Wall clock time and date at job start Tue Mar 31 2020 03:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38220 * 120.42100 * 2 1 4 4 N 1.31860 * 120.76284 * 179.97438 * 3 2 1 5 5 C 1.31884 * 121.72590 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.76784 * 0.02562 * 5 4 3 7 7 C 1.38627 * 120.41849 * 179.97438 * 2 1 3 8 8 C 1.50704 * 120.78770 * 0.04459 * 7 2 1 9 9 C 1.50702 * 109.47290 * 84.97829 * 8 7 2 10 10 O 1.21288 * 119.99867 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00326 * 179.97438 * 9 8 7 12 12 C 1.46493 * 120.00392 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47520 * 180.02562 * 12 11 9 14 14 H 1.09007 * 109.46684 * 305.00375 * 13 12 11 15 15 O 1.42892 * 109.47119 * 64.99874 * 13 12 11 16 16 C 1.53000 * 109.47300 * 185.00741 * 13 12 11 17 17 N 1.46498 * 109.46954 * 180.02562 * 16 13 12 18 18 C 1.36942 * 119.99913 * 179.97438 * 17 16 13 19 19 H 1.08001 * 119.99979 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99836 * 179.97438 * 18 17 16 21 21 N 1.31610 * 120.00262 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99710 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47068 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46703 * 120.00483 * 22 20 18 25 25 H 1.48499 * 109.46719 * 240.00384 * 22 20 18 26 26 H 1.08993 * 109.47197 * 270.02066 * 1 2 3 27 27 H 1.09005 * 109.46763 * 30.02164 * 1 2 3 28 28 H 1.09000 * 109.47166 * 150.01378 * 1 2 3 29 29 H 1.07999 * 119.62072 * 0.02562 * 3 2 1 30 30 H 1.07995 * 119.61420 * 179.97438 * 5 4 3 31 31 H 1.07994 * 120.42499 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.46909 * 204.97455 * 8 7 2 33 33 H 1.08993 * 109.47161 * 324.97276 * 8 7 2 34 34 H 0.97006 * 119.99608 * 0.02562 * 11 9 8 35 35 H 1.09003 * 109.47419 * 300.01200 * 12 11 9 36 36 H 1.09005 * 109.46744 * 60.00625 * 12 11 9 37 37 H 0.96702 * 113.99326 * 60.00645 * 15 13 12 38 38 H 1.09002 * 109.46518 * 299.99303 * 16 13 12 39 39 H 1.08994 * 109.47775 * 59.99431 * 16 13 12 40 40 H 0.96997 * 120.00404 * 359.97438 * 17 16 13 41 41 H 0.97004 * 120.00601 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2256 0.0822 0.0005 6 6 3.5948 -1.1472 -0.0005 7 6 2.2089 -1.1954 0.0005 8 6 1.4830 -2.5162 0.0001 9 6 1.1330 -2.8966 -1.4155 10 8 1.4429 -2.1673 -2.3337 11 7 0.4765 -4.0477 -1.6613 12 6 0.1357 -4.4172 -3.0372 13 6 -0.6011 -5.7581 -3.0377 14 1 0.0040 -6.5053 -2.5241 15 8 -1.8530 -5.6139 -2.3640 16 6 -0.8466 -6.2047 -4.4804 17 7 -1.5527 -7.4883 -4.4807 18 6 -1.8829 -8.0877 -5.6669 19 1 -1.6232 -7.6140 -6.6020 20 6 -2.5515 -9.3042 -5.6672 21 7 -2.8684 -9.8813 -4.5276 22 14 -3.0013 -10.1223 -7.2853 23 1 -2.5360 -9.2765 -8.4137 24 1 -2.3499 -11.4545 -7.3642 25 1 -4.4751 -10.2864 -7.3639 26 1 -0.3633 0.0004 1.0276 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8901 -0.5136 29 1 1.6675 2.1276 0.0004 30 1 5.3046 0.1284 0.0005 31 1 4.1736 -2.0589 -0.0009 32 1 2.1241 -3.2832 0.4345 33 1 0.5701 -2.4292 0.5893 34 1 0.2289 -4.6311 -0.9269 35 1 -0.5058 -3.6503 -3.4712 36 1 1.0485 -4.5037 -3.6268 37 1 -2.4440 -4.9635 -2.7674 38 1 -1.4517 -5.4575 -4.9939 39 1 0.1082 -6.3146 -4.9943 40 1 -1.7863 -7.9136 -3.6409 41 1 -3.3359 -10.7313 -4.5278 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753911088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:16 Heat of formation + Delta-G solvation = -50.724301 kcal Electronic energy + Delta-G solvation = -22478.821830 eV Core-core repulsion = 18972.614477 eV Total energy + Delta-G solvation = -3506.207353 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -40.84178 -39.57608 -37.69330 -34.69470 -34.42130 -34.03686 -32.70764 -31.37591 -29.91479 -28.52028 -27.35421 -25.33346 -23.25673 -22.65639 -21.92537 -21.48938 -20.36399 -17.58414 -17.19027 -17.08236 -16.95024 -16.24641 -16.01325 -15.39123 -15.16607 -14.91319 -14.50847 -14.47949 -13.81391 -13.66430 -13.55547 -13.18381 -13.09547 -13.01911 -12.90504 -12.60407 -12.44410 -12.24286 -11.89900 -11.63151 -10.99595 -10.86773 -10.69111 -10.28321 -10.16965 -9.88254 -9.75291 -9.70482 -9.49577 -9.20675 -9.12903 -8.94916 -6.98239 -5.80181 -3.10066 0.89374 0.96125 2.44610 2.99806 3.40689 3.46361 3.48639 3.58676 4.14047 4.24992 4.39749 4.49425 4.60807 4.64647 4.69669 4.70163 4.84675 4.99042 5.03616 5.15695 5.18526 5.27573 5.36462 5.51328 5.52405 5.55389 5.67911 5.73692 5.81089 5.88755 6.05474 6.14235 6.29395 6.45714 6.46729 6.61666 7.33510 7.65330 7.74233 7.87306 8.05361 8.37940 9.49837 10.05921 10.41788 11.42153 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.044238 B = 0.002296 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.793013 B =12191.179792 C =12323.432191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.120 4.120 3 C 0.097 3.903 4 N -0.485 5.485 5 C 0.091 3.909 6 C -0.156 4.156 7 C -0.022 4.022 8 C -0.108 4.108 9 C 0.513 3.487 10 O -0.534 6.534 11 N -0.721 5.721 12 C 0.090 3.910 13 C 0.089 3.911 14 H 0.104 0.896 15 O -0.552 6.552 16 C 0.127 3.873 17 N -0.726 5.726 18 C -0.244 4.244 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.929 5.929 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.154 0.846 30 H 0.155 0.845 31 H 0.133 0.867 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.406 0.594 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.374 0.626 38 H 0.023 0.977 39 H 0.028 0.972 40 H 0.389 0.611 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.592 18.678 13.691 25.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.122 4.122 3 C -0.060 4.060 4 N -0.193 5.193 5 C -0.066 4.066 6 C -0.176 4.176 7 C -0.031 4.031 8 C -0.147 4.147 9 C 0.298 3.702 10 O -0.411 6.411 11 N -0.373 5.373 12 C -0.034 4.034 13 C 0.029 3.971 14 H 0.122 0.878 15 O -0.357 6.357 16 C -0.002 4.002 17 N -0.371 5.371 18 C -0.375 4.375 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.578 5.578 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.171 0.829 30 H 0.172 0.828 31 H 0.151 0.849 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.240 0.760 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.221 0.779 38 H 0.041 0.959 39 H 0.046 0.954 40 H 0.224 0.776 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.504 19.509 13.218 25.800 hybrid contribution -1.052 -1.425 -0.750 1.923 sum 9.453 18.084 12.469 23.914 Atomic orbital electron populations 1.20757 0.90288 1.03581 1.02368 1.20746 0.97527 0.93588 1.00380 1.22618 0.89924 0.97289 0.96155 1.67638 1.08353 1.31492 1.11800 1.22669 1.00285 0.87587 0.96052 1.21999 0.94328 0.99862 1.01438 1.19551 0.93531 0.93726 0.96276 1.20717 1.02635 0.95683 0.95696 1.20349 0.77942 0.81161 0.90723 1.90754 1.53070 1.51085 1.46163 1.45935 1.58600 1.22767 1.09989 1.22121 1.00844 0.97644 0.82827 1.22384 0.85117 0.94194 0.95359 0.87788 1.86573 1.27800 1.65195 1.56122 1.21191 0.96358 0.90249 0.92436 1.42236 1.68408 1.19656 1.06784 1.19262 1.30628 1.01590 0.86006 0.91157 1.24767 1.01299 0.97906 0.96906 1.69682 1.45635 1.18546 1.23909 0.86109 0.77856 0.79277 0.82880 1.20534 1.21801 1.21789 0.90726 0.90906 0.91353 0.82882 0.82806 0.84865 0.87433 0.87285 0.75957 0.91056 0.90438 0.77917 0.95950 0.95384 0.77645 0.93496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 9.30 36.00 0.33 -0.51 16 2 C -0.12 -1.15 5.90 -104.49 -0.62 -1.77 16 3 C 0.10 0.97 10.86 -17.55 -0.19 0.78 16 4 N -0.48 -5.48 10.36 -13.26 -0.14 -5.61 16 5 C 0.09 0.88 11.18 -17.55 -0.20 0.68 16 6 C -0.16 -1.44 9.80 -39.44 -0.39 -1.82 16 7 C -0.02 -0.21 4.41 -104.31 -0.46 -0.67 16 8 C -0.11 -0.82 5.19 -29.03 -0.15 -0.97 16 9 C 0.51 5.70 7.15 -10.99 -0.08 5.62 16 10 O -0.53 -8.22 16.03 5.55 0.09 -8.13 16 11 N -0.72 -7.39 5.50 -60.29 -0.33 -7.72 16 12 C 0.09 1.10 5.31 -4.05 -0.02 1.08 16 13 C 0.09 1.29 3.09 -26.73 -0.08 1.21 16 14 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 15 O -0.55 -8.26 13.03 -35.23 -0.46 -8.72 16 16 C 0.13 2.38 5.92 -4.04 -0.02 2.36 16 17 N -0.73 -18.06 5.49 -59.91 -0.33 -18.39 16 18 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 22 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 28 H 0.07 0.57 6.35 -51.93 -0.33 0.24 16 29 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.11 0.58 8.07 -51.93 -0.42 0.16 16 33 H 0.11 0.62 7.10 -51.93 -0.37 0.25 16 34 H 0.41 3.41 8.47 -40.82 -0.35 3.06 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.37 4.67 9.05 45.56 0.41 5.09 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.39 10.35 7.54 -40.82 -0.31 10.04 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 351.80 15.07 5.30 5.30 Total: -1.00 -35.48 351.80 -7.41 -42.89 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -5.13 Total: 11.87 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -2.12 Total: -1.40 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.07 Total: -59.07 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.37 Total: -16.85 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.48 -7.41 -42.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753911088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.833 kcal (2) G-P(sol) polarization free energy of solvation -35.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds