Wall clock time and date at job start Tue Mar 31 2020 04:27:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09004 * 109.46818 * 2 1
4 4 C 1.50700 * 109.47407 * 119.99764 * 2 1 3
5 5 O 1.21278 * 120.00548 * 119.99904 * 4 2 1
6 6 N 1.34782 * 119.99764 * 300.00097 * 4 2 1
7 7 C 1.46505 * 120.00001 * 179.97438 * 6 4 2
8 8 C 1.52997 * 109.47119 * 179.97438 * 7 6 4
9 9 H 1.09001 * 109.46922 * 305.00299 * 8 7 6
10 10 O 1.42905 * 109.46921 * 65.00030 * 8 7 6
11 11 C 1.52997 * 109.47232 * 185.00149 * 8 7 6
12 12 N 1.46500 * 109.47473 * 180.02562 * 11 8 7
13 13 C 1.36933 * 120.00568 * 180.02562 * 12 11 8
14 14 H 1.08006 * 119.99519 * 359.97438 * 13 12 11
15 15 C 1.38801 * 120.00407 * 179.97438 * 13 12 11
16 16 N 1.31619 * 120.00176 * 359.97438 * 15 13 12
17 17 Si 1.86804 * 120.00265 * 179.97438 * 15 13 12
18 18 H 1.48497 * 109.46862 * 59.99594 * 17 15 13
19 19 H 1.48492 * 109.47391 * 179.97438 * 17 15 13
20 20 H 1.48501 * 109.46920 * 300.00189 * 17 15 13
21 21 C 1.50701 * 109.47092 * 239.99603 * 2 1 3
22 22 C 1.38680 * 120.41319 * 119.72291 * 21 2 1
23 23 C 1.38627 * 118.41390 * 179.78311 * 22 21 2
24 24 C 1.38231 * 119.16419 * 0.50863 * 23 22 21
25 25 N 1.31853 * 120.75950 * 359.72858 * 24 23 22
26 26 C 1.31884 * 121.72795 * 359.97438 * 25 24 23
27 27 H 1.09001 * 109.47187 * 60.00363 * 1 2 3
28 28 H 1.09003 * 109.46799 * 180.02562 * 1 2 3
29 29 H 1.09004 * 109.47198 * 300.00255 * 1 2 3
30 30 H 0.97002 * 119.99790 * 359.97438 * 6 4 2
31 31 H 1.09000 * 109.46646 * 60.00028 * 7 6 4
32 32 H 1.08994 * 109.46912 * 300.00271 * 7 6 4
33 33 H 0.96696 * 114.00036 * 60.00010 * 10 8 7
34 34 H 1.09001 * 109.46832 * 300.00199 * 11 8 7
35 35 H 1.09002 * 109.47153 * 60.00008 * 11 8 7
36 36 H 0.97004 * 119.99396 * 359.97438 * 12 11 8
37 37 H 0.97001 * 120.00803 * 179.97438 * 16 15 13
38 38 H 1.07990 * 120.79412 * 0.02562 * 22 21 2
39 39 H 1.07997 * 120.41939 * 180.21925 * 23 22 21
40 40 H 1.08001 * 119.62062 * 179.74281 * 24 23 22
41 41 H 1.07998 * 119.61531 * 179.97438 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7103 1.2305
5 8 2.7296 -1.6964 1.1193
6 7 1.7068 -0.2498 2.4546
7 6 2.1947 -0.9406 3.6508
8 6 1.6853 -0.2189 4.9000
9 1 1.9744 0.8312 4.8562
10 8 0.2610 -0.3187 4.9603
11 6 2.2950 -0.8642 6.1461
12 7 1.8068 -0.1735 7.3423
13 6 2.2200 -0.5785 8.5834
14 1 2.9055 -1.4074 8.6804
15 6 1.7578 0.0763 9.7167
16 7 0.9228 1.0868 9.5984
17 14 2.3209 -0.4767 11.4098
18 1 3.7981 -0.3571 11.5037
19 1 1.6887 0.3790 12.4457
20 1 1.9241 -1.8913 11.6259
21 6 2.0323 -0.7105 -1.2304
22 6 2.8254 -0.0432 -2.1518
23 6 3.2683 -0.7381 -3.2666
24 6 2.8987 -2.0603 -3.4270
25 7 2.1390 -2.6614 -2.5325
26 6 1.7043 -2.0334 -1.4573
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3634 0.5139 0.8900
30 1 1.1494 0.5391 2.5435
31 1 3.2847 -0.9410 3.6509
32 1 1.8310 -1.9681 3.6507
33 1 -0.0682 -1.2270 5.0013
34 1 2.0059 -1.9142 6.1899
35 1 3.3814 -0.7880 6.1001
36 1 1.1914 0.5712 7.2550
37 1 0.5995 1.5442 10.3904
38 1 3.0947 0.9918 -2.0025
39 1 3.8905 -0.2511 -4.0029
40 1 3.2362 -2.6075 -4.2948
41 1 1.0834 -2.5588 -0.7468
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001753933951.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:27:30
Heat of formation + Delta-G solvation = -75.898640 kcal
Electronic energy + Delta-G solvation = -22593.784510 eV
Core-core repulsion = 19086.485515 eV
Total energy + Delta-G solvation = -3507.298995 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 293.153 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-41.64056 -40.42449 -38.93473 -36.07832 -35.63955 -35.26997 -33.20606 -33.03604
-31.11111 -30.11363 -27.21039 -25.83985 -24.59872 -24.44631 -23.10626 -22.75647
-20.97837 -19.25302 -18.50084 -18.07814 -17.72581 -17.24246 -16.95485 -16.71406
-16.41516 -15.86985 -15.60590 -15.46862 -14.97311 -14.84025 -14.71513 -14.44013
-14.15823 -13.95223 -13.92740 -13.56188 -13.28878 -13.17727 -12.95600 -12.72600
-12.45455 -12.29760 -12.20672 -11.97386 -11.80613 -11.14469 -10.97640 -10.85797
-10.60971 -10.37636 -10.13172 -9.89441 -9.01664 -7.95246 -5.24813 0.17315
0.38308 1.47476 1.50323 1.56577 1.59844 2.11304 2.55911 2.91379
3.35639 3.41450 3.46466 3.60565 3.66490 3.76885 3.98641 4.05000
4.06474 4.14974 4.20570 4.23292 4.40271 4.42347 4.61518 4.64966
4.72442 4.81493 4.89300 4.92202 4.92764 5.20243 5.20710 5.22066
5.34695 5.37697 5.47392 5.80338 6.25857 6.52037 6.79312 7.05850
7.21568 7.33217 8.08478 8.32033 9.27578
Molecular weight = 293.15amu
Principal moments of inertia in cm(-1)
A = 0.044937 B = 0.002357 C = 0.002311
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 622.940749 B =11876.444577 C =12113.779503
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.058 4.058
3 H 0.137 0.863
4 C 0.514 3.486
5 O -0.580 6.580
6 N -0.708 5.708
7 C 0.103 3.897
8 C 0.110 3.890
9 H 0.104 0.896
10 O -0.561 6.561
11 C 0.121 3.879
12 N -0.739 5.739
13 C -0.250 4.250
14 H 0.075 0.925
15 C -0.075 4.075
16 N -0.967 5.967
17 Si 0.975 3.025
18 H -0.278 1.278
19 H -0.295 1.295
20 H -0.278 1.278
21 C -0.127 4.127
22 C -0.073 4.073
23 C -0.171 4.171
24 C 0.078 3.922
25 N -0.522 5.522
26 C 0.109 3.891
27 H 0.085 0.915
28 H 0.052 0.948
29 H 0.082 0.918
30 H 0.416 0.584
31 H 0.073 0.927
32 H 0.070 0.930
33 H 0.384 0.616
34 H 0.028 0.972
35 H 0.032 0.968
36 H 0.378 0.622
37 H 0.252 0.748
38 H 0.164 0.836
39 H 0.167 0.833
40 H 0.175 0.825
41 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.029 0.644 -27.420 27.447
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.080 4.080
3 H 0.155 0.845
4 C 0.301 3.699
5 O -0.459 6.459
6 N -0.360 5.360
7 C -0.023 4.023
8 C 0.050 3.950
9 H 0.122 0.878
10 O -0.368 6.368
11 C -0.007 4.007
12 N -0.382 5.382
13 C -0.382 4.382
14 H 0.093 0.907
15 C -0.267 4.267
16 N -0.617 5.617
17 Si 0.803 3.197
18 H -0.204 1.204
19 H -0.221 1.221
20 H -0.204 1.204
21 C -0.129 4.129
22 C -0.099 4.099
23 C -0.190 4.190
24 C -0.078 4.078
25 N -0.231 5.231
26 C -0.047 4.047
27 H 0.104 0.896
28 H 0.071 0.929
29 H 0.101 0.899
30 H 0.253 0.747
31 H 0.091 0.909
32 H 0.088 0.912
33 H 0.233 0.767
34 H 0.046 0.954
35 H 0.050 0.950
36 H 0.210 0.790
37 H 0.061 0.939
38 H 0.182 0.818
39 H 0.185 0.815
40 H 0.192 0.808
41 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges 1.424 -0.401 -27.518 27.558
hybrid contribution 0.082 0.345 1.478 1.520
sum 1.506 -0.056 -26.040 26.084
Atomic orbital electron populations
1.21830 0.90216 1.03030 1.04626 1.20263 0.98938 1.00891 0.87865
0.84520 1.21005 0.79455 0.84165 0.85290 1.90731 1.39701 1.28208
1.87290 1.45791 1.53311 1.32391 1.04544 1.21823 0.99826 0.96553
0.84051 1.22078 0.81178 1.00549 0.91219 0.87849 1.86550 1.19909
1.33764 1.96546 1.21407 0.97112 0.95402 0.86737 1.42391 1.55579
1.39122 1.01139 1.19592 1.21504 1.12075 0.85033 0.90728 1.25590
1.00588 0.98887 1.01652 1.69820 1.37552 1.25197 1.29130 0.85203
0.77751 0.77343 0.79390 1.20374 1.22086 1.20406 1.20494 0.99988
0.95467 0.96951 1.21903 0.93613 1.01574 0.92769 1.22477 1.01399
0.95659 0.99453 1.23273 0.93388 0.93528 0.97597 1.67653 1.11944
1.39834 1.03672 1.22463 0.96742 0.92014 0.93526 0.89637 0.92895
0.89882 0.74664 0.90908 0.91199 0.76679 0.95369 0.95037 0.78977
0.93944 0.81802 0.81512 0.80767 0.84602
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.56 8.91 71.98 0.64 -0.92 16
2 C -0.06 -0.83 2.92 -12.29 -0.04 -0.87 16
3 H 0.14 1.16 7.93 -2.39 -0.02 1.14 16
4 C 0.51 11.21 7.03 87.66 0.62 11.82 16
5 O -0.58 -18.02 15.12 -3.02 -0.05 -18.06 16
6 N -0.71 -13.85 5.40 -463.06 -2.50 -16.35 16
7 C 0.10 2.44 5.31 86.38 0.46 2.90 16
8 C 0.11 3.09 3.09 30.59 0.09 3.19 16
9 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16
10 O -0.56 -16.32 13.03 -148.98 -1.94 -18.26 16
11 C 0.12 4.51 5.92 86.38 0.51 5.02 16
12 N -0.74 -36.89 5.49 -343.46 -1.89 -38.77 16
13 C -0.25 -13.91 9.99 84.03 0.84 -13.08 16
14 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16
15 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16
16 N -0.97 -59.11 13.06 21.65 0.28 -58.83 16
17 Si 0.97 45.94 29.55 68.60 2.03 47.97 16
18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16
19 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16
20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16
21 C -0.13 -2.30 4.40 -19.77 -0.09 -2.39 16
22 C -0.07 -1.01 9.81 22.47 0.22 -0.79 16
23 C -0.17 -2.23 10.11 22.36 0.23 -2.00 16
24 C 0.08 1.38 11.18 84.69 0.95 2.32 16
25 N -0.52 -12.73 10.36 -195.85 -2.03 -14.76 16
26 C 0.11 2.56 9.12 84.67 0.77 3.33 16
27 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16
28 H 0.05 0.73 7.42 -2.39 -0.02 0.71 16
29 H 0.08 0.75 7.57 -2.38 -0.02 0.73 16
30 H 0.42 6.41 7.89 -92.71 -0.73 5.67 16
31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16
32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16
33 H 0.38 9.34 9.05 -74.06 -0.67 8.67 16
34 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16
35 H 0.03 1.17 8.14 -2.39 -0.02 1.16 16
36 H 0.38 20.33 7.54 -92.71 -0.70 19.63 16
37 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16
38 H 0.16 1.17 8.00 -2.92 -0.02 1.15 16
39 H 0.17 1.00 8.06 -2.91 -0.02 0.97 16
40 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16
41 H 0.14 3.33 7.53 -2.91 -0.02 3.31 16
Total: -1.00 -76.51 350.66 -1.46 -77.96
By element:
Atomic # 1 Polarization: 35.41 SS G_CDS: -1.04 Total: 34.37 kcal
Atomic # 6 Polarization: -0.94 SS G_CDS: 5.67 Total: 4.73 kcal
Atomic # 7 Polarization: -122.59 SS G_CDS: -6.13 Total: -128.72 kcal
Atomic # 8 Polarization: -34.33 SS G_CDS: -1.99 Total: -36.32 kcal
Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal
Total: -76.51 -1.46 -77.96 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001753933951.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.064 kcal
(2) G-P(sol) polarization free energy of solvation -76.507 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.442 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.456 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.963 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.899 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds