Wall clock time and date at job start Tue Mar 31 2020 04:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.44625 * 2 1 4 4 C 1.53036 * 109.45745 * 119.96693 * 2 1 3 5 5 C 1.52765 * 109.38090 * 181.26135 * 4 2 1 6 6 N 1.46927 * 109.00910 * 305.58479 * 5 4 2 7 7 C 1.34777 * 120.63553 * 233.58632 * 6 5 4 8 8 O 1.21611 * 120.00031 * 184.23798 * 7 6 5 9 9 C 1.47414 * 119.99711 * 3.96132 * 7 6 5 10 10 C 1.36097 * 126.44987 * 173.74153 * 9 7 6 11 11 O 1.34256 * 106.95079 * 179.84168 * 10 9 7 12 12 C 1.34053 * 108.22464 * 0.42937 * 11 10 9 13 13 N 1.29934 * 109.24611 * 359.72506 * 12 11 10 14 14 C 1.46927 * 118.73559 * 53.30817 * 6 5 4 15 15 C 1.53039 * 109.46061 * 240.03530 * 2 1 3 16 16 H 1.08999 * 109.49443 * 298.56747 * 15 2 1 17 17 C 1.52999 * 109.52544 * 58.64451 * 15 2 1 18 18 N 1.46500 * 109.47435 * 184.85620 * 17 15 2 19 19 C 1.36935 * 120.00038 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00332 * 0.02562 * 19 18 17 21 21 C 1.38813 * 119.99708 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99879 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 120.00247 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.46970 * 89.99797 * 23 21 19 25 25 H 1.48494 * 109.47187 * 209.99650 * 23 21 19 26 26 H 1.48499 * 109.47067 * 330.00273 * 23 21 19 27 27 H 1.09001 * 109.46963 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46718 * 299.96427 * 1 2 3 29 29 H 1.08999 * 109.46668 * 59.96293 * 1 2 3 30 30 H 1.08998 * 109.49888 * 301.33330 * 4 2 1 31 31 H 1.08999 * 109.50120 * 61.40731 * 4 2 1 32 32 H 1.09004 * 109.50979 * 185.71050 * 5 4 2 33 33 H 1.09000 * 109.43407 * 65.42256 * 5 4 2 34 34 H 1.07994 * 126.52355 * 0.02562 * 10 9 7 35 35 H 1.08001 * 125.37343 * 179.71093 * 12 11 10 36 36 H 1.09010 * 109.58465 * 66.43253 * 14 6 5 37 37 H 1.08998 * 109.58764 * 186.85463 * 14 6 5 38 38 H 1.09001 * 109.47407 * 304.85819 * 17 15 2 39 39 H 1.09006 * 109.46831 * 64.85714 * 17 15 2 40 40 H 0.97001 * 119.99615 * 359.97438 * 18 17 15 41 41 H 0.96995 * 120.00111 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7208 1.2501 5 6 3.5672 -0.6923 1.2642 6 7 4.0679 -1.2489 0.0000 7 6 4.9614 -2.2579 0.0000 8 8 5.4265 -2.6582 -1.0500 9 6 5.3796 -2.8721 1.2731 10 6 6.1747 -3.9668 1.4201 11 8 6.3049 -4.1819 2.7389 12 6 5.5979 -3.2461 3.3881 13 7 5.0384 -2.4548 2.5225 14 6 3.5714 -0.6886 -1.2642 15 6 2.0399 -0.7207 -1.2501 16 1 1.6978 -1.7556 -1.2383 17 6 1.5028 -0.0196 -2.4994 18 7 1.8950 -0.7764 -3.6909 19 6 1.5249 -0.3368 -4.9338 20 1 0.9443 0.5681 -5.0358 21 6 1.8970 -1.0536 -6.0628 22 7 1.5409 -0.6313 -7.2575 23 14 2.9020 -2.6184 -5.8864 24 1 1.9881 -3.7813 -5.7535 25 1 3.7570 -2.7955 -7.0876 26 1 3.7597 -2.5223 -4.6780 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5133 0.8903 29 1 -0.3632 0.5144 -0.8897 30 1 1.6572 -0.2207 2.1398 31 1 1.6974 -1.7555 1.2386 32 1 3.9347 -1.2908 2.0978 33 1 3.9097 0.3369 1.3715 34 1 6.6189 -4.5497 0.6268 35 1 5.5075 -3.1631 4.4611 36 1 3.9143 0.3410 -1.3673 37 1 3.9417 -1.2845 -2.0984 38 1 0.4155 0.0359 -2.4458 39 1 1.9157 0.9877 -2.5565 40 1 2.4175 -1.5885 -3.5993 41 1 1.8006 -1.1324 -8.0463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132705163.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:25:33 Heat of formation + Delta-G solvation = -14.159271 kcal Electronic energy + Delta-G solvation = -24070.417819 eV Core-core repulsion = 20565.796045 eV Total energy + Delta-G solvation = -3504.621775 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.45930 -41.30040 -39.25161 -36.86691 -36.01046 -34.95210 -33.72101 -31.94118 -31.38664 -29.34957 -27.75954 -25.51765 -24.66015 -23.72139 -23.64865 -22.57130 -21.52110 -20.61593 -19.67427 -18.69123 -17.85378 -17.71853 -17.13466 -16.74585 -16.29780 -16.01242 -15.87192 -15.47778 -15.36649 -14.92505 -14.68167 -14.62353 -14.32598 -14.23303 -14.14617 -13.42914 -13.29040 -12.90629 -12.70232 -12.65751 -12.48972 -12.26341 -12.18314 -11.92909 -11.88554 -11.61205 -11.48137 -11.27491 -11.03190 -10.47428 -10.27772 -9.68769 -9.31723 -8.07521 -5.39440 0.06943 1.02776 1.31895 1.34988 1.42270 1.65719 1.94263 2.15788 2.42433 2.99048 3.24401 3.46763 3.62877 3.77719 3.83067 3.84525 3.98625 4.08258 4.27363 4.39234 4.48806 4.52530 4.57547 4.61610 4.71952 4.77331 4.85722 4.90789 4.94233 5.04185 5.10082 5.16928 5.20177 5.35966 5.44763 5.54321 5.72231 5.77441 6.17441 6.23232 6.50501 6.96459 7.03052 7.80276 7.97514 9.14143 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016963 B = 0.004726 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.264500 B = 5922.681661 C = 7311.398165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 H 0.080 0.920 4 C -0.115 4.115 5 C 0.057 3.943 6 N -0.590 5.590 7 C 0.583 3.417 8 O -0.584 6.584 9 C -0.096 4.096 10 C 0.030 3.970 11 O -0.193 6.193 12 C 0.209 3.791 13 N -0.489 5.489 14 C 0.120 3.880 15 C -0.091 4.091 16 H 0.059 0.941 17 C 0.160 3.840 18 N -0.761 5.761 19 C -0.231 4.231 20 H 0.064 0.936 21 C -0.055 4.055 22 N -0.980 5.980 23 Si 0.944 3.056 24 H -0.277 1.277 25 H -0.291 1.291 26 H -0.267 1.267 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.105 0.895 31 H 0.054 0.946 32 H 0.165 0.835 33 H 0.068 0.932 34 H 0.243 0.757 35 H 0.309 0.691 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.042 0.958 39 H 0.028 0.972 40 H 0.361 0.639 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.095 -4.719 31.452 32.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.100 4.100 3 H 0.098 0.902 4 C -0.153 4.153 5 C -0.064 4.064 6 N -0.320 5.320 7 C 0.372 3.628 8 O -0.466 6.466 9 C -0.213 4.213 10 C -0.045 4.045 11 O -0.078 6.078 12 C -0.018 4.018 13 N -0.218 5.218 14 C -0.003 4.003 15 C -0.111 4.111 16 H 0.078 0.922 17 C 0.034 3.966 18 N -0.407 5.407 19 C -0.362 4.362 20 H 0.082 0.918 21 C -0.247 4.247 22 N -0.631 5.631 23 Si 0.772 3.228 24 H -0.203 1.203 25 H -0.217 1.217 26 H -0.193 1.193 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.123 0.877 31 H 0.073 0.927 32 H 0.181 0.819 33 H 0.087 0.913 34 H 0.259 0.741 35 H 0.324 0.676 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.194 0.806 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.851 -4.250 30.939 31.972 hybrid contribution 0.821 -1.219 -1.328 1.981 sum 7.672 -5.470 29.611 31.074 Atomic orbital electron populations 1.21860 0.94115 1.01839 1.02413 1.21117 0.96561 0.99537 0.92758 0.90157 1.21824 0.94618 1.00713 0.98115 1.23199 0.94953 1.01311 0.86942 1.48067 1.41435 1.33719 1.08778 1.17431 0.79076 0.79437 0.86830 1.90827 1.57537 1.64685 1.33517 1.21421 1.07065 1.00650 0.92185 1.25549 0.97663 0.97228 0.84024 1.84511 1.57323 1.48440 1.17555 1.29506 0.88020 0.82394 1.01915 1.70091 1.24550 1.28430 0.98688 1.21556 0.94297 0.98756 0.85673 1.21617 0.93658 1.00058 0.95766 0.92229 1.20908 0.97745 0.93929 0.84024 1.42859 1.65782 1.29400 1.02660 1.19081 1.26676 1.06709 0.83756 0.91793 1.25340 1.02450 1.02081 0.94838 1.69849 1.52977 1.42415 0.97816 0.85580 0.79178 0.80947 0.77125 1.20285 1.21707 1.19259 0.93253 0.90370 0.93129 0.87661 0.92701 0.81897 0.91326 0.74055 0.67650 0.90879 0.92406 0.94061 0.95402 0.80616 0.93237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 8.81 71.98 0.63 -2.50 16 2 C -0.08 -1.88 2.23 -10.77 -0.02 -1.90 16 3 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 4 C -0.11 -2.18 5.35 30.53 0.16 -2.01 16 5 C 0.06 1.20 6.29 86.22 0.54 1.75 16 6 N -0.59 -17.45 2.98 -823.60 -2.45 -19.90 16 7 C 0.58 18.61 7.69 86.66 0.67 19.27 16 8 O -0.58 -23.45 16.33 -4.07 -0.07 -23.51 16 9 C -0.10 -2.17 6.75 40.41 0.27 -1.90 16 10 C 0.03 0.50 11.95 67.32 0.80 1.31 16 11 O -0.19 -2.19 10.73 0.35 0.00 -2.19 16 12 C 0.21 1.57 13.19 130.52 1.72 3.30 16 13 N -0.49 -7.89 7.67 -305.14 -2.34 -10.23 16 14 C 0.12 4.14 5.51 86.36 0.48 4.62 16 15 C -0.09 -2.94 1.92 -10.72 -0.02 -2.96 16 16 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 17 C 0.16 6.37 5.41 86.38 0.47 6.83 16 18 N -0.76 -38.45 5.18 -343.45 -1.78 -40.23 16 19 C -0.23 -13.89 10.47 84.03 0.88 -13.01 16 20 H 0.06 4.11 8.06 -2.91 -0.02 4.09 16 21 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 22 N -0.98 -65.04 13.97 21.65 0.30 -64.74 16 23 Si 0.94 49.66 27.74 68.60 1.90 51.56 16 24 H -0.28 -14.10 7.11 99.48 0.71 -13.40 16 25 H -0.29 -15.21 7.11 99.48 0.71 -14.51 16 26 H -0.27 -13.71 6.52 99.48 0.65 -13.06 16 27 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.05 1.25 6.30 -2.39 -0.02 1.23 16 30 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.17 3.11 3.62 -58.41 -0.21 2.90 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.24 3.21 8.06 -2.91 -0.02 3.18 16 35 H 0.31 -1.63 8.06 -2.91 -0.02 -1.65 16 36 H 0.07 2.43 8.14 -2.38 -0.02 2.42 16 37 H 0.06 2.46 6.23 -2.39 -0.01 2.44 16 38 H 0.04 1.63 6.15 -2.39 -0.01 1.61 16 39 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.36 18.27 4.75 -92.71 -0.44 17.83 16 41 H 0.26 16.35 8.31 -92.71 -0.77 15.57 16 Total: -1.00 -82.64 329.20 2.97 -79.67 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.35 Total: 19.75 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 7.05 Total: 9.82 kcal Atomic # 7 Polarization: -128.84 SS G_CDS: -6.27 Total: -135.11 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.06 Total: -25.70 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 1.90 Total: 51.56 kcal Total: -82.64 2.97 -79.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132705163.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.516 kcal (2) G-P(sol) polarization free energy of solvation -82.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds