Wall clock time and date at job start Tue Mar 31 2020 04:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.46951 * 2 1 4 4 C 1.53006 * 109.46840 * 240.00584 * 2 1 3 5 5 C 1.53000 * 109.46856 * 174.99975 * 4 2 1 6 6 H 1.08994 * 109.47294 * 304.99435 * 5 4 2 7 7 C 1.53009 * 109.46585 * 184.99689 * 5 4 2 8 8 N 1.46496 * 109.47138 * 65.00042 * 5 4 2 9 9 C 1.36935 * 120.00054 * 204.99376 * 8 5 4 10 10 H 1.08002 * 119.99807 * 0.02562 * 9 8 5 11 11 C 1.38812 * 120.00240 * 179.97438 * 9 8 5 12 12 N 1.31619 * 119.99892 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00062 * 180.02562 * 11 9 8 14 14 H 1.48509 * 109.47112 * 60.00411 * 13 11 9 15 15 H 1.48498 * 109.47289 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47386 * 300.00502 * 13 11 9 17 17 N 1.46493 * 109.47185 * 120.00757 * 2 1 3 18 18 C 1.34782 * 119.99714 * 274.99570 * 17 2 1 19 19 O 1.21577 * 120.00081 * 0.02562 * 18 17 2 20 20 C 1.47617 * 119.99834 * 180.02562 * 18 17 2 21 21 C 1.40280 * 120.49669 * 179.97438 * 20 18 17 22 22 C 1.37959 * 118.35668 * 179.72645 * 21 20 18 23 23 C 1.39168 * 119.26338 * 0.25575 * 22 21 20 24 24 O 1.35501 * 119.52593 * 179.97438 * 23 22 21 25 25 N 1.32405 * 120.94757 * 0.02562 * 23 22 21 26 26 C 1.31662 * 121.80146 * 359.97438 * 25 23 22 27 27 H 1.09004 * 109.47504 * 59.99388 * 1 2 3 28 28 H 1.09001 * 109.47500 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47101 * 299.99230 * 1 2 3 30 30 H 1.09007 * 109.46970 * 295.00119 * 4 2 1 31 31 H 1.08996 * 109.47056 * 54.99441 * 4 2 1 32 32 H 1.09004 * 109.46661 * 180.02562 * 7 5 4 33 33 H 1.08994 * 109.47098 * 299.99867 * 7 5 4 34 34 H 1.09002 * 109.46830 * 60.00310 * 7 5 4 35 35 H 0.97001 * 120.00464 * 24.99689 * 8 5 4 36 36 H 0.97004 * 120.00043 * 179.97438 * 12 11 9 37 37 H 0.96996 * 120.00353 * 94.99857 * 17 2 1 38 38 H 1.08002 * 120.82435 * 0.02562 * 21 20 18 39 39 H 1.08003 * 120.37105 * 180.23202 * 22 21 20 40 40 H 0.96699 * 113.99976 * 90.00354 * 24 23 22 41 41 H 1.08007 * 119.68735 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5647 -0.6132 -1.3138 6 1 3.8570 0.4358 -1.2679 7 6 4.0643 -1.2249 -2.6243 8 7 4.1536 -1.3342 -0.1827 9 6 5.3943 -0.9857 0.2803 10 1 5.9385 -0.1790 -0.1882 11 6 5.9521 -1.6685 1.3525 12 7 5.2886 -2.6513 1.9238 13 14 7.6443 -1.1926 1.9845 14 1 7.6255 0.2234 2.4317 15 1 8.0103 -2.0681 3.1268 16 1 8.6425 -1.3551 0.8972 17 7 2.0183 -0.6907 1.1960 18 6 2.1471 -0.0184 2.3571 19 8 1.8576 1.1611 2.4119 20 6 2.6397 -0.7143 3.5621 21 6 2.7783 -0.0246 4.7758 22 6 3.2371 -0.7196 5.8757 23 6 3.5501 -2.0693 5.7456 24 8 4.0017 -2.7569 6.8223 25 7 3.4139 -2.6910 4.5845 26 6 2.9796 -2.0665 3.5098 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.7515 -1.7715 -1.2058 31 1 1.6052 -0.2616 -2.1370 32 1 5.1507 -1.1484 -2.6700 33 1 3.7721 -2.2739 -2.6702 34 1 3.6261 -0.6884 -3.4659 35 1 3.6647 -2.0585 0.2384 36 1 5.6785 -3.1287 2.6728 37 1 2.2490 -1.6318 1.1524 38 1 2.5273 1.0233 4.8486 39 1 3.3525 -0.2216 6.8271 40 1 3.3022 -3.1697 7.3471 41 1 2.8811 -2.6072 2.5801 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136074711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:45 Heat of formation + Delta-G solvation = -26.416442 kcal Electronic energy + Delta-G solvation = -24755.123745 eV Core-core repulsion = 21249.970459 eV Total energy + Delta-G solvation = -3505.153285 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.20989 -38.98410 -36.98041 -36.42554 -34.21981 -32.42749 -32.01762 -31.08977 -29.43173 -28.46487 -26.35985 -23.91515 -23.70271 -23.13357 -21.20569 -20.31818 -19.74962 -18.49938 -17.30703 -17.20447 -16.53902 -15.55194 -15.49537 -14.80405 -14.53318 -14.28912 -13.87485 -13.79369 -13.50722 -13.00743 -12.79035 -12.74439 -12.42981 -12.22543 -12.13378 -11.87540 -11.76202 -11.68562 -11.53087 -11.03414 -10.83388 -10.74910 -10.39571 -10.27922 -9.94554 -9.71906 -9.52403 -9.47783 -9.00867 -8.82899 -8.52844 -8.33561 -6.96679 -5.83192 -3.06737 1.07701 1.70663 3.37238 3.43014 3.49320 3.51770 3.75398 3.95344 4.35661 4.58032 5.00520 5.12550 5.26760 5.36838 5.39196 5.45140 5.53342 5.54548 5.65346 5.69711 5.85485 5.93599 5.98054 6.07553 6.12034 6.21739 6.28075 6.34657 6.39858 6.52591 6.55572 6.57684 6.83104 6.89495 7.02769 7.12350 7.67383 7.72832 8.12223 8.36818 8.40098 8.82936 9.48030 9.98894 10.34496 11.38933 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.007787 C = 0.005386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.459939 B = 3594.995394 C = 5197.608188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.150 3.850 3 H 0.084 0.916 4 C -0.134 4.134 5 C 0.168 3.832 6 H 0.049 0.951 7 C -0.163 4.163 8 N -0.715 5.715 9 C -0.226 4.226 10 H 0.067 0.933 11 C -0.008 4.008 12 N -0.923 5.923 13 Si 0.897 3.103 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.288 1.288 17 N -0.692 5.692 18 C 0.579 3.421 19 O -0.562 6.562 20 C -0.203 4.203 21 C -0.007 4.007 22 C -0.217 4.217 23 C 0.323 3.677 24 O -0.484 6.484 25 N -0.497 5.497 26 C 0.221 3.779 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.035 0.965 35 H 0.376 0.624 36 H 0.262 0.738 37 H 0.403 0.597 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.395 0.605 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.450 1.144 1.428 10.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 H 0.102 0.898 4 C -0.173 4.173 5 C 0.059 3.941 6 H 0.067 0.933 7 C -0.223 4.223 8 N -0.358 5.358 9 C -0.357 4.357 10 H 0.085 0.915 11 C -0.204 4.204 12 N -0.571 5.571 13 Si 0.729 3.271 14 H -0.216 1.216 15 H -0.217 1.217 16 H -0.215 1.215 17 N -0.345 5.345 18 C 0.366 3.634 19 O -0.443 6.443 20 C -0.209 4.209 21 C -0.034 4.034 22 C -0.239 4.239 23 C 0.143 3.857 24 O -0.291 6.291 25 N -0.215 5.215 26 C 0.063 3.937 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.211 0.789 36 H 0.072 0.928 37 H 0.241 0.759 38 H 0.159 0.841 39 H 0.154 0.846 40 H 0.252 0.748 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -9.689 1.322 1.266 9.860 hybrid contribution 0.748 0.210 0.726 1.064 sum -8.941 1.532 1.992 9.287 Atomic orbital electron populations 1.22210 0.96174 1.01694 1.02000 1.20828 0.92546 0.97773 0.84346 0.89764 1.22222 0.97780 1.00658 0.96606 1.20302 0.89713 0.95939 0.88188 0.93340 1.22414 1.01544 1.00357 0.98012 1.42445 1.18656 1.39869 1.34809 1.19157 0.93177 1.12970 1.10368 0.91527 1.24533 0.98319 0.98751 0.98848 1.69387 1.37773 1.23995 1.25903 0.86405 0.84876 0.77559 0.78238 1.21608 1.21707 1.21495 1.45882 1.65624 1.14292 1.08654 1.17744 0.76638 0.86021 0.82974 1.90684 1.52294 1.15678 1.85607 1.20948 1.08265 0.96448 0.95222 1.21454 0.91422 0.99990 0.90489 1.21850 1.06149 0.95232 1.00639 1.19455 0.91466 0.88077 0.86682 1.84745 1.36113 1.71169 1.37078 1.67168 1.13984 1.41187 0.99192 1.22771 0.85910 0.90163 0.94897 0.92068 0.92750 0.92364 0.91674 0.90687 0.92875 0.93578 0.94567 0.78942 0.92798 0.75877 0.84064 0.84642 0.74824 0.81247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.48 37.16 0.35 -1.72 16 2 C 0.15 2.31 2.57 -67.93 -0.17 2.14 16 3 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 4 C -0.13 -1.91 4.43 -26.73 -0.12 -2.03 16 5 C 0.17 3.01 2.89 -67.93 -0.20 2.81 16 6 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 7 C -0.16 -2.71 9.49 37.16 0.35 -2.35 16 8 N -0.72 -15.49 3.84 -53.43 -0.21 -15.70 16 9 C -0.23 -5.76 9.93 -15.06 -0.15 -5.91 16 10 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 12 N -0.92 -24.27 10.70 55.49 0.59 -23.67 16 13 Si 0.90 22.48 29.55 -169.99 -5.02 17.45 16 14 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 15 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 17 N -0.69 -12.06 3.75 -54.83 -0.21 -12.27 16 18 C 0.58 11.39 7.74 -12.43 -0.10 11.29 16 19 O -0.56 -12.18 16.08 5.30 0.09 -12.09 16 20 C -0.20 -3.89 5.89 -104.82 -0.62 -4.51 16 21 C -0.01 -0.13 9.70 -38.92 -0.38 -0.50 16 22 C -0.22 -3.45 10.02 -39.34 -0.39 -3.84 16 23 C 0.32 5.65 7.74 -16.96 -0.13 5.52 16 24 O -0.48 -7.27 13.55 -18.19 -0.25 -7.52 16 25 N -0.50 -9.83 10.37 -12.96 -0.13 -9.96 16 26 C 0.22 4.33 9.02 -17.14 -0.15 4.18 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.38 8.24 5.70 -40.82 -0.23 8.00 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.40 7.00 4.56 -40.82 -0.19 6.81 16 38 H 0.14 2.26 7.73 -52.49 -0.41 1.86 16 39 H 0.14 1.73 8.06 -52.48 -0.42 1.30 16 40 H 0.39 3.53 9.06 45.56 0.41 3.94 16 41 H 0.17 3.36 5.82 -52.48 -0.31 3.05 16 LS Contribution 341.43 15.07 5.15 5.15 Total: -1.00 -30.54 341.43 -6.67 -37.21 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -4.88 Total: 16.65 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -1.80 Total: 4.75 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: 0.05 Total: -61.61 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.16 Total: -19.61 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.54 -6.67 -37.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136074711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.798 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds