Wall clock time and date at job start Tue Mar 31 2020 04:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47497 * 42.84951 * 3 2 1 5 5 C 1.34775 * 120.00178 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99925 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.00069 * 179.97438 * 5 4 3 8 8 C 1.50700 * 109.47148 * 180.02562 * 7 5 4 9 9 O 1.21283 * 119.99803 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99675 * 180.28037 * 8 7 5 11 11 C 1.46927 * 120.63303 * 359.72079 * 10 8 7 12 12 C 1.53191 * 108.77356 * 233.58945 * 11 10 8 13 13 C 1.53040 * 109.31454 * 305.36260 * 12 11 10 14 14 C 1.53039 * 109.53579 * 61.36967 * 13 12 11 15 15 H 1.09003 * 109.50044 * 58.61656 * 14 13 12 16 16 N 1.46500 * 109.49879 * 178.68494 * 14 13 12 17 17 C 1.36942 * 119.99702 * 205.00309 * 16 14 13 18 18 H 1.07989 * 120.00303 * 359.97438 * 17 16 14 19 19 C 1.38818 * 119.99361 * 179.97438 * 17 16 14 20 20 N 1.31613 * 120.00256 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99577 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46843 * 90.00186 * 21 19 17 23 23 H 1.48500 * 109.47016 * 210.00045 * 21 19 17 24 24 H 1.48496 * 109.47042 * 330.00120 * 21 19 17 25 25 C 1.46925 * 120.62614 * 179.44850 * 10 8 7 26 26 H 4.40639 * 5.51386 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.47684 * 282.84701 * 3 2 1 28 28 H 1.09006 * 109.46536 * 162.84819 * 3 2 1 29 29 H 0.97002 * 119.99772 * 0.02562 * 4 3 2 30 30 H 1.09009 * 109.46601 * 60.00324 * 7 5 4 31 31 H 1.08998 * 109.47035 * 300.00831 * 7 5 4 32 32 H 1.08996 * 109.58591 * 353.37927 * 11 10 8 33 33 H 1.09005 * 109.58402 * 113.80121 * 11 10 8 34 34 H 1.08993 * 109.49844 * 65.32135 * 12 11 10 35 35 H 1.09000 * 109.49122 * 185.38265 * 12 11 10 36 36 H 1.08996 * 109.45698 * 181.38881 * 13 12 11 37 37 H 1.08999 * 109.45819 * 301.36516 * 13 12 11 38 38 H 0.96993 * 119.99858 * 24.99431 * 16 14 13 39 39 H 0.96999 * 120.00159 * 180.02562 * 20 19 17 40 40 H 1.09005 * 109.58329 * 246.19991 * 25 10 8 41 41 H 1.09000 * 109.58776 * 6.62153 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -1.0117 -0.9393 5 6 4.4600 -1.1913 -1.1071 6 8 5.2477 -0.5151 -0.4802 7 6 4.9628 -2.2331 -2.0730 8 6 6.4698 -2.2323 -2.0730 9 8 7.0758 -1.4619 -1.3587 10 7 7.1441 -3.0842 -2.8707 11 6 6.4240 -4.0236 -3.7411 12 6 6.9381 -5.4408 -3.4691 13 6 8.4591 -5.4683 -3.6368 14 6 9.1028 -4.5184 -2.6242 15 1 8.8237 -4.8195 -1.6144 16 7 10.5602 -4.5690 -2.7643 17 6 11.3618 -4.2432 -1.7028 18 1 10.9196 -3.9486 -0.7627 19 6 12.7428 -4.2917 -1.8355 20 7 13.2817 -4.6502 -2.9815 21 14 13.8362 -3.8465 -0.3878 22 1 14.1191 -5.0653 0.4120 23 1 15.1125 -3.2758 -0.8886 24 1 13.1464 -2.8446 0.4639 25 6 8.6132 -3.0869 -2.8906 26 1 -1.0498 -0.0003 -0.0001 27 1 3.0095 -0.2277 1.0019 28 1 3.0087 0.9829 -0.3031 29 1 2.5047 -1.5523 -1.4410 30 1 4.5989 -2.0053 -3.0750 31 1 4.6003 -3.2152 -1.7693 32 1 5.3563 -3.9749 -3.5272 33 1 6.6018 -3.7643 -4.7848 34 1 6.6789 -5.7328 -2.4515 35 1 6.4813 -6.1350 -4.1744 36 1 8.8247 -6.4812 -3.4679 37 1 8.7188 -5.1521 -4.6471 38 1 10.9574 -4.8334 -3.6088 39 1 14.2466 -4.6845 -3.0740 40 1 8.9659 -2.7527 -3.8664 41 1 8.9904 -2.4199 -2.1154 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207870254.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:13 Heat of formation + Delta-G solvation = -26.202480 kcal Electronic energy + Delta-G solvation = -23061.315923 eV Core-core repulsion = 19556.171916 eV Total energy + Delta-G solvation = -3505.144007 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.52684 -40.24763 -38.46947 -36.44671 -36.15237 -34.02941 -33.57354 -32.67960 -31.83703 -29.79376 -27.87731 -26.05624 -25.85700 -23.20258 -22.30583 -21.41699 -20.19215 -19.35435 -19.09557 -18.54650 -17.43252 -17.11715 -16.96873 -16.66110 -16.28816 -16.03455 -15.53924 -15.41071 -15.23144 -14.71587 -14.61641 -14.50941 -14.21443 -13.89859 -13.83923 -13.60693 -13.08963 -12.90474 -12.89577 -12.47720 -12.24103 -12.01987 -11.84556 -11.80206 -11.63508 -11.45118 -11.31841 -11.11633 -10.97741 -10.46580 -10.11904 -9.66415 -8.99917 -8.00567 -5.29180 1.37148 1.41958 1.43666 1.52870 1.61136 1.75170 1.85068 2.01594 2.51271 2.61732 3.32398 3.37016 3.43292 3.78482 3.88829 4.05935 4.13385 4.24798 4.35869 4.38395 4.41198 4.42890 4.50559 4.58283 4.69999 4.83372 4.92955 4.97016 5.01635 5.11125 5.20467 5.32391 5.41241 5.44672 5.52795 5.64458 6.22988 6.49725 6.57797 6.59819 7.23190 7.29214 7.39060 8.02541 8.27355 9.21995 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021889 B = 0.003110 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.865053 B = 9000.678674 C =10031.719581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.247 4.247 3 C 0.231 3.769 4 N -0.714 5.714 5 C 0.508 3.492 6 O -0.555 6.555 7 C -0.146 4.146 8 C 0.496 3.504 9 O -0.569 6.569 10 N -0.608 5.608 11 C 0.099 3.901 12 C -0.122 4.122 13 C -0.119 4.119 14 C 0.166 3.834 15 H 0.029 0.971 16 N -0.730 5.730 17 C -0.245 4.245 18 H 0.062 0.938 19 C -0.068 4.068 20 N -0.963 5.963 21 Si 0.967 3.033 22 H -0.281 1.281 23 H -0.289 1.289 24 H -0.281 1.281 25 C 0.109 3.891 26 H 0.255 0.745 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.421 0.579 30 H 0.170 0.830 31 H 0.167 0.833 32 H 0.131 0.869 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.113 0.887 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.377 0.623 39 H 0.253 0.747 40 H 0.056 0.944 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.587 0.796 -3.400 31.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.248 4.248 3 C 0.108 3.892 4 N -0.370 5.370 5 C 0.294 3.706 6 O -0.431 6.431 7 C -0.187 4.187 8 C 0.284 3.716 9 O -0.446 6.446 10 N -0.342 5.342 11 C -0.022 4.022 12 C -0.161 4.161 13 C -0.157 4.157 14 C 0.057 3.943 15 H 0.047 0.953 16 N -0.370 5.370 17 C -0.377 4.377 18 H 0.080 0.920 19 C -0.261 4.261 20 N -0.613 5.613 21 Si 0.796 3.204 22 H -0.208 1.208 23 H -0.216 1.216 24 H -0.206 1.206 25 C -0.017 4.017 26 H 0.272 0.728 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.258 0.742 30 H 0.187 0.813 31 H 0.184 0.816 32 H 0.149 0.851 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.131 0.869 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.210 0.790 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -30.608 1.742 -2.391 30.751 hybrid contribution 1.289 0.219 0.470 1.390 sum -29.319 1.961 -1.921 29.447 Atomic orbital electron populations 1.25844 0.96595 0.96692 0.96959 1.22872 0.94242 1.03903 1.03758 1.17880 0.84141 0.92921 0.94278 1.45771 1.06349 1.39925 1.44944 1.20642 0.82141 0.84498 0.83325 1.90899 1.56131 1.48010 1.48074 1.21680 0.90993 1.02382 1.03690 1.20981 0.91170 0.80069 0.79419 1.90853 1.71071 1.40775 1.41930 1.48340 1.06062 1.37465 1.42356 1.22211 0.98066 0.87427 0.94458 1.21897 0.93300 0.97381 1.03487 1.21751 0.96936 0.98601 0.98461 1.20776 0.83164 0.92844 0.97552 0.95253 1.42523 1.00775 1.80941 1.12810 1.19488 0.88799 1.36916 0.92447 0.92044 1.25473 0.97928 1.03069 0.99646 1.69780 1.10403 1.55816 1.25264 0.85242 0.78323 0.77843 0.78998 1.20814 1.21556 1.20619 1.22200 0.79590 0.99723 1.00212 0.72848 0.90249 0.90127 0.74175 0.81293 0.81561 0.85098 0.89725 0.91656 0.86865 0.92314 0.91577 0.79003 0.93793 0.92574 0.94305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 19.25 74.32 1.43 0.22 16 2 C -0.25 -3.26 13.46 31.12 0.42 -2.84 16 3 C 0.23 3.87 6.15 84.57 0.52 4.39 16 4 N -0.71 -10.41 5.54 -472.13 -2.61 -13.02 16 5 C 0.51 11.75 7.82 87.66 0.69 12.43 16 6 O -0.56 -20.91 14.18 20.40 0.29 -20.62 16 7 C -0.15 -2.26 4.53 29.10 0.13 -2.13 16 8 C 0.50 15.38 7.69 87.66 0.67 16.05 16 9 O -0.57 -26.08 13.59 20.40 0.28 -25.81 16 10 N -0.61 -17.29 2.97 -818.05 -2.43 -19.71 16 11 C 0.10 1.52 6.34 86.36 0.55 2.07 16 12 C -0.12 -2.15 6.08 30.67 0.19 -1.96 16 13 C -0.12 -3.48 5.35 30.62 0.16 -3.31 16 14 C 0.17 6.81 2.94 45.22 0.13 6.94 16 15 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 16 N -0.73 -38.19 5.12 -321.87 -1.65 -39.84 16 17 C -0.24 -14.47 9.93 84.03 0.83 -13.64 16 18 H 0.06 3.68 7.83 -2.92 -0.02 3.66 16 19 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 20 N -0.96 -60.01 13.06 21.65 0.28 -59.73 16 21 Si 0.97 48.91 29.55 68.60 2.03 50.94 16 22 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 23 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 24 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 25 C 0.11 4.35 6.05 86.51 0.52 4.87 16 26 H 0.26 0.02 7.80 -4.43 -0.03 -0.01 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.42 2.72 8.45 -92.71 -0.78 1.94 16 30 H 0.17 1.00 7.94 -2.38 -0.02 0.98 16 31 H 0.17 1.11 7.69 -2.39 -0.02 1.09 16 32 H 0.13 0.67 5.94 -2.39 -0.01 0.66 16 33 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 35 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.38 20.57 7.80 -92.71 -0.72 19.84 16 39 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 40 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 41 H 0.04 1.93 7.00 -2.39 -0.02 1.92 16 Total: -1.00 -92.81 348.40 2.45 -90.36 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -0.46 Total: 17.99 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 6.72 Total: 19.45 kcal Atomic # 7 Polarization: -125.90 SS G_CDS: -6.41 Total: -132.30 kcal Atomic # 8 Polarization: -46.99 SS G_CDS: 0.57 Total: -46.43 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 2.03 Total: 50.94 kcal Total: -92.81 2.45 -90.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207870254.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.157 kcal (2) G-P(sol) polarization free energy of solvation -92.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds