Wall clock time and date at job start Tue Mar 31 2020 03:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41380 * 126.80082 * 2 1 4 4 C 1.35448 * 103.98476 * 179.97438 * 3 2 1 5 5 C 1.50705 * 126.77599 * 179.97438 * 4 3 2 6 6 C 1.50693 * 115.55328 * 295.44887 * 5 4 3 7 7 O 1.21279 * 120.00396 * 115.55800 * 6 5 4 8 8 N 1.34782 * 119.99801 * 295.82742 * 6 5 4 9 9 C 1.46502 * 119.99947 * 354.27805 * 8 6 5 10 10 C 1.46496 * 119.99935 * 174.27208 * 8 6 5 11 11 C 1.53005 * 109.46739 * 90.00691 * 10 8 6 12 12 N 1.46510 * 109.46626 * 180.02562 * 11 10 8 13 13 C 1.36939 * 119.99452 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00287 * 0.02562 * 13 12 11 15 15 C 1.38810 * 119.99618 * 179.97438 * 13 12 11 16 16 N 1.31619 * 120.00190 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99738 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47142 * 60.00409 * 17 15 13 19 19 H 1.48507 * 109.47228 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47219 * 300.00000 * 17 15 13 21 21 C 1.53001 * 117.49400 * 81.11873 * 5 4 3 22 22 C 1.53009 * 117.49581 * 149.77431 * 5 4 3 23 23 O 1.34038 * 106.44631 * 0.23508 * 4 3 2 24 24 N 1.20918 * 111.56562 * 359.57116 * 23 4 3 25 25 H 1.09001 * 109.46999 * 90.00484 * 1 2 3 26 26 H 1.08997 * 109.47395 * 210.00537 * 1 2 3 27 27 H 1.09001 * 109.47109 * 330.00855 * 1 2 3 28 28 H 1.08004 * 128.01122 * 359.95212 * 3 2 1 29 29 H 1.09000 * 109.47265 * 89.34757 * 9 8 6 30 30 H 1.09003 * 109.46880 * 209.35257 * 9 8 6 31 31 H 1.09002 * 109.46927 * 329.35214 * 9 8 6 32 32 H 1.09004 * 109.47167 * 210.00289 * 10 8 6 33 33 H 1.09001 * 109.47671 * 330.00180 * 10 8 6 34 34 H 1.08995 * 109.47040 * 299.99507 * 11 10 8 35 35 H 1.08994 * 109.47689 * 59.99998 * 11 10 8 36 36 H 0.96993 * 120.00303 * 359.97438 * 12 11 10 37 37 H 0.96993 * 120.00036 * 180.02562 * 16 15 13 38 38 H 1.09000 * 117.49836 * 214.99938 * 21 5 4 39 39 H 1.08995 * 117.50143 * 0.02562 * 21 5 4 40 40 H 1.09002 * 117.49706 * 359.97438 * 22 5 4 41 41 H 1.09001 * 117.49527 * 145.00035 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6068 0.0006 5 6 4.9022 1.3696 0.0003 6 6 5.1673 2.2016 -1.2278 7 8 5.2359 3.4092 -1.1391 8 7 5.3228 1.6041 -2.4259 9 6 5.3594 0.1423 -2.5162 10 6 5.4551 2.4164 -3.6379 11 6 6.9331 2.7242 -3.8866 12 7 7.0653 3.5371 -5.0983 13 6 8.3043 3.9378 -5.5220 14 1 9.1840 3.6544 -4.9631 15 6 8.4297 4.7075 -6.6703 16 7 7.3577 5.0526 -7.3516 17 14 10.1198 5.2548 -7.2479 18 1 10.9595 4.0613 -7.5226 19 1 9.9824 6.0590 -8.4888 20 1 10.7609 6.0789 -6.1919 21 6 5.4051 1.9088 1.3410 22 6 6.1049 0.7162 0.6842 23 8 3.4537 -0.7253 -0.0044 24 7 2.2869 -1.0422 0.0006 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5137 28 1 2.0710 2.1744 -0.0007 29 1 4.3471 -0.2389 -2.6504 30 1 5.9749 -0.1539 -3.3656 31 1 5.7834 -0.2678 -1.5995 32 1 5.0500 1.8684 -4.4886 33 1 4.9058 3.3494 -3.5118 34 1 7.3382 3.2722 -3.0359 35 1 7.4824 1.7913 -4.0127 36 1 6.2754 3.7913 -5.6004 37 1 7.4454 5.5901 -8.1542 38 1 5.9277 2.8653 1.3346 39 1 4.7961 1.7114 2.2231 40 1 5.9559 -0.2651 1.1347 41 1 7.0879 0.8882 0.2457 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691444900.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:14 Heat of formation + Delta-G solvation = 73.228499 kcal Electronic energy + Delta-G solvation = -23498.736681 eV Core-core repulsion = 19997.904324 eV Total energy + Delta-G solvation = -3500.832357 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -45.19790 -40.33764 -37.17879 -35.89769 -35.03927 -34.31607 -31.75041 -31.36699 -28.97552 -28.43658 -26.73690 -25.01792 -23.62814 -23.37198 -22.59934 -21.65497 -20.62914 -18.99840 -17.89235 -17.82397 -17.17569 -16.64700 -16.03022 -15.66572 -14.99793 -14.59022 -14.39864 -13.99181 -13.67262 -13.59902 -13.45928 -13.28420 -13.19604 -12.97821 -12.83776 -12.65857 -12.31130 -11.93920 -11.72189 -11.34800 -11.20892 -11.00624 -10.88860 -10.84598 -10.66570 -10.26655 -10.14907 -10.05085 -9.73523 -9.41681 -8.86138 -8.57585 -6.92834 -5.75202 -3.04619 1.13053 1.94749 2.19545 2.78385 3.03976 3.30806 3.45820 3.49756 3.51200 3.90950 4.04795 4.22568 4.43372 4.50272 4.62414 4.77074 4.94613 5.10866 5.15617 5.18696 5.26384 5.27707 5.35054 5.42623 5.48266 5.50726 5.56816 5.64288 5.67564 5.76808 5.81104 5.83382 6.01035 6.09523 6.50844 6.71908 6.88563 7.38967 7.70563 7.99026 8.12973 8.43231 9.54061 10.09909 10.45028 11.47693 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026981 B = 0.003156 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.531502 B = 8870.582621 C = 9269.072612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.017 3.983 3 C -0.213 4.213 4 C 0.013 3.987 5 C -0.093 4.093 6 C 0.554 3.446 7 O -0.517 6.517 8 N -0.601 5.601 9 C 0.077 3.923 10 C 0.108 3.892 11 C 0.143 3.857 12 N -0.730 5.730 13 C -0.239 4.239 14 H 0.070 0.930 15 C -0.014 4.014 16 N -0.934 5.934 17 Si 0.909 3.091 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.285 1.285 21 C -0.122 4.122 22 C -0.148 4.148 23 O 0.104 5.896 24 N -0.364 5.364 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.173 0.827 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.024 0.976 35 H 0.019 0.981 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.119 0.881 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.100 -12.801 18.506 25.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.141 4.141 3 C -0.234 4.234 4 C -0.050 4.050 5 C -0.098 4.098 6 C 0.339 3.661 7 O -0.392 6.392 8 N -0.333 5.333 9 C -0.066 4.066 10 C -0.014 4.014 11 C 0.015 3.985 12 N -0.375 5.375 13 C -0.370 4.370 14 H 0.088 0.912 15 C -0.209 4.209 16 N -0.582 5.582 17 Si 0.740 3.260 18 H -0.213 1.213 19 H -0.216 1.216 20 H -0.212 1.212 21 C -0.159 4.159 22 C -0.185 4.185 23 O 0.037 5.963 24 N -0.068 5.068 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.190 0.810 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.042 0.958 35 H 0.036 0.964 36 H 0.217 0.783 37 H 0.066 0.934 38 H 0.137 0.863 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.126 -13.451 18.506 25.439 hybrid contribution 0.493 1.118 -0.701 1.408 sum -10.633 -12.333 17.805 24.129 Atomic orbital electron populations 1.20179 0.85776 1.03786 1.03583 1.23593 0.99117 0.88645 1.02749 1.22416 0.90868 1.01390 1.08774 1.22823 0.95481 0.83481 1.03248 1.19383 0.91403 1.02972 0.95998 1.18974 0.77083 0.87224 0.82789 1.90766 1.49995 1.13651 1.84770 1.47709 1.71449 1.07289 1.06869 1.21853 1.01739 0.79388 1.03612 1.21779 0.99188 0.95784 0.84664 1.20903 0.92353 0.94450 0.90818 1.42201 1.06852 1.61822 1.26647 1.19159 0.85430 1.26322 1.06097 0.91231 1.24749 0.97231 1.00871 0.98096 1.69648 1.27122 1.42393 1.19085 0.86235 0.83606 0.78282 0.77869 1.21255 1.21638 1.21210 1.23195 1.01179 0.99597 0.91937 1.23248 0.95219 0.98706 1.01316 1.84819 1.21678 1.22258 1.67573 1.73853 0.89196 1.23845 1.19914 0.90006 0.90525 0.89912 0.80981 0.93072 0.90133 0.90844 0.90249 0.89706 0.95788 0.96355 0.78266 0.93419 0.86256 0.87400 0.86884 0.86857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.47 36.01 0.38 -0.15 16 2 C 0.02 0.18 7.33 -82.10 -0.60 -0.42 16 3 C -0.21 -2.26 11.06 -39.38 -0.44 -2.70 16 4 C 0.01 0.14 5.57 -35.30 -0.20 -0.05 16 5 C -0.09 -1.02 1.32 -156.81 -0.21 -1.23 16 6 C 0.55 8.24 6.92 -10.99 -0.08 8.17 16 7 O -0.52 -9.69 16.31 5.56 0.09 -9.60 16 8 N -0.60 -8.69 2.87 -181.57 -0.52 -9.22 16 9 C 0.08 0.86 9.49 59.85 0.57 1.43 16 10 C 0.11 1.87 5.48 -4.04 -0.02 1.85 16 11 C 0.14 3.04 6.58 -4.03 -0.03 3.01 16 12 N -0.73 -19.17 5.60 -59.90 -0.34 -19.50 16 13 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 14 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 15 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 16 N -0.93 -28.68 13.06 55.49 0.72 -27.96 16 17 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 C -0.12 -1.09 9.76 -26.69 -0.26 -1.35 16 22 C -0.15 -1.23 8.78 -26.69 -0.23 -1.46 16 23 O 0.10 1.17 11.19 17.18 0.19 1.36 16 24 N -0.36 -4.33 12.07 33.42 0.40 -3.93 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.17 1.65 8.06 -52.48 -0.42 1.22 16 29 H 0.05 0.55 8.13 -51.93 -0.42 0.13 16 30 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 31 H 0.07 0.69 6.07 -51.93 -0.32 0.38 16 32 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 33 H 0.08 1.61 7.50 -51.93 -0.39 1.22 16 34 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.38 10.45 7.67 -40.82 -0.31 10.13 16 37 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.12 1.17 7.98 -51.93 -0.41 0.75 16 39 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 353.06 15.07 5.32 5.32 Total: -1.00 -34.40 353.06 -6.55 -40.96 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.04 Total: 5.26 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -1.36 Total: -0.43 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: 0.27 Total: -60.60 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.28 Total: -8.24 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.40 -6.55 -40.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691444900.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.186 kcal (2) G-P(sol) polarization free energy of solvation -34.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds