Wall clock time and date at job start Tue Mar 31 2020 02:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31887 * 119.61657 * 2 1 4 4 C 1.31862 * 121.72147 * 180.30967 * 3 2 1 5 5 C 1.38230 * 120.76386 * 359.70450 * 4 3 2 6 6 C 1.38627 * 119.15936 * 0.02562 * 5 4 3 7 7 C 1.38179 * 119.61868 * 179.73103 * 2 1 3 8 8 C 1.50701 * 120.41433 * 359.97438 * 7 2 1 9 9 C 1.50703 * 109.47355 * 84.72626 * 8 7 2 10 10 O 1.21283 * 119.99488 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00290 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27728 * 11 9 8 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 H 1.09008 * 109.47304 * 304.99667 * 13 12 11 15 15 O 1.42902 * 109.47328 * 64.99617 * 13 12 11 16 16 C 1.53003 * 109.47530 * 184.99929 * 13 12 11 17 17 N 1.46491 * 109.47329 * 179.97438 * 16 13 12 18 18 C 1.36943 * 120.00083 * 180.02562 * 17 16 13 19 19 H 1.08000 * 119.99413 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00067 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00346 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99532 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47242 * 90.00151 * 22 20 18 24 24 H 1.48506 * 109.46926 * 209.99378 * 22 20 18 25 25 H 1.48495 * 109.47585 * 329.99870 * 22 20 18 26 26 H 1.09001 * 109.47017 * 270.27352 * 1 2 3 27 27 H 1.09004 * 109.46544 * 30.27173 * 1 2 3 28 28 H 1.08991 * 109.47300 * 150.26521 * 1 2 3 29 29 H 1.07993 * 119.61374 * 179.72748 * 4 3 2 30 30 H 1.07998 * 120.41727 * 179.97438 * 5 4 3 31 31 H 1.07997 * 120.78798 * 179.97438 * 6 5 4 32 32 H 1.08998 * 109.47477 * 324.72472 * 8 7 2 33 33 H 1.09002 * 109.47412 * 204.72730 * 8 7 2 34 34 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 35 35 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 36 36 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 37 37 H 0.96696 * 113.99765 * 60.00422 * 15 13 12 38 38 H 1.09000 * 109.46800 * 300.00452 * 16 13 12 39 39 H 1.09002 * 109.46892 * 59.99206 * 16 13 12 40 40 H 0.97004 * 120.00228 * 359.97438 * 17 16 13 41 41 H 0.96990 * 120.00008 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4765 1.1950 -0.0061 5 6 4.2267 0.0340 -0.0066 6 6 3.5765 -1.1903 -0.0011 7 6 2.1900 -1.2012 0.0056 8 6 1.4372 -2.5068 0.0123 9 6 1.0726 -2.8837 -1.4005 10 8 1.3921 -2.1629 -2.3220 11 7 0.3905 -4.0213 -1.6398 12 6 0.0414 -4.3907 -3.0138 13 6 -0.7185 -5.7185 -3.0075 14 1 -0.1257 -6.4740 -2.4916 15 8 -1.9667 -5.5498 -2.3325 16 6 -0.9741 -6.1669 -4.4478 17 7 -1.7012 -7.4386 -4.4417 18 6 -2.0426 -8.0379 -5.6248 19 1 -1.7761 -7.5726 -6.5623 20 6 -2.7311 -9.2432 -5.6190 21 7 -3.0554 -9.8104 -4.4764 22 14 -3.1973 -10.0602 -7.2328 23 1 -2.1051 -10.9711 -7.6602 24 1 -4.4484 -10.8391 -7.0500 25 1 -3.4090 -9.0200 -8.2713 26 1 -0.3633 0.0049 1.0277 27 1 -0.3632 0.8876 -0.5181 28 1 -0.3633 -0.8923 -0.5097 29 1 3.9753 2.1528 -0.0103 30 1 5.3057 0.0802 -0.0120 31 1 4.1367 -2.1137 -0.0018 32 1 0.5291 -2.3996 0.6056 33 1 2.0645 -3.2857 0.4458 34 1 0.1347 -4.5975 -0.9027 35 1 -0.5872 -3.6144 -3.4502 36 1 0.9515 -4.4957 -3.6043 37 1 -2.5470 -4.8910 -2.7377 38 1 -1.5668 -5.4115 -4.9637 39 1 -0.0220 -6.2955 -4.9626 40 1 -1.9402 -7.8566 -3.5996 41 1 -3.5368 -10.6524 -4.4724 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753928164.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:40 Heat of formation + Delta-G solvation = -77.988159 kcal Electronic energy + Delta-G solvation = -22498.403537 eV Core-core repulsion = 18991.013934 eV Total energy + Delta-G solvation = -3507.389603 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.58934 -40.43649 -38.90397 -36.07387 -35.27244 -34.77519 -33.89371 -33.19238 -30.98580 -29.56024 -28.22250 -26.80760 -24.56534 -23.60305 -22.83957 -22.73140 -21.26274 -19.25648 -18.36627 -17.82831 -17.72114 -17.28474 -17.12226 -16.53250 -16.36571 -15.91170 -15.63047 -15.49179 -15.21904 -14.89560 -14.39624 -14.25162 -14.11683 -13.99250 -13.85005 -13.43687 -13.34726 -13.14015 -12.98034 -12.94129 -12.75498 -12.30145 -12.16691 -11.96665 -11.80772 -11.23038 -10.99786 -10.90354 -10.60417 -10.39564 -10.11942 -9.71364 -9.01555 -7.95482 -5.24908 0.14605 0.36554 1.47659 1.49113 1.57652 1.62910 2.14870 2.55859 2.86549 3.35922 3.41395 3.48212 3.61540 3.62885 3.88681 3.96040 3.99298 4.06480 4.12676 4.21825 4.42349 4.49012 4.55406 4.62239 4.63226 4.68949 4.71464 4.73436 4.83895 4.93086 5.13977 5.21462 5.24993 5.31200 5.38998 5.47847 5.81866 6.25944 6.54900 6.80237 7.06512 7.24857 7.33223 8.08553 8.31904 9.27611 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.044513 B = 0.002303 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.880904 B =12155.175218 C =12286.357143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.119 3.881 3 N -0.519 5.519 4 C 0.084 3.916 5 C -0.180 4.180 6 C -0.072 4.072 7 C -0.129 4.129 8 C -0.093 4.093 9 C 0.513 3.487 10 O -0.582 6.582 11 N -0.711 5.711 12 C 0.103 3.897 13 C 0.109 3.891 14 H 0.104 0.896 15 O -0.561 6.561 16 C 0.121 3.879 17 N -0.739 5.739 18 C -0.249 4.249 19 H 0.075 0.925 20 C -0.075 4.075 21 N -0.967 5.967 22 Si 0.974 3.026 23 H -0.286 1.286 24 H -0.295 1.295 25 H -0.270 1.270 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.176 0.824 30 H 0.162 0.838 31 H 0.155 0.845 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.417 0.583 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.384 0.616 38 H 0.028 0.972 39 H 0.032 0.968 40 H 0.378 0.622 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.894 18.832 14.045 26.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.018 4.018 3 N -0.229 5.229 4 C -0.072 4.072 5 C -0.199 4.199 6 C -0.098 4.098 7 C -0.131 4.131 8 C -0.133 4.133 9 C 0.301 3.699 10 O -0.462 6.462 11 N -0.364 5.364 12 C -0.022 4.022 13 C 0.049 3.951 14 H 0.121 0.879 15 O -0.368 6.368 16 C -0.007 4.007 17 N -0.383 5.383 18 C -0.381 4.381 19 H 0.093 0.907 20 C -0.268 4.268 21 N -0.617 5.617 22 Si 0.803 3.197 23 H -0.213 1.213 24 H -0.221 1.221 25 H -0.195 1.195 26 H 0.116 0.884 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.193 0.807 30 H 0.180 0.820 31 H 0.172 0.828 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.254 0.746 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.233 0.767 38 H 0.046 0.954 39 H 0.050 0.950 40 H 0.210 0.790 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 12.869 19.662 13.587 27.144 hybrid contribution -0.222 -1.325 -0.890 1.612 sum 12.647 18.337 12.697 25.640 Atomic orbital electron populations 1.20768 0.88354 1.03207 1.03844 1.21419 0.97738 0.88227 0.94382 1.67514 1.11408 1.29904 1.14036 1.23202 0.89122 1.00082 0.94815 1.22424 1.02869 0.92819 1.01800 1.21853 0.93594 0.99870 0.94468 1.20316 0.94922 0.95237 1.02636 1.20691 1.03676 0.95655 0.93274 1.20999 0.76878 0.80205 0.91836 1.90732 1.55371 1.52439 1.47626 1.45819 1.57007 1.24100 1.09430 1.21804 1.00021 0.96192 0.84200 1.22083 0.85235 0.95290 0.92443 0.87852 1.86552 1.29111 1.65163 1.55970 1.21411 0.95458 0.88093 0.95716 1.42404 1.67705 1.22705 1.05442 1.19630 1.28820 1.02358 0.87248 0.90701 1.25590 1.02062 0.99022 1.00086 1.69824 1.46312 1.19721 1.25859 0.85135 0.76957 0.78313 0.79297 1.21338 1.22145 1.19486 0.88362 0.91343 0.90920 0.80716 0.81996 0.82751 0.85143 0.84668 0.74561 0.91256 0.90956 0.76669 0.95362 0.95039 0.78982 0.93956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.86 9.39 71.24 0.67 -1.19 16 2 C 0.12 2.60 6.78 42.54 0.29 2.89 16 3 N -0.52 -12.23 10.27 -183.88 -1.89 -14.12 16 4 C 0.08 1.53 11.18 84.69 0.95 2.48 16 5 C -0.18 -2.70 10.11 22.36 0.23 -2.48 16 6 C -0.07 -1.17 9.84 22.47 0.22 -0.95 16 7 C -0.13 -2.38 4.39 -19.78 -0.09 -2.47 16 8 C -0.09 -1.24 5.16 29.10 0.15 -1.09 16 9 C 0.51 10.72 7.03 87.66 0.62 11.34 16 10 O -0.58 -17.80 16.03 -3.04 -0.05 -17.84 16 11 N -0.71 -13.36 5.50 -463.07 -2.55 -15.91 16 12 C 0.10 2.40 5.31 86.38 0.46 2.86 16 13 C 0.11 3.05 3.09 30.59 0.09 3.15 16 14 H 0.10 2.94 8.14 -2.38 -0.02 2.92 16 15 O -0.56 -16.17 13.03 -148.98 -1.94 -18.12 16 16 C 0.12 4.47 5.92 86.38 0.51 4.98 16 17 N -0.74 -36.76 5.49 -343.46 -1.89 -38.64 16 18 C -0.25 -13.79 9.99 84.03 0.84 -12.95 16 19 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 20 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 21 N -0.97 -59.04 13.06 21.65 0.28 -58.75 16 22 Si 0.97 45.86 29.55 68.60 2.03 47.89 16 23 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 24 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 26 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.07 1.26 6.14 -2.39 -0.01 1.25 16 29 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 30 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 31 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 32 H 0.13 1.16 7.02 -2.39 -0.02 1.14 16 33 H 0.14 0.99 8.06 -2.39 -0.02 0.98 16 34 H 0.42 6.03 8.47 -92.71 -0.79 5.24 16 35 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.38 9.21 9.04 -74.06 -0.67 8.54 16 38 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.38 20.27 7.54 -92.71 -0.70 19.57 16 41 H 0.25 14.87 8.31 -92.72 -0.77 14.10 16 Total: -1.00 -77.19 351.56 -1.69 -78.87 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: -1.08 Total: 33.88 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 5.40 Total: 2.74 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -6.04 Total: -127.42 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -1.99 Total: -35.96 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -77.19 -1.69 -78.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753928164.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.885 kcal (2) G-P(sol) polarization free energy of solvation -77.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds