * 109.68414 * 52.09887 * 13 2 1 36 36 H 1.09001 * 109.68139 * 172.65251 * 13 2 1 37 37 H 0.97002 * 120.00383 * 180.02562 * 18 17 15 38 38 H 1.08997 * 109.68310 * 290.77188 * 23 14 13 39 39 H 1.09005 * 109.67869 * 170.25970 * 23 14 13 40 40 H 1.09001 * 109.51044 * 67.59999 * 24 23 14 41 41 H 1.09000 * 109.51036 * 187.70217 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0420 1.4418 0.0000 4 7 1.5571 2.1322 1.1977 5 6 1.8854 3.4218 1.4114 6 8 2.5842 4.0128 0.6094 7 6 1.3995 4.1132 2.6104 8 6 1.6546 5.4235 2.9551 9 6 1.0009 5.6640 4.1676 10 6 0.3724 4.5217 4.5346 11 7 0.6020 3.5733 3.5939 12 1 0.2624 2.6649 3.6117 13 6 2.0420 -0.7252 -1.2497 14 7 1.6959 -2.1516 -1.1340 15 6 1.0613 -2.8090 -2.1539 16 1 0.4490 -3.6729 -1.9412 17 6 1.2049 -2.3650 -3.4612 18 7 2.1856 -1.5448 -3.7738 19 14 0.0060 -2.9315 -4.7770 20 1 -1.1377 -1.9869 -4.8445 21 1 0.6954 -2.9691 -6.0918 22 1 -0.4927 -4.2893 -4.4407 23 6 2.0522 -2.8497 0.1114 24 6 1.5396 -2.0210 1.2949 25 8 2.0075 -0.6763 1.1655 26 1 -0.3634 0.5119 0.8911 27 1 -0.3634 0.5158 -0.8889 28 1 -0.3634 -1.0276 -0.0022 29 1 3.1320 1.4403 -0.0022 30 1 1.6775 1.9568 -0.8888 31 1 0.9998 1.6613 1.8369 32 1 2.2474 6.1309 2.3942 33 1 0.9984 6.5952 4.7149 34 1 -0.2189 4.3894 5.4286 35 1 1.5704 -0.3042 -2.1376 36 1 3.1240 -0.6147 -1.3208 37 1 2.2857 -1.2342 -4.6873 38 1 3.1352 -2.9532 0.1774 39 1 1.5878 -3.8358 0.1252 40 1 0.4496 -2.0284 1.2995 41 1 1.9106 -2.4484 2.2264 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107735090.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:15 Heat of formation + Delta-G solvation = -30.065082 kcal Electronic energy + Delta-G solvation = -24060.146668 eV Core-core repulsion = 20554.835165 eV Total energy + Delta-G solvation = -3505.311502 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -42.19757 -40.92678 -39.83212 -36.59307 -35.99155 -33.40534 -33.21261 -31.90655 -30.35062 -29.59103 -28.07302 -27.21654 -25.02186 -23.81464 -22.74696 -21.41262 -21.07669 -20.54691 -19.83895 -18.92139 -17.49173 -17.14729 -16.87205 -16.63776 -16.25199 -15.99082 -15.62094 -15.30536 -15.21251 -14.85935 -14.72058 -14.58786 -14.42959 -13.94814 -13.52936 -13.44919 -13.20538 -13.15617 -12.95693 -12.80838 -12.55460 -12.46928 -12.14215 -11.99370 -11.87401 -11.37571 -11.11051 -10.78322 -10.52500 -10.28870 -9.93514 -9.16392 -8.74138 -7.90919 -5.37990 0.47039 1.45611 1.46976 1.55670 1.87155 1.99670 2.26346 2.36287 2.47289 2.75004 3.23639 3.47130 3.81329 3.93964 3.99046 4.06735 4.36013 4.39729 4.43805 4.44716 4.52417 4.54172 4.62412 4.68749 4.75637 4.92201 5.01590 5.08804 5.13313 5.18284 5.24979 5.30432 5.32662 5.51372 5.60324 5.76386 5.94711 6.27135 6.33683 6.43593 6.62014 7.05227 7.09019 7.74612 8.28652 9.14777 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025867 B = 0.003710 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.216503 B = 7544.969381 C = 7985.436265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.095 3.905 3 C 0.149 3.851 4 N -0.703 5.703 5 C 0.582 3.418 6 O -0.581 6.581 7 C -0.082 4.082 8 C -0.125 4.125 9 C -0.229 4.229 10 C 0.048 3.952 11 N -0.528 5.528 12 H 0.429 0.571 13 C 0.167 3.833 14 N -0.607 5.607 15 C -0.259 4.259 16 H 0.075 0.925 17 C -0.050 4.050 18 N -0.936 5.936 19 Si 0.967 3.033 20 H -0.284 1.284 21 H -0.299 1.299 22 H -0.266 1.266 23 C 0.101 3.899 24 C 0.052 3.948 25 O -0.386 6.386 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.409 0.591 32 H 0.134 0.866 33 H 0.164 0.836 34 H 0.217 0.783 35 H 0.067 0.933 36 H -0.008 1.008 37 H 0.250 0.750 38 H 0.011 0.989 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.708 7.818 19.260 22.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.054 3.946 3 C 0.024 3.976 4 N -0.355 5.355 5 C 0.371 3.629 6 O -0.462 6.462 7 C -0.195 4.195 8 C -0.153 4.153 9 C -0.252 4.252 10 C -0.089 4.089 11 N -0.125 5.125 12 H 0.269 0.731 13 C 0.040 3.960 14 N -0.331 5.331 15 C -0.389 4.389 16 H 0.092 0.908 17 C -0.245 4.245 18 N -0.582 5.582 19 Si 0.795 3.205 20 H -0.210 1.210 21 H -0.226 1.226 22 H -0.191 1.191 23 C -0.024 4.024 24 C -0.025 4.025 25 O -0.305 6.305 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.246 0.754 32 H 0.152 0.848 33 H 0.181 0.819 34 H 0.233 0.767 35 H 0.085 0.915 36 H 0.010 0.990 37 H 0.059 0.941 38 H 0.029 0.971 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.096 8.125 18.607 21.508 hybrid contribution -0.363 -1.068 -1.429 1.821 sum -7.459 7.057 17.177 20.013 Atomic orbital electron populations 1.22112 0.93819 1.02988 1.02092 1.22171 0.94692 0.90273 0.87502 1.21080 0.98915 0.89630 0.87939 1.45606 1.53440 1.11172 1.25234 1.17503 0.79487 0.81252 0.84637 1.90813 1.40458 1.67280 1.47641 1.20096 1.08726 0.96147 0.94547 1.21530 1.01885 0.93632 0.98247 1.21223 1.05226 1.00619 0.98143 1.22786 1.02595 0.87902 0.95612 1.42061 1.38802 1.14136 1.17527 0.73099 1.21059 0.95408 0.84435 0.95056 1.44270 1.68645 1.05491 1.14715 1.19515 1.21285 1.12046 0.86064 0.90752 1.25801 0.98782 1.00749 0.99203 1.70180 1.31059 1.38462 1.18520 0.85272 0.78496 0.78499 0.78232 1.21037 1.22580 1.19078 1.21825 0.97019 0.96408 0.87171 1.23128 0.99195 0.81660 0.98510 1.87821 1.73339 1.26558 1.42788 0.90454 0.92669 0.91725 0.92597 0.90768 0.75380 0.84763 0.81858 0.76680 0.91473 0.98983 0.94064 0.97079 0.90905 0.91893 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.80 7.92 71.98 0.57 -4.23 16 2 C 0.09 3.43 0.76 -10.70 -0.01 3.42 16 3 C 0.15 5.23 4.82 86.38 0.42 5.65 16 4 N -0.70 -19.86 5.15 -467.07 -2.41 -22.27 16 5 C 0.58 18.38 7.79 86.45 0.67 19.05 16 6 O -0.58 -23.57 16.88 -4.33 -0.07 -23.64 16 7 C -0.08 -2.03 7.06 40.35 0.28 -1.74 16 8 C -0.13 -2.99 10.65 22.57 0.24 -2.75 16 9 C -0.23 -3.71 10.81 22.01 0.24 -3.47 16 10 C 0.05 0.56 11.89 83.48 0.99 1.55 16 11 N -0.53 -7.97 5.99 -183.61 -1.10 -9.07 16 12 H 0.43 4.06 8.19 -92.71 -0.76 3.30 16 13 C 0.17 7.99 4.12 86.34 0.36 8.34 16 14 N -0.61 -29.42 2.57 -697.33 -1.79 -31.21 16 15 C -0.26 -13.68 9.65 84.04 0.81 -12.87 16 16 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 17 C -0.05 -2.72 4.95 84.86 0.42 -2.30 16 18 N -0.94 -55.07 11.14 21.65 0.24 -54.83 16 19 Si 0.97 43.89 29.59 68.60 2.03 45.92 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 23 C 0.10 3.97 6.73 86.35 0.58 4.55 16 24 C 0.05 1.59 6.60 72.08 0.48 2.06 16 25 O -0.39 -13.04 9.97 -148.98 -1.49 -14.53 16 26 H 0.08 1.82 6.88 -2.39 -0.02 1.81 16 27 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.06 2.19 6.11 -2.39 -0.01 2.18 16 29 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.41 8.97 6.34 -92.71 -0.59 8.38 16 32 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 33 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 34 H 0.22 0.46 8.06 -2.91 -0.02 0.44 16 35 H 0.07 3.60 6.14 -2.39 -0.01 3.59 16 36 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 37 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 38 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.07 2.66 7.96 -2.38 -0.02 2.64 16 40 H 0.06 1.77 6.25 -2.39 -0.01 1.75 16 41 H 0.12 2.75 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -73.31 333.43 1.18 -72.13 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -0.29 Total: 20.24 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 6.05 Total: 17.26 kcal Atomic # 7 Polarization: -112.33 SS G_CDS: -5.06 Total: -117.38 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -1.56 Total: -38.17 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -73.31 1.18 -72.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107735090.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.062 kcal (2) G-P(sol) polarization free energy of solvation -73.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds