Wall clock time and date at job start Tue Mar 31 2020 04:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47382 * 2 1 4 4 O 1.42899 * 109.47037 * 120.00250 * 2 1 3 5 5 C 1.35922 * 116.99962 * 155.05066 * 4 2 1 6 6 C 1.38847 * 120.40389 * 185.49204 * 5 4 2 7 7 N 1.31885 * 121.00217 * 179.97438 * 6 5 4 8 8 C 1.31678 * 121.94137 * 359.97438 * 7 6 5 9 9 C 1.39534 * 120.68968 * 0.02562 * 8 7 6 10 10 C 1.47844 * 120.53264 * 180.02562 * 9 8 7 11 11 O 1.21553 * 120.00219 * 179.97438 * 10 9 8 12 12 N 1.34777 * 120.00058 * 359.97266 * 10 9 8 13 13 C 1.46498 * 120.00149 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47139 * 180.02562 * 13 12 10 15 15 N 1.46499 * 109.47097 * 180.02562 * 14 13 12 16 16 C 1.36939 * 120.00378 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99341 * 0.02562 * 16 15 14 18 18 C 1.38807 * 120.00453 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00087 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00075 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46859 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46914 * 120.00306 * 20 18 16 23 23 H 1.48500 * 109.47083 * 240.00529 * 20 18 16 24 24 C 1.38845 * 120.40596 * 5.46797 * 5 4 2 25 25 H 1.08996 * 109.46676 * 299.99932 * 1 2 3 26 26 H 1.09001 * 109.46925 * 59.99611 * 1 2 3 27 27 H 1.08996 * 109.47052 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47087 * 239.99889 * 2 1 3 29 29 H 1.09001 * 109.47408 * 300.00094 * 3 2 1 30 30 H 1.09001 * 109.47100 * 59.99897 * 3 2 1 31 31 H 1.09002 * 109.47643 * 179.97438 * 3 2 1 32 32 H 1.08003 * 119.50040 * 359.95911 * 6 5 4 33 33 H 1.08000 * 119.65917 * 179.97438 * 8 7 6 34 34 H 0.97003 * 119.99908 * 0.02562 * 12 10 9 35 35 H 1.09005 * 109.47461 * 300.00580 * 13 12 10 36 36 H 1.08999 * 109.46893 * 60.00507 * 13 12 10 37 37 H 1.08998 * 109.47207 * 300.00070 * 14 13 12 38 38 H 1.08999 * 109.47024 * 60.00329 * 14 13 12 39 39 H 0.97002 * 119.99935 * 359.97438 * 15 14 13 40 40 H 0.96996 * 120.00332 * 179.97438 * 19 18 16 41 41 H 1.07993 * 120.87681 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2473 -1.2240 1.0982 6 6 3.7347 -1.9913 2.1477 7 7 4.9368 -2.5312 2.0934 8 6 5.7259 -2.3712 1.0515 9 6 5.3125 -1.6145 -0.0455 10 6 6.2011 -1.4376 -1.2138 11 8 5.8310 -0.7767 -2.1644 12 7 7.4217 -2.0090 -1.2247 13 6 8.3021 -1.8341 -2.3825 14 6 9.6163 -2.5794 -2.1411 15 7 10.4969 -2.4041 -3.2986 16 6 11.7371 -2.9845 -3.3097 17 1 12.0658 -3.5720 -2.4652 18 6 12.5713 -2.8188 -4.4068 19 7 12.1704 -2.1034 -5.4362 20 14 14.2628 -3.6113 -4.4221 21 1 14.4712 -4.3577 -3.1554 22 1 14.3600 -4.5483 -5.5700 23 1 15.3016 -2.5583 -4.5533 24 6 4.0429 -1.0260 -0.0224 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 3.1301 1.4425 0.0005 32 1 3.1202 -2.1483 3.0219 33 1 6.7037 -2.8298 1.0462 34 1 7.7170 -2.5366 -0.4661 35 1 7.8160 -2.2343 -3.2723 36 1 8.5067 -0.7733 -2.5263 37 1 10.1025 -2.1796 -1.2512 38 1 9.4113 -3.6403 -1.9975 39 1 10.2014 -1.8767 -4.0573 40 1 12.7534 -1.9873 -6.2026 41 1 3.6910 -0.4341 -0.8543 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132352683.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:03 Heat of formation + Delta-G solvation = -30.184399 kcal Electronic energy + Delta-G solvation = -22343.885121 eV Core-core repulsion = 18838.568444 eV Total energy + Delta-G solvation = -3505.316676 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.25637 -39.66163 -38.56721 -35.80774 -34.03416 -33.74125 -32.68422 -31.37778 -30.47172 -27.88475 -27.73746 -25.01908 -24.24046 -23.38893 -21.65210 -21.48317 -20.79412 -18.92052 -17.46060 -17.26000 -17.13691 -16.69907 -15.97814 -15.52040 -15.46032 -14.80927 -14.57516 -14.53485 -14.06578 -13.87709 -13.60178 -13.34136 -13.22183 -12.97828 -12.89790 -12.77289 -12.65500 -12.28102 -11.53072 -11.48340 -11.24684 -11.15115 -10.87384 -10.84907 -10.54057 -10.09526 -10.09470 -9.84708 -9.70103 -9.09319 -8.92579 -8.80871 -7.02436 -5.82145 -3.13100 0.31866 0.84949 2.61155 2.71087 3.02214 3.40881 3.46343 3.48758 3.54763 4.01847 4.21612 4.31208 4.39784 4.48233 4.53461 4.61718 4.62995 4.64498 5.04197 5.09542 5.23363 5.27870 5.29408 5.43866 5.47086 5.54249 5.61466 5.67365 5.71582 5.73022 5.89036 5.95107 6.07855 6.37359 6.65052 6.65617 6.80502 7.42757 7.50524 7.64463 8.10144 8.35307 9.46818 10.00850 10.35476 11.40462 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.033558 B = 0.002394 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.179150 B =11694.856528 C =12386.897142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 C -0.182 4.182 4 O -0.302 6.302 5 C 0.077 3.923 6 C 0.093 3.907 7 N -0.447 5.447 8 C 0.093 3.907 9 C -0.139 4.139 10 C 0.558 3.442 11 O -0.534 6.534 12 N -0.713 5.713 13 C 0.110 3.890 14 C 0.144 3.856 15 N -0.729 5.729 16 C -0.244 4.244 17 H 0.073 0.927 18 C -0.012 4.012 19 N -0.930 5.930 20 Si 0.910 3.090 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.112 4.112 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.168 0.832 33 H 0.164 0.836 34 H 0.400 0.600 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.584 3.408 14.891 28.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.016 3.984 3 C -0.239 4.239 4 O -0.215 6.215 5 C 0.029 3.971 6 C -0.066 4.066 7 N -0.155 5.155 8 C -0.065 4.065 9 C -0.145 4.145 10 C 0.343 3.657 11 O -0.411 6.411 12 N -0.364 5.364 13 C -0.013 4.013 14 C 0.015 3.985 15 N -0.375 5.375 16 C -0.375 4.375 17 H 0.091 0.909 18 C -0.209 4.209 19 N -0.579 5.579 20 Si 0.741 3.259 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.139 4.139 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.185 0.815 33 H 0.181 0.819 34 H 0.236 0.764 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -23.527 3.303 15.083 28.141 hybrid contribution 0.848 0.109 -0.935 1.267 sum -22.679 3.411 14.147 26.947 Atomic orbital electron populations 1.21852 0.91932 1.03340 1.03320 1.22575 0.95807 0.92894 0.87097 1.22399 1.02390 0.95647 1.03508 1.86152 1.28080 1.68035 1.39217 1.20053 0.86181 0.95466 0.95432 1.22428 0.92666 0.93938 0.97527 1.67749 1.03482 1.18885 1.25416 1.22919 0.99537 0.95759 0.88292 1.20922 0.95700 1.01154 0.96681 1.17971 0.81581 0.79910 0.86231 1.90792 1.74457 1.39920 1.35965 1.45847 1.15760 1.52906 1.21893 1.21661 0.90501 1.01738 0.87406 1.20768 0.88484 0.96744 0.92457 1.42189 1.15225 1.62752 1.17299 1.19237 0.91346 1.25307 1.01578 0.90916 1.24789 0.98923 1.00609 0.96562 1.69674 1.36961 1.43903 1.07318 0.86071 0.84008 0.78483 0.77320 1.20473 1.21765 1.21760 1.21894 0.93382 1.00168 0.98472 0.91298 0.90215 0.91511 0.90550 0.90529 0.91218 0.91726 0.81482 0.81897 0.76447 0.90926 0.90917 0.95634 0.95635 0.77992 0.93390 0.82828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.56 37.16 0.36 -0.41 16 2 C 0.07 0.52 2.85 -26.73 -0.08 0.44 16 3 C -0.18 -1.23 9.19 37.15 0.34 -0.89 16 4 O -0.30 -2.70 9.81 -19.49 -0.19 -2.89 16 5 C 0.08 0.75 6.61 -39.13 -0.26 0.49 16 6 C 0.09 0.89 11.13 -17.30 -0.19 0.69 16 7 N -0.45 -4.79 10.34 -12.79 -0.13 -4.92 16 8 C 0.09 0.96 10.71 -17.13 -0.18 0.78 16 9 C -0.14 -1.64 5.89 -104.84 -0.62 -2.26 16 10 C 0.56 7.99 7.78 -12.33 -0.10 7.89 16 11 O -0.53 -9.50 16.42 5.32 0.09 -9.41 16 12 N -0.71 -9.51 5.51 -61.25 -0.34 -9.84 16 13 C 0.11 1.84 5.79 -4.04 -0.02 1.81 16 14 C 0.14 2.74 6.37 -4.04 -0.03 2.71 16 15 N -0.73 -18.29 5.60 -59.91 -0.34 -18.62 16 16 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 17 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 20 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 C -0.11 -1.23 7.87 -38.71 -0.30 -1.53 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.56 6.35 -51.93 -0.33 0.23 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.52 6.93 -51.93 -0.36 0.16 16 32 H 0.17 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.16 1.29 6.42 -52.49 -0.34 0.95 16 34 H 0.40 4.14 6.53 -40.82 -0.27 3.87 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.39 10.25 7.67 -40.82 -0.31 9.93 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.15 1.65 5.26 -52.49 -0.28 1.38 16 LS Contribution 347.48 15.07 5.24 5.24 Total: -1.00 -33.41 347.48 -6.96 -40.36 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -5.66 Total: 7.90 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -1.33 Total: 2.39 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: -0.08 Total: -60.76 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -0.10 Total: -12.30 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.41 -6.96 -40.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132352683.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.180 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds