Wall clock time and date at job start Tue Mar 31 2020 04:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.46951 * 2 1 4 4 C 1.53006 * 109.46840 * 240.00584 * 2 1 3 5 5 C 1.53000 * 109.46856 * 174.99975 * 4 2 1 6 6 H 1.08994 * 109.47294 * 304.99435 * 5 4 2 7 7 C 1.53009 * 109.46585 * 184.99689 * 5 4 2 8 8 N 1.46496 * 109.47138 * 65.00042 * 5 4 2 9 9 C 1.36935 * 120.00054 * 204.99376 * 8 5 4 10 10 H 1.08002 * 119.99807 * 0.02562 * 9 8 5 11 11 C 1.38812 * 120.00240 * 179.97438 * 9 8 5 12 12 N 1.31619 * 119.99892 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00062 * 180.02562 * 11 9 8 14 14 H 1.48509 * 109.47112 * 60.00411 * 13 11 9 15 15 H 1.48498 * 109.47289 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47386 * 300.00502 * 13 11 9 17 17 N 1.46493 * 109.47185 * 120.00757 * 2 1 3 18 18 C 1.34782 * 119.99714 * 274.99570 * 17 2 1 19 19 O 1.21577 * 120.00081 * 0.02562 * 18 17 2 20 20 C 1.47617 * 119.99834 * 180.02562 * 18 17 2 21 21 C 1.40280 * 120.49669 * 179.97438 * 20 18 17 22 22 C 1.37959 * 118.35668 * 179.72645 * 21 20 18 23 23 C 1.39168 * 119.26338 * 0.25575 * 22 21 20 24 24 O 1.35501 * 119.52593 * 179.97438 * 23 22 21 25 25 N 1.32405 * 120.94757 * 0.02562 * 23 22 21 26 26 C 1.31662 * 121.80146 * 359.97438 * 25 23 22 27 27 H 1.09004 * 109.47504 * 59.99388 * 1 2 3 28 28 H 1.09001 * 109.47500 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47101 * 299.99230 * 1 2 3 30 30 H 1.09007 * 109.46970 * 295.00119 * 4 2 1 31 31 H 1.08996 * 109.47056 * 54.99441 * 4 2 1 32 32 H 1.09004 * 109.46661 * 180.02562 * 7 5 4 33 33 H 1.08994 * 109.47098 * 299.99867 * 7 5 4 34 34 H 1.09002 * 109.46830 * 60.00310 * 7 5 4 35 35 H 0.97001 * 120.00464 * 24.99689 * 8 5 4 36 36 H 0.97004 * 120.00043 * 179.97438 * 12 11 9 37 37 H 0.96996 * 120.00353 * 94.99857 * 17 2 1 38 38 H 1.08002 * 120.82435 * 0.02562 * 21 20 18 39 39 H 1.08003 * 120.37105 * 180.23202 * 22 21 20 40 40 H 0.96699 * 113.99976 * 90.00354 * 24 23 22 41 41 H 1.08007 * 119.68735 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5647 -0.6132 -1.3138 6 1 3.8570 0.4358 -1.2679 7 6 4.0643 -1.2249 -2.6243 8 7 4.1536 -1.3342 -0.1827 9 6 5.3943 -0.9857 0.2803 10 1 5.9385 -0.1790 -0.1882 11 6 5.9521 -1.6685 1.3525 12 7 5.2886 -2.6513 1.9238 13 14 7.6443 -1.1926 1.9845 14 1 7.6255 0.2234 2.4317 15 1 8.0103 -2.0681 3.1268 16 1 8.6425 -1.3551 0.8972 17 7 2.0183 -0.6907 1.1960 18 6 2.1471 -0.0184 2.3571 19 8 1.8576 1.1611 2.4119 20 6 2.6397 -0.7143 3.5621 21 6 2.7783 -0.0246 4.7758 22 6 3.2371 -0.7196 5.8757 23 6 3.5501 -2.0693 5.7456 24 8 4.0017 -2.7569 6.8223 25 7 3.4139 -2.6910 4.5845 26 6 2.9796 -2.0665 3.5098 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.7515 -1.7715 -1.2058 31 1 1.6052 -0.2616 -2.1370 32 1 5.1507 -1.1484 -2.6700 33 1 3.7721 -2.2739 -2.6702 34 1 3.6261 -0.6884 -3.4659 35 1 3.6647 -2.0585 0.2384 36 1 5.6785 -3.1287 2.6728 37 1 2.2490 -1.6318 1.1524 38 1 2.5273 1.0233 4.8486 39 1 3.3525 -0.2216 6.8271 40 1 3.3022 -3.1697 7.3471 41 1 2.8811 -2.6072 2.5801 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136074711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:45 Heat of formation + Delta-G solvation = -49.746594 kcal Electronic energy + Delta-G solvation = -24756.135416 eV Core-core repulsion = 21249.970459 eV Total energy + Delta-G solvation = -3506.164957 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.61508 -40.38118 -38.37617 -37.78812 -35.78639 -34.10192 -33.42873 -32.54802 -30.89370 -30.01126 -27.56737 -25.56223 -25.29261 -24.53396 -22.54065 -21.70674 -21.20456 -19.78008 -19.07994 -18.70101 -17.94611 -16.93682 -16.83963 -16.52229 -16.02375 -15.71840 -15.49171 -15.38116 -14.98273 -14.33305 -14.22355 -14.12339 -13.85323 -13.58681 -13.53509 -13.28087 -13.15588 -12.89669 -12.78224 -12.76237 -12.61603 -12.26915 -12.20312 -11.68626 -11.59375 -11.38772 -11.01848 -10.90912 -10.84999 -10.26328 -9.97982 -9.72364 -8.78353 -7.84089 -5.03845 -0.30786 0.33524 1.40147 1.44561 1.46967 1.92337 2.39328 2.58512 2.70119 2.92498 3.50397 3.68152 3.86519 3.92928 4.00004 4.04369 4.16853 4.21206 4.38113 4.43249 4.60493 4.71671 4.77422 4.87120 4.90766 4.94079 4.96501 5.10310 5.15261 5.17373 5.21763 5.40859 5.45155 5.55902 5.62574 5.66098 5.77555 6.37001 6.65987 6.68651 7.01253 7.35270 7.47410 8.18990 8.46017 9.34187 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.007787 C = 0.005386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.459939 B = 3594.995394 C = 5197.608188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.145 3.855 3 H 0.059 0.941 4 C -0.120 4.120 5 C 0.161 3.839 6 H 0.030 0.970 7 C -0.154 4.154 8 N -0.718 5.718 9 C -0.224 4.224 10 H 0.055 0.945 11 C -0.045 4.045 12 N -0.923 5.923 13 Si 0.930 3.070 14 H -0.298 1.298 15 H -0.305 1.305 16 H -0.285 1.285 17 N -0.686 5.686 18 C 0.572 3.428 19 O -0.590 6.590 20 C -0.221 4.221 21 C -0.014 4.014 22 C -0.202 4.202 23 C 0.320 3.680 24 O -0.489 6.489 25 N -0.525 5.525 26 C 0.219 3.781 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.027 0.973 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.374 0.626 36 H 0.248 0.752 37 H 0.403 0.597 38 H 0.153 0.847 39 H 0.173 0.827 40 H 0.421 0.579 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.799 1.208 1.102 11.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.041 3.959 3 H 0.078 0.922 4 C -0.158 4.158 5 C 0.053 3.947 6 H 0.048 0.952 7 C -0.213 4.213 8 N -0.361 5.361 9 C -0.356 4.356 10 H 0.073 0.927 11 C -0.239 4.239 12 N -0.572 5.572 13 Si 0.763 3.237 14 H -0.225 1.225 15 H -0.232 1.232 16 H -0.212 1.212 17 N -0.337 5.337 18 C 0.360 3.640 19 O -0.473 6.473 20 C -0.226 4.226 21 C -0.040 4.040 22 C -0.223 4.223 23 C 0.141 3.859 24 O -0.300 6.300 25 N -0.244 5.244 26 C 0.060 3.940 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.129 0.871 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.209 0.791 36 H 0.057 0.943 37 H 0.242 0.758 38 H 0.171 0.829 39 H 0.190 0.810 40 H 0.283 0.717 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -11.073 1.375 0.925 11.197 hybrid contribution 1.144 0.206 0.889 1.463 sum -9.930 1.580 1.814 10.217 Atomic orbital electron populations 1.22111 0.93624 1.02815 1.02456 1.21008 0.94485 0.96380 0.84064 0.92244 1.22143 0.94735 1.01662 0.97302 1.20514 0.92221 0.94479 0.87534 0.95170 1.22269 0.99995 1.00844 0.98220 1.42479 1.17575 1.40102 1.35900 1.19188 0.94473 1.12073 1.09881 0.92719 1.24857 0.99617 0.99655 0.99815 1.69484 1.37625 1.24424 1.25714 0.85886 0.84034 0.76350 0.77397 1.22546 1.23187 1.21226 1.45956 1.64724 1.14214 1.08775 1.17936 0.76499 0.85803 0.83747 1.90654 1.53830 1.16667 1.86124 1.21063 1.09129 0.96523 0.95934 1.21708 0.91318 1.00628 0.90328 1.22164 1.04090 0.94467 1.01609 1.19718 0.90633 0.88934 0.86652 1.84689 1.37571 1.71264 1.36459 1.67133 1.15023 1.42191 1.00067 1.22580 0.86317 0.90255 0.94814 0.89423 0.91248 0.94107 0.90398 0.87111 0.95401 0.93309 0.91249 0.79112 0.94279 0.75845 0.82934 0.80964 0.71716 0.82232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.48 71.98 0.68 -2.84 16 2 C 0.14 4.27 2.57 44.99 0.12 4.39 16 3 H 0.06 2.07 7.58 -2.39 -0.02 2.05 16 4 C -0.12 -3.10 4.43 30.60 0.14 -2.96 16 5 C 0.16 5.56 2.89 45.00 0.13 5.69 16 6 H 0.03 1.16 8.08 -2.39 -0.02 1.14 16 7 C -0.15 -4.79 9.49 71.99 0.68 -4.10 16 8 N -0.72 -31.00 3.84 -322.94 -1.24 -32.25 16 9 C -0.22 -11.53 9.93 84.03 0.83 -10.69 16 10 H 0.05 2.91 7.83 -2.91 -0.02 2.88 16 11 C -0.04 -2.39 5.50 84.86 0.47 -1.92 16 12 N -0.92 -49.20 10.70 21.65 0.23 -48.97 16 13 Si 0.93 46.72 29.55 68.60 2.03 48.74 16 14 H -0.30 -15.21 7.11 99.48 0.71 -14.51 16 15 H -0.30 -15.92 7.11 99.48 0.71 -15.21 16 16 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 17 N -0.69 -23.77 3.75 -445.63 -1.67 -25.45 16 18 C 0.57 22.74 7.74 86.72 0.67 23.41 16 19 O -0.59 -25.84 16.08 -3.96 -0.06 -25.90 16 20 C -0.22 -8.51 5.89 -19.99 -0.12 -8.63 16 21 C -0.01 -0.46 9.70 22.70 0.22 -0.24 16 22 C -0.20 -6.02 10.02 22.43 0.22 -5.80 16 23 C 0.32 10.77 7.74 84.83 0.66 11.43 16 24 O -0.49 -13.68 13.55 -88.02 -1.19 -14.87 16 25 N -0.53 -20.69 10.37 -307.81 -3.19 -23.89 16 26 C 0.22 8.64 9.02 85.03 0.77 9.41 16 27 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.03 0.98 8.14 -2.38 -0.02 0.97 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.37 16.35 5.70 -92.71 -0.53 15.82 16 36 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 37 H 0.40 13.99 4.56 -92.71 -0.42 13.57 16 38 H 0.15 4.74 7.73 -2.91 -0.02 4.72 16 39 H 0.17 3.78 8.06 -2.91 -0.02 3.76 16 40 H 0.42 6.49 9.06 -74.06 -0.67 5.82 16 41 H 0.16 6.49 5.82 -2.91 -0.02 6.47 16 Total: -1.00 -66.84 341.43 -0.18 -67.03 By element: Atomic # 1 Polarization: 38.95 SS G_CDS: -0.55 Total: 38.40 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 5.47 Total: 17.14 kcal Atomic # 7 Polarization: -124.67 SS G_CDS: -5.87 Total: -130.54 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: -1.26 Total: -40.77 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Total: -66.84 -0.18 -67.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136074711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.280 kcal (2) G-P(sol) polarization free energy of solvation -66.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds