Wall clock time and date at job start Tue Mar 31 2020 03:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38220 * 120.42100 * 2 1 4 4 N 1.31860 * 120.76284 * 179.97438 * 3 2 1 5 5 C 1.31884 * 121.72590 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.76784 * 0.02562 * 5 4 3 7 7 C 1.38627 * 120.41849 * 179.97438 * 2 1 3 8 8 C 1.50704 * 120.78770 * 0.04459 * 7 2 1 9 9 C 1.50702 * 109.47290 * 84.97829 * 8 7 2 10 10 O 1.21288 * 119.99867 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00326 * 179.97438 * 9 8 7 12 12 C 1.46493 * 120.00392 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47520 * 180.02562 * 12 11 9 14 14 H 1.09007 * 109.46684 * 305.00375 * 13 12 11 15 15 O 1.42892 * 109.47119 * 64.99874 * 13 12 11 16 16 C 1.53000 * 109.47300 * 185.00741 * 13 12 11 17 17 N 1.46498 * 109.46954 * 180.02562 * 16 13 12 18 18 C 1.36942 * 119.99913 * 179.97438 * 17 16 13 19 19 H 1.08001 * 119.99979 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99836 * 179.97438 * 18 17 16 21 21 N 1.31610 * 120.00262 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99710 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47068 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46703 * 120.00483 * 22 20 18 25 25 H 1.48499 * 109.46719 * 240.00384 * 22 20 18 26 26 H 1.08993 * 109.47197 * 270.02066 * 1 2 3 27 27 H 1.09005 * 109.46763 * 30.02164 * 1 2 3 28 28 H 1.09000 * 109.47166 * 150.01378 * 1 2 3 29 29 H 1.07999 * 119.62072 * 0.02562 * 3 2 1 30 30 H 1.07995 * 119.61420 * 179.97438 * 5 4 3 31 31 H 1.07994 * 120.42499 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.46909 * 204.97455 * 8 7 2 33 33 H 1.08993 * 109.47161 * 324.97276 * 8 7 2 34 34 H 0.97006 * 119.99608 * 0.02562 * 11 9 8 35 35 H 1.09003 * 109.47419 * 300.01200 * 12 11 9 36 36 H 1.09005 * 109.46744 * 60.00625 * 12 11 9 37 37 H 0.96702 * 113.99326 * 60.00645 * 15 13 12 38 38 H 1.09002 * 109.46518 * 299.99303 * 16 13 12 39 39 H 1.08994 * 109.47775 * 59.99431 * 16 13 12 40 40 H 0.96997 * 120.00404 * 359.97438 * 17 16 13 41 41 H 0.97004 * 120.00601 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2256 0.0822 0.0005 6 6 3.5948 -1.1472 -0.0005 7 6 2.2089 -1.1954 0.0005 8 6 1.4830 -2.5162 0.0001 9 6 1.1330 -2.8966 -1.4155 10 8 1.4429 -2.1673 -2.3337 11 7 0.4765 -4.0477 -1.6613 12 6 0.1357 -4.4172 -3.0372 13 6 -0.6011 -5.7581 -3.0377 14 1 0.0040 -6.5053 -2.5241 15 8 -1.8530 -5.6139 -2.3640 16 6 -0.8466 -6.2047 -4.4804 17 7 -1.5527 -7.4883 -4.4807 18 6 -1.8829 -8.0877 -5.6669 19 1 -1.6232 -7.6140 -6.6020 20 6 -2.5515 -9.3042 -5.6672 21 7 -2.8684 -9.8813 -4.5276 22 14 -3.0013 -10.1223 -7.2853 23 1 -2.5360 -9.2765 -8.4137 24 1 -2.3499 -11.4545 -7.3642 25 1 -4.4751 -10.2864 -7.3639 26 1 -0.3633 0.0004 1.0276 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8901 -0.5136 29 1 1.6675 2.1276 0.0004 30 1 5.3046 0.1284 0.0005 31 1 4.1736 -2.0589 -0.0009 32 1 2.1241 -3.2832 0.4345 33 1 0.5701 -2.4292 0.5893 34 1 0.2289 -4.6311 -0.9269 35 1 -0.5058 -3.6503 -3.4712 36 1 1.0485 -4.5037 -3.6268 37 1 -2.4440 -4.9635 -2.7674 38 1 -1.4517 -5.4575 -4.9939 39 1 0.1082 -6.3146 -4.9943 40 1 -1.7863 -7.9136 -3.6409 41 1 -3.3359 -10.7313 -4.5278 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753911088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:15 Heat of formation + Delta-G solvation = -79.242173 kcal Electronic energy + Delta-G solvation = -22480.058458 eV Core-core repulsion = 18972.614477 eV Total energy + Delta-G solvation = -3507.443981 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.57328 -40.45969 -38.92150 -36.08675 -35.38486 -35.23890 -33.36938 -33.18683 -31.05712 -29.55774 -28.05178 -26.86566 -24.58688 -23.68981 -22.79315 -22.69304 -21.26967 -19.26390 -18.41029 -17.82242 -17.79048 -17.29857 -17.11291 -16.44967 -16.19342 -15.97748 -15.87480 -15.52711 -15.13364 -14.90974 -14.40728 -14.33358 -14.20656 -13.97385 -13.65912 -13.60067 -13.50872 -13.19168 -12.97064 -12.87492 -12.79057 -12.25412 -12.12911 -11.96269 -11.81590 -11.25461 -11.01452 -10.91575 -10.41339 -10.39291 -10.13856 -9.79946 -9.01945 -7.96012 -5.25376 0.21453 0.25903 1.47618 1.48010 1.58181 1.60486 2.13590 2.55416 2.87658 3.35555 3.47250 3.49837 3.60778 3.62556 3.80951 3.92933 4.02473 4.04556 4.08228 4.21026 4.41554 4.43038 4.51250 4.56218 4.61886 4.71599 4.76836 4.77526 4.90863 4.92768 5.07147 5.19759 5.20829 5.36833 5.39845 5.47823 5.81850 6.25546 6.52365 6.79563 7.04297 7.22223 7.32871 8.08109 8.31378 9.27268 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.044238 B = 0.002296 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.793013 B =12191.179792 C =12323.432191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.130 4.130 3 C 0.080 3.920 4 N -0.512 5.512 5 C 0.075 3.925 6 C -0.162 4.162 7 C -0.038 4.038 8 C -0.099 4.099 9 C 0.515 3.485 10 O -0.581 6.581 11 N -0.711 5.711 12 C 0.103 3.897 13 C 0.109 3.891 14 H 0.103 0.897 15 O -0.561 6.561 16 C 0.121 3.879 17 N -0.739 5.739 18 C -0.247 4.247 19 H 0.075 0.925 20 C -0.075 4.075 21 N -0.967 5.967 22 Si 0.974 3.026 23 H -0.267 1.267 24 H -0.293 1.293 25 H -0.293 1.293 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.169 0.831 30 H 0.174 0.826 31 H 0.154 0.846 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.417 0.583 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.385 0.615 38 H 0.029 0.971 39 H 0.032 0.968 40 H 0.378 0.622 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.768 18.995 14.118 25.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.132 4.132 3 C -0.077 4.077 4 N -0.221 5.221 5 C -0.081 4.081 6 C -0.182 4.182 7 C -0.047 4.047 8 C -0.138 4.138 9 C 0.302 3.698 10 O -0.460 6.460 11 N -0.363 5.363 12 C -0.022 4.022 13 C 0.049 3.951 14 H 0.121 0.879 15 O -0.368 6.368 16 C -0.007 4.007 17 N -0.383 5.383 18 C -0.379 4.379 19 H 0.093 0.907 20 C -0.268 4.268 21 N -0.617 5.617 22 Si 0.803 3.197 23 H -0.191 1.191 24 H -0.220 1.220 25 H -0.220 1.220 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.186 0.814 30 H 0.191 0.809 31 H 0.172 0.828 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.254 0.746 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.233 0.767 38 H 0.047 0.953 39 H 0.050 0.950 40 H 0.210 0.790 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 10.689 19.856 13.653 26.361 hybrid contribution -1.071 -1.444 -0.875 2.000 sum 9.618 18.412 12.777 24.387 Atomic orbital electron populations 1.20781 0.88953 1.03367 1.03598 1.21032 0.98640 0.93588 0.99924 1.22963 0.89893 0.98387 0.96432 1.67638 1.09147 1.32525 1.12794 1.23081 1.01376 0.87630 0.96029 1.22300 0.94635 1.00490 1.00766 1.19872 0.93976 0.94553 0.96253 1.20760 1.04119 0.95466 0.93503 1.20891 0.76823 0.80383 0.91665 1.90742 1.54946 1.52455 1.47886 1.45810 1.58194 1.22880 1.09448 1.21808 1.00197 0.96112 0.84074 1.22079 0.85293 0.95244 0.92443 0.87886 1.86553 1.28200 1.65840 1.56196 1.21412 0.95677 0.87905 0.95689 1.42412 1.68902 1.21520 1.05435 1.19663 1.29436 1.01611 0.87207 0.90681 1.25586 1.02175 0.98917 1.00093 1.69830 1.47055 1.18887 1.25963 0.85075 0.77120 0.78074 0.79474 1.19097 1.21985 1.21981 0.88677 0.90507 0.92135 0.81387 0.80908 0.82821 0.84626 0.84910 0.74568 0.91168 0.90954 0.76660 0.95316 0.95035 0.78986 0.93960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 9.30 71.24 0.66 -0.79 16 2 C -0.13 -2.34 5.90 -19.78 -0.12 -2.46 16 3 C 0.08 1.56 10.86 84.68 0.92 2.48 16 4 N -0.51 -11.46 10.36 -195.85 -2.03 -13.49 16 5 C 0.07 1.40 11.18 84.67 0.95 2.35 16 6 C -0.16 -2.75 9.80 22.36 0.22 -2.53 16 7 C -0.04 -0.66 4.41 -19.67 -0.09 -0.75 16 8 C -0.10 -1.25 5.19 29.10 0.15 -1.10 16 9 C 0.52 10.41 7.15 87.66 0.63 11.04 16 10 O -0.58 -17.29 16.03 -3.05 -0.05 -17.34 16 11 N -0.71 -12.99 5.50 -463.06 -2.55 -15.54 16 12 C 0.10 2.36 5.31 86.38 0.46 2.82 16 13 C 0.11 3.01 3.09 30.59 0.09 3.10 16 14 H 0.10 2.90 8.14 -2.38 -0.02 2.88 16 15 O -0.56 -15.92 13.03 -148.98 -1.94 -17.86 16 16 C 0.12 4.42 5.92 86.38 0.51 4.93 16 17 N -0.74 -36.55 5.49 -343.46 -1.89 -38.44 16 18 C -0.25 -13.65 9.99 84.03 0.84 -12.81 16 19 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 20 C -0.08 -4.29 5.50 84.86 0.47 -3.83 16 21 N -0.97 -58.87 13.06 21.65 0.28 -58.58 16 22 Si 0.97 45.73 29.55 68.60 2.03 47.76 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 26 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.08 0.94 8.09 -2.38 -0.02 0.92 16 28 H 0.06 0.90 6.35 -2.39 -0.02 0.89 16 29 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 30 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 31 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.14 0.96 8.07 -2.39 -0.02 0.94 16 33 H 0.13 1.05 7.10 -2.39 -0.02 1.04 16 34 H 0.42 5.84 8.47 -92.70 -0.79 5.06 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.38 9.00 9.05 -74.06 -0.67 8.33 16 38 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.38 20.16 7.54 -92.71 -0.70 19.46 16 41 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 Total: -1.00 -76.25 351.80 -1.53 -77.79 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: -1.09 Total: 33.25 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 5.69 Total: 2.46 kcal Atomic # 7 Polarization: -119.87 SS G_CDS: -6.18 Total: -126.05 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -1.99 Total: -35.20 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -76.25 -1.53 -77.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753911088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.456 kcal (2) G-P(sol) polarization free energy of solvation -76.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds