Wall clock time and date at job start Tue Mar 31 2020 03:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34868 * 119.10499 * 2 1 4 4 C 1.41665 * 119.34325 * 180.02562 * 3 2 1 5 5 O 1.22087 * 121.06903 * 179.97438 * 4 3 2 6 6 C 1.47102 * 117.86021 * 0.27704 * 4 3 2 7 7 C 1.47288 * 120.88302 * 179.71828 * 6 4 3 8 8 O 1.21626 * 119.99842 * 0.02562 * 7 6 4 9 9 N 1.34770 * 120.00399 * 179.97438 * 7 6 4 10 10 C 1.46506 * 120.00249 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46934 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46807 * 179.97438 * 11 10 9 13 13 N 1.46503 * 109.46752 * 179.97438 * 12 11 10 14 14 C 1.36939 * 119.99473 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00310 * 0.02562 * 14 13 12 16 16 C 1.38816 * 119.99684 * 180.02562 * 14 13 12 17 17 N 1.31616 * 120.00293 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99922 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47228 * 59.99594 * 18 16 14 20 20 H 1.48501 * 109.47120 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47266 * 299.99748 * 18 16 14 22 22 C 1.37991 * 118.23577 * 359.45000 * 6 4 3 23 23 N 1.34346 * 120.37285 * 0.56018 * 22 6 4 24 24 C 1.46493 * 118.80393 * 179.68391 * 23 22 6 25 25 H 1.08997 * 109.47652 * 95.91952 * 1 2 3 26 26 H 1.08999 * 109.47228 * 215.92693 * 1 2 3 27 27 H 1.09005 * 109.46896 * 335.92033 * 1 2 3 28 28 H 1.08002 * 120.32530 * 0.04932 * 3 2 1 29 29 H 0.97005 * 119.99994 * 0.02562 * 9 7 6 30 30 H 1.08997 * 109.46906 * 300.00366 * 10 9 7 31 31 H 1.08998 * 109.46881 * 60.00637 * 10 9 7 32 32 H 1.08997 * 109.47482 * 299.99841 * 11 10 9 33 33 H 1.09002 * 109.47242 * 60.00113 * 11 10 9 34 34 H 1.08997 * 109.47063 * 300.00213 * 12 11 10 35 35 H 1.08998 * 109.46850 * 60.00560 * 12 11 10 36 36 H 0.96996 * 120.00449 * 0.02562 * 13 12 11 37 37 H 0.97000 * 120.00516 * 180.02562 * 17 16 14 38 38 H 1.08000 * 119.81532 * 180.24667 * 22 6 4 39 39 H 1.09007 * 109.46903 * 264.04928 * 24 23 22 40 40 H 1.08992 * 109.47802 * 24.05219 * 24 23 22 41 41 H 1.09002 * 109.47110 * 144.05927 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1630 1.1784 0.0000 4 6 3.5796 1.1843 -0.0006 5 8 4.2053 2.2326 -0.0010 6 6 4.2724 -0.1134 -0.0074 7 6 5.7436 -0.1849 -0.0146 8 8 6.4021 0.8377 -0.0144 9 7 6.3600 -1.3833 -0.0203 10 6 7.8233 -1.4544 -0.0268 11 6 8.2626 -2.9200 -0.0331 12 6 9.7908 -2.9942 -0.0406 13 7 10.2115 -4.3975 -0.0459 14 6 11.5441 -4.7128 -0.0525 15 1 12.2849 -3.9269 -0.0534 16 6 11.9427 -6.0424 -0.0581 17 7 11.0399 -7.0002 -0.0566 18 14 13.7605 -6.4725 -0.0664 19 1 14.4081 -5.9089 1.1453 20 1 13.9198 -7.9489 -0.0709 21 1 14.3987 -5.9016 -1.2797 22 6 3.5075 -1.2618 -0.0012 23 7 2.1663 -1.1847 -0.0006 24 6 1.3880 -2.4258 -0.0010 25 1 -0.3634 -0.1060 -1.0221 26 1 -0.3633 -0.8322 0.6030 27 1 -0.3633 0.9383 0.4193 28 1 1.6137 2.1083 0.0008 29 1 5.8348 -2.1989 -0.0200 30 1 8.2072 -0.9566 -0.9172 31 1 8.2150 -0.9612 0.8627 32 1 7.8787 -3.4182 0.8571 33 1 7.8709 -3.4130 -0.9228 34 1 10.1744 -2.4961 -0.9310 35 1 10.1829 -2.5012 0.8490 36 1 9.5462 -5.1034 -0.0448 37 1 11.3184 -7.9293 -0.0601 38 1 3.9898 -2.2282 -0.0020 39 1 1.1042 -2.6763 -1.0233 40 1 1.9900 -3.2325 0.4170 41 1 0.4903 -2.2919 0.6026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160473578.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:48 Heat of formation + Delta-G solvation = -24.096167 kcal Electronic energy + Delta-G solvation = -22322.268667 eV Core-core repulsion = 18817.215996 eV Total energy + Delta-G solvation = -3505.052671 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 3.39 seconds Orbital eigenvalues (eV) -41.55975 -39.34054 -37.94448 -35.87525 -34.35976 -33.82653 -33.00461 -31.80622 -29.73214 -28.41534 -27.32840 -25.30063 -24.42973 -22.80976 -21.77799 -21.19822 -20.55602 -18.37906 -17.90495 -17.01974 -16.52839 -16.49892 -16.02517 -15.56568 -15.50366 -14.76313 -14.50246 -14.38816 -13.99868 -13.85886 -13.67019 -13.52649 -13.37050 -13.25823 -12.93981 -12.86527 -12.42658 -12.34059 -12.24115 -11.59546 -10.93022 -10.89487 -10.77379 -10.58753 -10.12518 -9.98578 -9.86241 -9.70742 -9.28465 -8.95032 -8.86643 -8.23968 -6.92928 -5.77090 -3.05600 0.54802 0.98160 1.93434 2.94502 3.17791 3.45480 3.49189 3.50789 3.63951 3.72158 3.98752 4.10174 4.30440 4.40097 4.59553 4.63452 4.71910 4.74376 4.81993 4.98720 5.16629 5.20371 5.35890 5.36220 5.43326 5.58456 5.66968 5.97589 6.09358 6.11964 6.18472 6.22640 6.34559 6.39871 6.55811 6.81859 6.86013 7.58667 7.70803 7.99333 8.40253 8.42313 9.53285 10.10436 10.45296 11.46018 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028641 B = 0.002392 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.378825 B =11700.970143 C =12641.987265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.154 3.846 3 C -0.268 4.268 4 C 0.407 3.593 5 O -0.479 6.479 6 C -0.297 4.297 7 C 0.569 3.431 8 O -0.512 6.512 9 N -0.733 5.733 10 C 0.124 3.876 11 C -0.136 4.136 12 C 0.155 3.845 13 N -0.734 5.734 14 C -0.239 4.239 15 H 0.071 0.929 16 C -0.016 4.016 17 N -0.936 5.936 18 Si 0.909 3.091 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.173 3.827 23 N -0.472 5.472 24 C 0.047 3.953 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.152 0.848 29 H 0.391 0.609 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.168 0.832 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.471 7.907 0.188 30.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.048 3.952 3 C -0.292 4.292 4 C 0.292 3.708 5 O -0.360 6.360 6 C -0.308 4.308 7 C 0.355 3.645 8 O -0.386 6.386 9 N -0.386 5.386 10 C 0.001 3.999 11 C -0.175 4.175 12 C 0.027 3.973 13 N -0.378 5.378 14 C -0.370 4.370 15 H 0.089 0.911 16 C -0.211 4.211 17 N -0.585 5.585 18 Si 0.740 3.260 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 C 0.043 3.957 23 N -0.159 5.159 24 C -0.094 4.094 25 H 0.107 0.893 26 H 0.099 0.901 27 H 0.111 0.889 28 H 0.170 0.830 29 H 0.225 0.775 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.216 0.784 37 H 0.065 0.935 38 H 0.185 0.815 39 H 0.102 0.898 40 H 0.114 0.886 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -28.574 9.090 0.188 29.986 hybrid contribution 0.474 -1.258 -0.019 1.344 sum -28.100 7.832 0.169 29.172 Atomic orbital electron populations 1.21190 0.88024 1.05083 1.04138 1.20273 0.94883 0.84974 0.95058 1.22294 0.96321 0.97218 1.13392 1.18157 0.88240 0.87910 0.76451 1.90833 1.69924 1.33215 1.41987 1.22579 0.94425 0.95163 1.18597 1.17489 0.86107 0.83662 0.77207 1.90863 1.65852 1.33936 1.47969 1.45989 1.08197 1.07543 1.76915 1.21339 0.78348 0.97567 1.02651 1.21938 0.98777 0.94252 1.02490 1.20533 0.90090 0.88326 0.98330 1.42330 1.05147 1.00692 1.89640 1.19221 0.83716 0.91537 1.42522 0.91110 1.24747 0.97689 0.95635 1.03061 1.69645 1.31902 0.98999 1.57983 0.86233 0.84846 0.76994 0.77931 1.21220 1.21697 1.21214 1.22251 0.82176 0.99967 0.91352 1.42562 1.05292 1.07276 1.60734 1.22572 0.97901 0.84320 1.04612 0.89296 0.90084 0.88854 0.83023 0.77504 0.91283 0.91275 0.91401 0.91404 0.95948 0.95952 0.78362 0.93500 0.81488 0.89826 0.88615 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.19 9.34 36.00 0.34 0.15 16 2 C 0.15 0.86 6.64 -82.13 -0.55 0.31 16 3 C -0.27 -2.53 9.57 -39.47 -0.38 -2.91 16 4 C 0.41 5.95 6.96 -34.68 -0.24 5.71 16 5 O -0.48 -9.50 16.41 -15.17 -0.25 -9.75 16 6 C -0.30 -3.70 6.05 -102.71 -0.62 -4.32 16 7 C 0.57 8.89 7.77 -12.58 -0.10 8.79 16 8 O -0.51 -10.73 15.57 -14.76 -0.23 -10.96 16 9 N -0.73 -9.18 5.51 -61.43 -0.34 -9.52 16 10 C 0.12 1.82 5.67 -4.04 -0.02 1.79 16 11 C -0.14 -2.09 5.44 -26.73 -0.15 -2.24 16 12 C 0.16 3.15 6.26 -4.04 -0.03 3.12 16 13 N -0.73 -18.76 5.60 -59.91 -0.34 -19.09 16 14 C -0.24 -6.79 9.99 -15.06 -0.15 -6.95 16 15 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 16 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 17 N -0.94 -28.31 13.06 55.49 0.72 -27.58 16 18 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 C 0.17 1.19 9.80 -16.54 -0.16 1.02 16 23 N -0.47 -2.19 2.97 -119.75 -0.36 -2.54 16 24 C 0.05 0.01 9.98 59.84 0.60 0.61 16 25 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 26 H 0.08 -0.03 6.00 -51.93 -0.31 -0.34 16 27 H 0.09 0.10 7.97 -51.93 -0.41 -0.31 16 28 H 0.15 1.22 8.01 -52.49 -0.42 0.80 16 29 H 0.39 3.39 6.55 -40.82 -0.27 3.12 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.38 10.08 7.67 -40.82 -0.31 9.77 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.17 0.56 6.28 -52.49 -0.33 0.23 16 39 H 0.08 -0.06 8.14 -51.92 -0.42 -0.48 16 40 H 0.10 -0.09 7.86 -51.93 -0.41 -0.50 16 41 H 0.09 -0.12 5.94 -51.93 -0.31 -0.43 16 LS Contribution 346.53 15.07 5.22 5.22 Total: -1.00 -41.59 346.53 -7.84 -49.43 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -5.70 Total: 2.68 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -1.55 Total: 4.54 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -0.31 Total: -58.74 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.48 Total: -20.71 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -41.59 -7.84 -49.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160473578.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.330 kcal (2) G-P(sol) polarization free energy of solvation -41.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.39 seconds