Wall clock time and date at job start Tue Mar 31 2020 02:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31887 * 119.61657 * 2 1 4 4 C 1.31862 * 121.72147 * 180.30967 * 3 2 1 5 5 C 1.38230 * 120.76386 * 359.70450 * 4 3 2 6 6 C 1.38627 * 119.15936 * 0.02562 * 5 4 3 7 7 C 1.38179 * 119.61868 * 179.73103 * 2 1 3 8 8 C 1.50701 * 120.41433 * 359.97438 * 7 2 1 9 9 C 1.50703 * 109.47355 * 84.72626 * 8 7 2 10 10 O 1.21283 * 119.99488 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00290 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27728 * 11 9 8 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 H 1.09008 * 109.47304 * 304.99667 * 13 12 11 15 15 O 1.42902 * 109.47328 * 64.99617 * 13 12 11 16 16 C 1.53003 * 109.47530 * 184.99929 * 13 12 11 17 17 N 1.46491 * 109.47329 * 179.97438 * 16 13 12 18 18 C 1.36943 * 120.00083 * 180.02562 * 17 16 13 19 19 H 1.08000 * 119.99413 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00067 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00346 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99532 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47242 * 90.00151 * 22 20 18 24 24 H 1.48506 * 109.46926 * 209.99378 * 22 20 18 25 25 H 1.48495 * 109.47585 * 329.99870 * 22 20 18 26 26 H 1.09001 * 109.47017 * 270.27352 * 1 2 3 27 27 H 1.09004 * 109.46544 * 30.27173 * 1 2 3 28 28 H 1.08991 * 109.47300 * 150.26521 * 1 2 3 29 29 H 1.07993 * 119.61374 * 179.72748 * 4 3 2 30 30 H 1.07998 * 120.41727 * 179.97438 * 5 4 3 31 31 H 1.07997 * 120.78798 * 179.97438 * 6 5 4 32 32 H 1.08998 * 109.47477 * 324.72472 * 8 7 2 33 33 H 1.09002 * 109.47412 * 204.72730 * 8 7 2 34 34 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 35 35 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 36 36 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 37 37 H 0.96696 * 113.99765 * 60.00422 * 15 13 12 38 38 H 1.09000 * 109.46800 * 300.00452 * 16 13 12 39 39 H 1.09002 * 109.46892 * 59.99206 * 16 13 12 40 40 H 0.97004 * 120.00228 * 359.97438 * 17 16 13 41 41 H 0.96990 * 120.00008 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4765 1.1950 -0.0061 5 6 4.2267 0.0340 -0.0066 6 6 3.5765 -1.1903 -0.0011 7 6 2.1900 -1.2012 0.0056 8 6 1.4372 -2.5068 0.0123 9 6 1.0726 -2.8837 -1.4005 10 8 1.3921 -2.1629 -2.3220 11 7 0.3905 -4.0213 -1.6398 12 6 0.0414 -4.3907 -3.0138 13 6 -0.7185 -5.7185 -3.0075 14 1 -0.1257 -6.4740 -2.4916 15 8 -1.9667 -5.5498 -2.3325 16 6 -0.9741 -6.1669 -4.4478 17 7 -1.7012 -7.4386 -4.4417 18 6 -2.0426 -8.0379 -5.6248 19 1 -1.7761 -7.5726 -6.5623 20 6 -2.7311 -9.2432 -5.6190 21 7 -3.0554 -9.8104 -4.4764 22 14 -3.1973 -10.0602 -7.2328 23 1 -2.1051 -10.9711 -7.6602 24 1 -4.4484 -10.8391 -7.0500 25 1 -3.4090 -9.0200 -8.2713 26 1 -0.3633 0.0049 1.0277 27 1 -0.3632 0.8876 -0.5181 28 1 -0.3633 -0.8923 -0.5097 29 1 3.9753 2.1528 -0.0103 30 1 5.3057 0.0802 -0.0120 31 1 4.1367 -2.1137 -0.0018 32 1 0.5291 -2.3996 0.6056 33 1 2.0645 -3.2857 0.4458 34 1 0.1347 -4.5975 -0.9027 35 1 -0.5872 -3.6144 -3.4502 36 1 0.9515 -4.4957 -3.6043 37 1 -2.5470 -4.8910 -2.7377 38 1 -1.5668 -5.4115 -4.9637 39 1 -0.0220 -6.2955 -4.9626 40 1 -1.9402 -7.8566 -3.5996 41 1 -3.5368 -10.6524 -4.4724 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753928164.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:41 Heat of formation + Delta-G solvation = -49.110361 kcal Electronic energy + Delta-G solvation = -22497.151301 eV Core-core repulsion = 18991.013934 eV Total energy + Delta-G solvation = -3506.137368 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.85206 -39.53677 -37.66123 -34.45813 -34.05254 -34.01526 -33.22776 -31.35639 -29.80458 -28.58077 -27.41649 -25.28542 -23.19993 -22.58779 -22.01930 -21.46910 -20.33534 -17.53743 -17.17880 -17.08833 -16.75954 -16.45963 -15.99680 -15.44283 -14.98818 -14.82875 -14.51526 -14.49032 -13.79331 -13.56118 -13.40271 -13.35959 -13.08831 -12.94451 -12.68891 -12.48488 -12.38995 -12.27733 -11.87226 -11.66695 -10.98389 -10.84422 -10.66956 -10.25017 -10.19051 -9.94664 -9.83038 -9.69479 -9.53148 -9.17253 -9.02308 -8.93174 -6.97069 -5.78971 -3.08833 0.83137 1.04535 2.48812 3.02282 3.41798 3.46935 3.48737 3.57694 4.05615 4.28164 4.47985 4.51131 4.61791 4.64534 4.71204 4.73416 4.87551 5.04614 5.08427 5.20469 5.28528 5.32963 5.36515 5.43754 5.52695 5.57237 5.75736 5.80599 5.90558 5.90956 5.97048 6.16005 6.32533 6.46081 6.47201 6.63420 7.37548 7.65876 7.76504 7.89656 8.09604 8.39268 9.50979 10.07198 10.43079 11.43333 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.044513 B = 0.002303 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.880904 B =12155.175218 C =12286.357143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.145 3.855 3 N -0.486 5.486 4 C 0.100 3.900 5 C -0.180 4.180 6 C -0.061 4.061 7 C -0.116 4.116 8 C -0.101 4.101 9 C 0.511 3.489 10 O -0.535 6.535 11 N -0.721 5.721 12 C 0.090 3.910 13 C 0.089 3.911 14 H 0.104 0.896 15 O -0.552 6.552 16 C 0.126 3.874 17 N -0.726 5.726 18 C -0.244 4.244 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.930 5.930 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.155 0.845 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.405 0.595 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.374 0.626 38 H 0.023 0.977 39 H 0.028 0.972 40 H 0.389 0.611 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.957 18.595 13.617 25.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.008 3.992 3 N -0.196 5.196 4 C -0.057 4.057 5 C -0.200 4.200 6 C -0.087 4.087 7 C -0.118 4.118 8 C -0.141 4.141 9 C 0.297 3.703 10 O -0.412 6.412 11 N -0.373 5.373 12 C -0.034 4.034 13 C 0.030 3.970 14 H 0.122 0.878 15 O -0.357 6.357 16 C -0.002 4.002 17 N -0.371 5.371 18 C -0.375 4.375 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.578 5.578 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.172 0.828 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.240 0.760 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.221 0.779 38 H 0.041 0.959 39 H 0.046 0.954 40 H 0.224 0.776 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.923 19.398 13.150 26.294 hybrid contribution 0.003 -1.345 -0.763 1.546 sum 11.926 18.053 12.387 24.932 Atomic orbital electron populations 1.20763 0.89009 1.03863 1.02826 1.21077 0.96889 0.87709 0.93560 1.67528 1.10108 1.29091 1.12827 1.22722 0.89479 0.98458 0.94998 1.22072 1.01416 0.93372 1.03107 1.21444 0.93565 0.98642 0.95027 1.20076 0.94215 0.94881 1.02653 1.20640 1.02272 0.95763 0.95458 1.20448 0.77971 0.81005 0.90908 1.90746 1.53483 1.51046 1.45888 1.45943 1.57417 1.24016 1.09959 1.22113 1.00678 0.97701 0.82957 1.22383 0.85057 0.94276 0.95331 0.87811 1.86572 1.28709 1.64526 1.55884 1.21192 0.96174 0.90382 0.92490 1.42229 1.67170 1.20890 1.06781 1.19217 1.29937 1.02339 0.86040 0.91218 1.24765 1.01203 0.98010 0.96888 1.69673 1.44945 1.19376 1.23800 0.86175 0.77696 0.79319 0.82887 1.21674 1.21706 1.20743 0.90248 0.90231 0.90817 0.82821 0.84799 0.84918 0.87362 0.87670 0.75968 0.91045 0.90498 0.77904 0.95940 0.95421 0.77641 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.39 36.01 0.34 -0.64 16 2 C 0.15 1.62 6.78 -82.59 -0.56 1.06 16 3 N -0.49 -5.76 10.27 -9.47 -0.10 -5.86 16 4 C 0.10 0.95 11.18 -17.54 -0.20 0.76 16 5 C -0.18 -1.51 10.11 -39.44 -0.40 -1.91 16 6 C -0.06 -0.55 9.84 -39.28 -0.39 -0.94 16 7 C -0.12 -1.16 4.39 -104.49 -0.46 -1.62 16 8 C -0.10 -0.80 5.16 -29.03 -0.15 -0.95 16 9 C 0.51 5.79 7.03 -10.98 -0.08 5.71 16 10 O -0.54 -8.38 16.03 5.55 0.09 -8.29 16 11 N -0.72 -7.51 5.50 -60.30 -0.33 -7.85 16 12 C 0.09 1.12 5.31 -4.04 -0.02 1.09 16 13 C 0.09 1.31 3.09 -26.73 -0.08 1.22 16 14 H 0.10 1.55 8.14 -51.92 -0.42 1.13 16 15 O -0.55 -8.33 13.03 -35.23 -0.46 -8.79 16 16 C 0.13 2.40 5.92 -4.05 -0.02 2.37 16 17 N -0.73 -18.13 5.49 -59.91 -0.33 -18.46 16 18 C -0.24 -6.81 9.99 -15.06 -0.15 -6.97 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 22 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.67 6.14 -51.93 -0.32 0.35 16 29 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 31 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.11 0.64 7.02 -51.93 -0.36 0.28 16 33 H 0.11 0.58 8.06 -51.93 -0.42 0.16 16 34 H 0.41 3.46 8.47 -40.82 -0.35 3.12 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.37 4.73 9.04 45.56 0.41 5.15 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.39 10.39 7.54 -40.82 -0.31 10.08 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 351.56 15.07 5.30 5.30 Total: -1.00 -35.69 351.56 -7.51 -43.20 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -5.12 Total: 12.11 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -2.26 Total: -1.25 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -0.03 Total: -59.58 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.37 Total: -17.08 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.69 -7.51 -43.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753928164.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.910 kcal (2) G-P(sol) polarization free energy of solvation -35.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds