Wall clock time and date at job start Tue Mar 31 2020 04:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08996 * 109.46928 * 2 1 4 4 C 1.52997 * 109.47319 * 120.00711 * 2 1 3 5 5 C 1.52992 * 109.47448 * 184.99927 * 4 2 1 6 6 H 1.08998 * 109.46862 * 305.00378 * 5 4 2 7 7 C 1.52997 * 109.47482 * 184.99813 * 5 4 2 8 8 N 1.46506 * 109.46999 * 64.99463 * 5 4 2 9 9 C 1.34777 * 120.00033 * 205.00067 * 8 5 4 10 10 O 1.21534 * 119.99977 * 0.02562 * 9 8 5 11 11 C 1.47976 * 120.00212 * 180.02562 * 9 8 5 12 12 C 1.39918 * 120.90878 * 359.71950 * 11 9 8 13 13 C 1.38013 * 119.00377 * 179.79728 * 12 11 9 14 14 N 1.31983 * 120.89648 * 0.47030 * 13 12 11 15 15 O 1.41596 * 118.99353 * 179.76297 * 14 13 12 16 16 C 1.32001 * 122.02399 * 359.78011 * 14 13 12 17 17 C 1.38014 * 120.88760 * 359.97438 * 16 14 13 18 18 N 1.46500 * 109.46638 * 240.00390 * 2 1 3 19 19 C 1.36933 * 120.00090 * 85.00264 * 18 2 1 20 20 H 1.08002 * 120.00425 * 359.97438 * 19 18 2 21 21 C 1.38816 * 120.00649 * 179.97438 * 19 18 2 22 22 N 1.31627 * 119.99404 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 120.00481 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46891 * 90.00387 * 23 21 19 25 25 H 1.48496 * 109.47260 * 209.99791 * 23 21 19 26 26 H 1.48493 * 109.47146 * 330.00341 * 23 21 19 27 27 H 1.08994 * 109.46665 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46761 * 299.99274 * 1 2 3 29 29 H 1.08993 * 109.46916 * 59.99508 * 1 2 3 30 30 H 1.09001 * 109.47166 * 64.99160 * 4 2 1 31 31 H 1.09004 * 109.46717 * 305.00112 * 4 2 1 32 32 H 1.09002 * 109.47153 * 59.99783 * 7 5 4 33 33 H 1.09001 * 109.46832 * 299.99974 * 7 5 4 34 34 H 1.09004 * 109.47261 * 179.97438 * 7 5 4 35 35 H 0.96992 * 120.00062 * 25.00521 * 8 5 4 36 36 H 1.07995 * 120.49586 * 0.02562 * 12 11 9 37 37 H 1.08008 * 119.54994 * 180.22797 * 13 12 11 38 38 H 1.07994 * 119.55688 * 180.02562 * 16 14 13 39 39 H 1.08001 * 120.49089 * 179.97438 * 17 16 14 40 40 H 0.97004 * 119.99986 * 264.99564 * 18 2 1 41 41 H 0.96994 * 119.99809 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5649 -0.6135 1.3136 6 1 3.9954 -0.9923 0.3866 7 6 4.0853 -1.4386 2.4923 8 7 3.9480 0.7893 1.4924 9 6 5.1613 1.2134 1.0867 10 8 5.9373 0.4324 0.5721 11 6 5.5485 2.6301 1.2678 12 6 4.6679 3.5468 1.8526 13 6 5.0713 4.8577 2.0063 14 7 6.2644 5.2514 1.6021 15 8 6.6348 6.6071 1.7749 16 6 7.1230 4.4203 1.0412 17 6 6.8030 3.0909 0.8538 18 7 2.0183 -0.6905 -1.1962 19 6 2.1491 -0.0074 -2.3758 20 1 1.8919 1.0405 -2.4243 21 6 2.6122 -0.6614 -3.5092 22 7 2.9261 -1.9384 -3.4500 23 14 2.7899 0.2703 -5.1183 24 1 4.1519 0.8563 -5.2032 25 1 2.5802 -0.6612 -6.2556 26 1 1.7792 1.3568 -5.1754 27 1 -0.3632 -1.0276 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.7517 -1.7716 1.2054 31 1 1.6055 -0.2619 2.1369 32 1 3.8002 -2.4822 2.3592 33 1 3.6547 -1.0596 3.4192 34 1 5.1717 -1.3620 2.5379 35 1 3.3286 1.4126 1.9028 36 1 3.6887 3.2324 2.1821 37 1 4.4000 5.5719 2.4600 38 1 8.0892 4.7853 0.7255 39 1 7.5103 2.4166 0.3938 40 1 2.2490 -1.6317 -1.1528 41 1 3.2493 -2.3955 -4.2420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133636731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:30:00 Heat of formation + Delta-G solvation = 2.061290 kcal Electronic energy + Delta-G solvation = -23584.382731 eV Core-core repulsion = 20080.464333 eV Total energy + Delta-G solvation = -3503.918398 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.48945 -40.76169 -38.34711 -36.12960 -35.70809 -34.03340 -33.06342 -32.16972 -30.97398 -30.35041 -27.56431 -26.27687 -25.61569 -25.36830 -22.81499 -21.81793 -21.20357 -19.73406 -19.17445 -18.49997 -17.96464 -17.07931 -16.82145 -16.69447 -16.52576 -15.92306 -15.62917 -15.55224 -15.27923 -15.02861 -14.49574 -14.25475 -13.72038 -13.55778 -13.33714 -13.17635 -13.15670 -12.93347 -12.77632 -12.62828 -12.29175 -12.18237 -12.16286 -11.78807 -11.53384 -11.38315 -11.18865 -10.89229 -10.79914 -10.79129 -10.15814 -9.96604 -8.91908 -7.90504 -5.14933 -0.93050 -0.43862 1.42864 1.44263 1.45432 1.50379 1.52317 1.95179 2.35538 2.57316 3.21224 3.42497 3.44314 3.44870 3.49447 3.80932 3.86000 4.05516 4.15521 4.30387 4.41509 4.44900 4.58966 4.63286 4.70184 4.74026 4.84624 4.88066 4.98351 5.08585 5.16025 5.26370 5.40000 5.43831 5.53119 5.62828 5.68108 5.68724 5.77193 6.33332 6.47956 7.16218 7.39523 8.21017 8.39021 9.33238 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012333 B = 0.004792 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.846074 B = 5842.020029 C = 6874.920810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.162 3.838 3 H 0.050 0.950 4 C -0.119 4.119 5 C 0.146 3.854 6 H 0.052 0.948 7 C -0.153 4.153 8 N -0.689 5.689 9 C 0.554 3.446 10 O -0.565 6.565 11 C -0.086 4.086 12 C -0.066 4.066 13 C 0.079 3.921 14 N -0.132 5.132 15 O -0.614 6.614 16 C 0.075 3.925 17 C -0.064 4.064 18 N -0.732 5.732 19 C -0.222 4.222 20 H 0.071 0.929 21 C -0.075 4.075 22 N -0.968 5.968 23 Si 0.955 3.045 24 H -0.296 1.296 25 H -0.299 1.299 26 H -0.269 1.269 27 H 0.039 0.961 28 H 0.079 0.921 29 H 0.026 0.974 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.040 0.960 35 H 0.416 0.584 36 H 0.212 0.788 37 H 0.212 0.788 38 H 0.201 0.799 39 H 0.181 0.819 40 H 0.370 0.630 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.716 5.882 17.435 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.054 3.946 3 H 0.068 0.932 4 C -0.157 4.157 5 C 0.042 3.958 6 H 0.070 0.930 7 C -0.211 4.211 8 N -0.341 5.341 9 C 0.339 3.661 10 O -0.444 6.444 11 C -0.097 4.097 12 C -0.084 4.084 13 C -0.066 4.066 14 N 0.187 4.813 15 O -0.668 6.668 16 C -0.070 4.070 17 C -0.083 4.083 18 N -0.373 5.373 19 C -0.355 4.355 20 H 0.089 0.911 21 C -0.268 4.268 22 N -0.619 5.619 23 Si 0.786 3.214 24 H -0.224 1.224 25 H -0.225 1.225 26 H -0.194 1.194 27 H 0.058 0.942 28 H 0.098 0.902 29 H 0.046 0.954 30 H 0.094 0.906 31 H 0.131 0.869 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.059 0.941 35 H 0.254 0.746 36 H 0.229 0.771 37 H 0.229 0.771 38 H 0.218 0.782 39 H 0.199 0.801 40 H 0.202 0.798 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.100 5.892 17.020 18.011 hybrid contribution 0.300 0.278 -1.447 1.504 sum 0.200 6.170 15.572 16.751 Atomic orbital electron populations 1.22331 0.97976 1.00746 1.00759 1.20576 0.92495 0.95562 0.85980 0.93215 1.22103 0.92528 1.02445 0.98659 1.20918 0.95815 0.80333 0.98759 0.93012 1.22097 1.00580 1.00274 0.98154 1.45732 1.15517 1.12050 1.60846 1.18185 0.82752 0.86890 0.78224 1.90844 1.52533 1.56783 1.44240 1.20701 0.95719 0.94233 0.99027 1.22389 1.01820 0.89523 0.94699 1.23154 0.87664 0.97951 0.97860 1.43417 1.07773 1.11024 1.19067 1.97637 1.89309 0.88564 1.91248 1.22900 0.98637 0.89196 0.96255 1.22071 0.96928 0.93829 0.95475 1.42634 1.78150 1.10154 1.06314 1.19492 1.33682 0.93809 0.88476 0.91073 1.25356 1.03775 0.96713 1.00917 1.69784 1.53154 1.10027 1.28968 0.85402 0.77526 0.77710 0.80780 1.22364 1.22549 1.19437 0.94223 0.90199 0.95430 0.90626 0.86913 0.91314 0.89583 0.94087 0.74555 0.77106 0.77089 0.78215 0.80134 0.79830 0.94467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.49 9.49 71.99 0.68 -3.80 16 2 C 0.16 5.02 2.84 44.99 0.13 5.15 16 3 H 0.05 1.50 7.56 -2.39 -0.02 1.48 16 4 C -0.12 -2.65 4.29 30.59 0.13 -2.52 16 5 C 0.15 3.69 2.52 44.99 0.11 3.81 16 6 H 0.05 1.97 7.05 -2.39 -0.02 1.96 16 7 C -0.15 -3.11 9.48 71.98 0.68 -2.43 16 8 N -0.69 -13.73 4.41 -445.29 -1.96 -15.69 16 9 C 0.55 13.89 7.76 86.82 0.67 14.56 16 10 O -0.57 -20.26 16.11 -3.82 -0.06 -20.32 16 11 C -0.09 -1.53 5.91 -19.88 -0.12 -1.65 16 12 C -0.07 -0.69 9.61 22.62 0.22 -0.48 16 13 C 0.08 1.20 10.67 84.62 0.90 2.10 16 14 N -0.13 -3.25 3.58 -195.98 -0.70 -3.95 16 15 O -0.61 -23.71 20.04 -38.77 -0.78 -24.49 16 16 C 0.07 1.45 10.67 84.61 0.90 2.36 16 17 C -0.06 -1.14 9.68 22.62 0.22 -0.92 16 18 N -0.73 -33.23 4.49 -322.93 -1.45 -34.68 16 19 C -0.22 -11.68 9.93 84.04 0.83 -10.85 16 20 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 21 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 22 N -0.97 -58.74 13.06 21.65 0.28 -58.46 16 23 Si 0.95 46.23 29.55 68.60 2.03 48.26 16 24 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 25 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 26 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 27 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 31 H 0.11 1.46 8.14 -2.39 -0.02 1.45 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.42 4.41 6.74 -92.71 -0.62 3.78 16 36 H 0.21 0.22 6.53 -2.91 -0.02 0.21 16 37 H 0.21 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.20 3.16 8.06 -2.91 -0.02 3.13 16 39 H 0.18 3.08 7.74 -2.91 -0.02 3.06 16 40 H 0.37 18.63 7.80 -92.71 -0.72 17.90 16 41 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -88.51 351.72 2.90 -85.62 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -0.30 Total: 22.19 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 5.84 Total: 1.53 kcal Atomic # 7 Polarization: -108.95 SS G_CDS: -3.83 Total: -112.78 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -0.84 Total: -44.81 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -88.51 2.90 -85.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133636731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.678 kcal (2) G-P(sol) polarization free energy of solvation -88.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds