Wall clock time and date at job start Tue Mar 31 2020 04:27:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09004 * 109.46818 * 2 1
4 4 C 1.50700 * 109.47407 * 119.99764 * 2 1 3
5 5 O 1.21278 * 120.00548 * 119.99904 * 4 2 1
6 6 N 1.34782 * 119.99764 * 300.00097 * 4 2 1
7 7 C 1.46505 * 120.00001 * 179.97438 * 6 4 2
8 8 C 1.52997 * 109.47119 * 179.97438 * 7 6 4
9 9 H 1.09001 * 109.46922 * 305.00299 * 8 7 6
10 10 O 1.42905 * 109.46921 * 65.00030 * 8 7 6
11 11 C 1.52997 * 109.47232 * 185.00149 * 8 7 6
12 12 N 1.46500 * 109.47473 * 180.02562 * 11 8 7
13 13 C 1.36933 * 120.00568 * 180.02562 * 12 11 8
14 14 H 1.08006 * 119.99519 * 359.97438 * 13 12 11
15 15 C 1.38801 * 120.00407 * 179.97438 * 13 12 11
16 16 N 1.31619 * 120.00176 * 359.97438 * 15 13 12
17 17 Si 1.86804 * 120.00265 * 179.97438 * 15 13 12
18 18 H 1.48497 * 109.46862 * 59.99594 * 17 15 13
19 19 H 1.48492 * 109.47391 * 179.97438 * 17 15 13
20 20 H 1.48501 * 109.46920 * 300.00189 * 17 15 13
21 21 C 1.50701 * 109.47092 * 239.99603 * 2 1 3
22 22 C 1.38680 * 120.41319 * 119.72291 * 21 2 1
23 23 C 1.38627 * 118.41390 * 179.78311 * 22 21 2
24 24 C 1.38231 * 119.16419 * 0.50863 * 23 22 21
25 25 N 1.31853 * 120.75950 * 359.72858 * 24 23 22
26 26 C 1.31884 * 121.72795 * 359.97438 * 25 24 23
27 27 H 1.09001 * 109.47187 * 60.00363 * 1 2 3
28 28 H 1.09003 * 109.46799 * 180.02562 * 1 2 3
29 29 H 1.09004 * 109.47198 * 300.00255 * 1 2 3
30 30 H 0.97002 * 119.99790 * 359.97438 * 6 4 2
31 31 H 1.09000 * 109.46646 * 60.00028 * 7 6 4
32 32 H 1.08994 * 109.46912 * 300.00271 * 7 6 4
33 33 H 0.96696 * 114.00036 * 60.00010 * 10 8 7
34 34 H 1.09001 * 109.46832 * 300.00199 * 11 8 7
35 35 H 1.09002 * 109.47153 * 60.00008 * 11 8 7
36 36 H 0.97004 * 119.99396 * 359.97438 * 12 11 8
37 37 H 0.97001 * 120.00803 * 179.97438 * 16 15 13
38 38 H 1.07990 * 120.79412 * 0.02562 * 22 21 2
39 39 H 1.07997 * 120.41939 * 180.21925 * 23 22 21
40 40 H 1.08001 * 119.62062 * 179.74281 * 24 23 22
41 41 H 1.07998 * 119.61531 * 179.97438 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7103 1.2305
5 8 2.7296 -1.6964 1.1193
6 7 1.7068 -0.2498 2.4546
7 6 2.1947 -0.9406 3.6508
8 6 1.6853 -0.2189 4.9000
9 1 1.9744 0.8312 4.8562
10 8 0.2610 -0.3187 4.9603
11 6 2.2950 -0.8642 6.1461
12 7 1.8068 -0.1735 7.3423
13 6 2.2200 -0.5785 8.5834
14 1 2.9055 -1.4074 8.6804
15 6 1.7578 0.0763 9.7167
16 7 0.9228 1.0868 9.5984
17 14 2.3209 -0.4767 11.4098
18 1 3.7981 -0.3571 11.5037
19 1 1.6887 0.3790 12.4457
20 1 1.9241 -1.8913 11.6259
21 6 2.0323 -0.7105 -1.2304
22 6 2.8254 -0.0432 -2.1518
23 6 3.2683 -0.7381 -3.2666
24 6 2.8987 -2.0603 -3.4270
25 7 2.1390 -2.6614 -2.5325
26 6 1.7043 -2.0334 -1.4573
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3634 0.5139 0.8900
30 1 1.1494 0.5391 2.5435
31 1 3.2847 -0.9410 3.6509
32 1 1.8310 -1.9681 3.6507
33 1 -0.0682 -1.2270 5.0013
34 1 2.0059 -1.9142 6.1899
35 1 3.3814 -0.7880 6.1001
36 1 1.1914 0.5712 7.2550
37 1 0.5995 1.5442 10.3904
38 1 3.0947 0.9918 -2.0025
39 1 3.8905 -0.2511 -4.0029
40 1 3.2362 -2.6075 -4.2948
41 1 1.0834 -2.5588 -0.7468
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001753933951.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:27:30
Heat of formation + Delta-G solvation = -47.552570 kcal
Electronic energy + Delta-G solvation = -22592.555332 eV
Core-core repulsion = 19086.485515 eV
Total energy + Delta-G solvation = -3506.069817 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 293.153 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-40.87634 -39.55379 -37.68595 -34.89359 -34.46088 -34.01526 -32.39950 -31.34395
-30.19461 -28.90021 -25.82145 -24.93376 -23.80829 -23.04615 -22.09481 -21.45424
-20.08055 -17.69710 -17.40182 -17.16244 -16.72466 -16.24876 -15.96485 -15.67423
-14.91936 -14.80219 -14.49427 -14.17703 -14.07905 -13.74189 -13.61358 -13.33504
-13.11812 -12.96802 -12.75399 -12.56554 -12.34225 -11.95383 -11.78689 -11.67365
-10.98088 -10.82313 -10.65860 -10.22970 -10.18505 -9.95407 -9.81289 -9.66875
-9.51754 -9.20183 -9.16625 -8.92332 -6.96707 -5.78344 -3.08285 0.85150
1.04024 2.48017 3.00427 3.42768 3.47061 3.48215 3.62186 4.05820
4.34267 4.39721 4.51848 4.61398 4.64848 4.68926 4.76510 4.80862
4.86478 4.95283 5.20644 5.23589 5.31127 5.44452 5.53129 5.53872
5.57672 5.70374 5.77577 5.82292 5.91281 5.98595 6.16444 6.32624
6.44331 6.47710 6.63868 7.37244 7.65758 7.76146 7.89906 8.08580
8.39815 9.51452 10.07680 10.43631 11.43849
Molecular weight = 293.15amu
Principal moments of inertia in cm(-1)
A = 0.044937 B = 0.002357 C = 0.002311
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 622.940749 B =11876.444577 C =12113.779503
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.067 4.067
3 H 0.107 0.893
4 C 0.514 3.486
5 O -0.535 6.535
6 N -0.718 5.718
7 C 0.090 3.910
8 C 0.089 3.911
9 H 0.104 0.896
10 O -0.552 6.552
11 C 0.126 3.874
12 N -0.725 5.725
13 C -0.245 4.245
14 H 0.069 0.931
15 C -0.012 4.012
16 N -0.930 5.930
17 Si 0.909 3.091
18 H -0.286 1.286
19 H -0.291 1.291
20 H -0.286 1.286
21 C -0.118 4.118
22 C -0.069 4.069
23 C -0.176 4.176
24 C 0.095 3.905
25 N -0.486 5.486
26 C 0.134 3.866
27 H 0.070 0.930
28 H 0.065 0.935
29 H 0.071 0.929
30 H 0.405 0.595
31 H 0.077 0.923
32 H 0.072 0.928
33 H 0.374 0.626
34 H 0.023 0.977
35 H 0.028 0.972
36 H 0.389 0.611
37 H 0.256 0.744
38 H 0.133 0.867
39 H 0.134 0.866
40 H 0.154 0.846
41 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.368 -0.242 -26.219 26.223
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.089 4.089
3 H 0.125 0.875
4 C 0.299 3.701
5 O -0.412 6.412
6 N -0.370 5.370
7 C -0.035 4.035
8 C 0.030 3.970
9 H 0.122 0.878
10 O -0.357 6.357
11 C -0.002 4.002
12 N -0.371 5.371
13 C -0.376 4.376
14 H 0.087 0.913
15 C -0.208 4.208
16 N -0.578 5.578
17 Si 0.739 3.261
18 H -0.212 1.212
19 H -0.216 1.216
20 H -0.212 1.212
21 C -0.120 4.120
22 C -0.095 4.095
23 C -0.196 4.196
24 C -0.062 4.062
25 N -0.195 5.195
26 C -0.023 4.023
27 H 0.089 0.911
28 H 0.084 0.916
29 H 0.090 0.910
30 H 0.240 0.760
31 H 0.095 0.905
32 H 0.090 0.910
33 H 0.221 0.779
34 H 0.041 0.959
35 H 0.046 0.954
36 H 0.224 0.776
37 H 0.066 0.934
38 H 0.151 0.849
39 H 0.152 0.848
40 H 0.171 0.829
41 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges 0.764 -1.273 -26.291 26.333
hybrid contribution 0.252 0.668 1.211 1.405
sum 1.016 -0.605 -25.081 25.108
Atomic orbital electron populations
1.21828 0.91465 1.03403 1.03364 1.20229 0.98063 1.00257 0.90386
0.87485 1.20411 0.80414 0.84765 0.84465 1.90744 1.37581 1.26160
1.86688 1.45914 1.53524 1.32310 1.05251 1.22126 1.00237 0.96849
0.84263 1.22380 0.81524 1.00844 0.92293 0.87830 1.86570 1.19890
1.32624 1.96610 1.21192 0.96845 0.95345 0.86855 1.42219 1.55692
1.39015 1.00125 1.19169 1.22260 1.12516 0.83648 0.91273 1.24761
0.99827 0.98345 0.97901 1.69664 1.35864 1.23731 1.28567 0.86249
0.78028 0.77738 0.84036 1.21238 1.21637 1.21221 1.20328 0.99648
0.95993 0.96040 1.21467 0.94632 1.00161 0.93252 1.22088 1.02102
0.96332 0.99097 1.22787 0.93681 0.92317 0.97398 1.67724 1.10513
1.38476 1.02738 1.22514 0.95637 0.90866 0.93273 0.91144 0.91635
0.90967 0.75988 0.90463 0.90984 0.77900 0.95938 0.95412 0.77643
0.93406 0.84867 0.84797 0.82891 0.83195
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.93 8.91 37.16 0.33 -0.60 16
2 C -0.07 -0.55 2.92 -92.92 -0.27 -0.82 16
3 H 0.11 0.65 7.93 -51.93 -0.41 0.24 16
4 C 0.51 5.88 7.03 -10.98 -0.08 5.81 16
5 O -0.54 -8.30 15.12 5.56 0.08 -8.22 16
6 N -0.72 -7.57 5.40 -60.29 -0.33 -7.90 16
7 C 0.09 1.12 5.31 -4.04 -0.02 1.09 16
8 C 0.09 1.31 3.09 -26.73 -0.08 1.23 16
9 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16
10 O -0.55 -8.34 13.03 -35.23 -0.46 -8.79 16
11 C 0.13 2.40 5.92 -4.04 -0.02 2.38 16
12 N -0.73 -18.15 5.49 -59.91 -0.33 -18.48 16
13 C -0.24 -6.84 9.99 -15.07 -0.15 -6.99 16
14 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16
15 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16
16 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16
17 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16
18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
21 C -0.12 -1.14 4.40 -104.48 -0.46 -1.60 16
22 C -0.07 -0.57 9.81 -39.27 -0.39 -0.95 16
23 C -0.18 -1.37 10.11 -39.44 -0.40 -1.77 16
24 C 0.09 0.88 11.18 -17.55 -0.20 0.68 16
25 N -0.49 -5.82 10.36 -13.26 -0.14 -5.96 16
26 C 0.13 1.54 9.12 -17.55 -0.16 1.38 16
27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16
28 H 0.06 0.47 7.42 -51.93 -0.39 0.08 16
29 H 0.07 0.41 7.57 -51.93 -0.39 0.02 16
30 H 0.40 3.57 7.89 -40.82 -0.32 3.25 16
31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16
32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16
33 H 0.37 4.74 9.05 45.56 0.41 5.15 16
34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16
36 H 0.39 10.40 7.54 -40.82 -0.31 10.09 16
37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16
38 H 0.13 0.75 8.00 -52.49 -0.42 0.33 16
39 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16
40 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16
41 H 0.15 1.69 7.53 -52.49 -0.40 1.29 16
LS Contribution 350.66 15.07 5.28 5.28
Total: -1.00 -35.10 350.66 -7.32 -42.43
By element:
Atomic # 1 Polarization: 17.51 SS G_CDS: -5.15 Total: 12.36 kcal
Atomic # 6 Polarization: 1.38 SS G_CDS: -1.99 Total: -0.61 kcal
Atomic # 7 Polarization: -59.71 SS G_CDS: -0.07 Total: -59.78 kcal
Atomic # 8 Polarization: -16.64 SS G_CDS: -0.37 Total: -17.01 kcal
Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal
Total LS contribution 5.28 Total: 5.28 kcal
Total: -35.10 -7.32 -42.43 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001753933951.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.126 kcal
(2) G-P(sol) polarization free energy of solvation -35.102 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.228 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.553 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds