Wall clock time and date at job start Tue Mar 31 2020 04:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47020 * 2 1 4 4 C 1.53003 * 109.46817 * 119.99559 * 2 1 3 5 5 N 1.46502 * 109.46638 * 175.00220 * 4 2 1 6 6 C 1.46508 * 120.00275 * 269.99981 * 5 4 2 7 7 C 1.36942 * 120.00165 * 90.00371 * 5 4 2 8 8 H 1.07997 * 119.99692 * 19.90257 * 7 5 4 9 9 C 1.38808 * 120.00185 * 199.90446 * 7 5 4 10 10 N 1.31618 * 119.99935 * 15.79787 * 9 7 5 11 11 Si 1.86793 * 120.00152 * 195.79696 * 9 7 5 12 12 H 1.48508 * 109.46981 * 94.97600 * 11 9 7 13 13 H 1.48499 * 109.47298 * 214.97699 * 11 9 7 14 14 H 1.48505 * 109.47253 * 334.98124 * 11 9 7 15 15 N 1.46502 * 109.47376 * 239.99806 * 2 1 3 16 16 C 1.34779 * 119.99781 * 85.00236 * 15 2 1 17 17 O 1.21542 * 120.00026 * 359.97438 * 16 15 2 18 18 C 1.47882 * 119.99517 * 180.27754 * 16 15 2 19 19 C 1.36292 * 119.75912 * 352.60497 * 18 16 15 20 20 C 1.40406 * 119.90524 * 180.02562 * 19 18 16 21 21 C 1.36108 * 119.41594 * 359.97438 * 20 19 18 22 22 C 1.41239 * 119.51207 * 0.02562 * 21 20 19 23 23 O 1.21965 * 119.95646 * 180.02562 * 22 21 20 24 24 N 1.34678 * 120.08528 * 359.71716 * 22 21 20 25 25 C 1.46495 * 119.70055 * 180.27261 * 24 22 21 26 26 H 1.09005 * 109.46968 * 60.00318 * 1 2 3 27 27 H 1.09001 * 109.47020 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47501 * 299.99947 * 1 2 3 29 29 H 1.08999 * 109.47397 * 294.99989 * 4 2 1 30 30 H 1.08998 * 109.47414 * 55.00961 * 4 2 1 31 31 H 1.08998 * 109.46810 * 94.35198 * 6 5 4 32 32 H 1.08993 * 109.47085 * 214.36066 * 6 5 4 33 33 H 1.09005 * 109.46382 * 334.35757 * 6 5 4 34 34 H 0.97003 * 119.99944 * 179.97438 * 10 9 7 35 35 H 0.97000 * 120.00063 * 264.99641 * 15 2 1 36 36 H 1.07995 * 120.04857 * 359.97438 * 19 18 16 37 37 H 1.07999 * 120.28971 * 180.02562 * 20 19 18 38 38 H 1.08006 * 120.24433 * 179.97438 * 21 20 19 39 39 H 1.08992 * 109.47504 * 264.66271 * 25 24 22 40 40 H 1.08997 * 109.47592 * 24.67488 * 25 24 22 41 41 H 1.09009 * 109.46747 * 144.66575 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8262 1.1907 6 6 4.1259 -1.9919 0.5613 7 6 4.2799 0.1650 1.7241 8 1 3.8648 0.8451 2.4532 9 6 5.6037 0.2957 1.3278 10 7 6.0269 -0.3081 0.2375 11 14 6.7846 1.3284 2.3417 12 1 7.5236 0.4520 3.2857 13 1 7.7486 2.0077 1.4391 14 1 6.0206 2.3466 3.1064 15 7 2.0184 -0.6906 -1.1961 16 6 2.1472 -0.0183 -2.3571 17 8 1.8577 1.1609 -2.4118 18 6 2.6344 -0.7170 -3.5660 19 6 3.0942 -1.9963 -3.4688 20 6 3.5579 -2.6624 -4.6145 21 6 3.5421 -2.0193 -5.8140 22 6 3.0603 -0.6936 -5.8865 23 8 3.0420 -0.1099 -6.9572 24 7 2.6153 -0.0754 -4.7758 25 6 2.1119 1.2976 -4.8616 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.7516 -0.1582 2.1370 30 1 1.6055 -1.7198 1.2953 31 1 4.3504 -1.7652 -0.4809 32 1 5.0488 -2.2367 1.0869 33 1 3.4439 -2.8408 0.6099 34 1 6.9520 -0.2165 -0.0397 35 1 2.2492 -1.6318 -1.1525 36 1 3.1026 -2.4967 -2.5118 37 1 3.9233 -3.6763 -4.5447 38 1 3.8960 -2.5189 -6.7038 39 1 2.9115 1.9943 -4.6100 40 1 1.7641 1.4944 -5.8757 41 1 1.2851 1.4258 -4.1628 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754325613.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:48 Heat of formation + Delta-G solvation = -0.043787 kcal Electronic energy + Delta-G solvation = -24512.373767 eV Core-core repulsion = 21008.364086 eV Total energy + Delta-G solvation = -3504.009681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.42376 -39.35805 -36.87076 -36.42550 -34.71398 -33.95784 -31.89207 -30.71713 -29.31568 -27.47519 -26.31970 -25.73659 -24.82126 -22.61509 -22.08736 -20.85182 -20.21894 -17.87489 -17.27449 -16.98509 -16.76933 -16.12310 -15.67796 -15.35620 -14.96163 -14.59776 -14.52837 -13.84700 -13.79825 -13.34220 -13.10884 -12.90173 -12.70825 -12.38401 -12.27260 -12.22217 -11.90269 -11.63797 -11.55597 -11.22681 -10.95396 -10.86061 -10.65151 -10.34115 -10.11211 -10.06706 -10.04139 -9.93016 -9.43017 -8.79784 -8.55926 -7.96333 -6.90227 -5.82506 -3.24912 0.51404 1.71924 2.56421 3.03632 3.34219 3.39800 3.41992 3.42999 3.75496 4.43592 4.58538 4.63757 4.87851 5.16435 5.22506 5.23811 5.35564 5.53550 5.57285 5.61849 5.68578 5.83755 5.86651 5.94879 5.97717 6.02868 6.07945 6.19222 6.32748 6.37397 6.41380 6.48776 6.69535 6.86673 7.07823 7.19714 7.51149 7.72265 7.73363 8.04294 8.27656 8.35651 9.12883 9.75997 10.21831 11.23245 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015522 B = 0.005225 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.480657 B = 5357.866482 C = 5963.046675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.115 3.885 3 H 0.090 0.910 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.158 3.842 7 C -0.258 4.258 8 H 0.070 0.930 9 C 0.005 3.995 10 N -0.903 5.903 11 Si 0.903 3.097 12 H -0.288 1.288 13 H -0.292 1.292 14 H -0.279 1.279 15 N -0.676 5.676 16 C 0.557 3.443 17 O -0.532 6.532 18 C 0.130 3.870 19 C -0.182 4.182 20 C -0.020 4.020 21 C -0.228 4.228 22 C 0.512 3.488 23 O -0.557 6.557 24 N -0.474 5.474 25 C 0.053 3.947 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.030 0.970 32 H 0.046 0.954 33 H -0.004 1.004 34 H 0.252 0.748 35 H 0.399 0.601 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.150 0.850 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.317 -6.471 -4.741 12.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.008 3.992 3 H 0.109 0.891 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.013 3.987 7 C -0.388 4.388 8 H 0.088 0.912 9 C -0.194 4.194 10 N -0.547 5.547 11 Si 0.733 3.267 12 H -0.216 1.216 13 H -0.219 1.219 14 H -0.205 1.205 15 N -0.326 5.326 16 C 0.341 3.659 17 O -0.411 6.411 18 C 0.018 3.982 19 C -0.207 4.207 20 C -0.042 4.042 21 C -0.250 4.250 22 C 0.313 3.687 23 O -0.440 6.440 24 N -0.185 5.185 25 C -0.087 4.087 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.015 0.985 34 H 0.062 0.938 35 H 0.235 0.765 36 H 0.167 0.833 37 H 0.160 0.840 38 H 0.168 0.832 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.374 -5.201 -5.484 12.041 hybrid contribution 1.144 0.115 0.498 1.253 sum -8.229 -5.087 -4.986 10.884 Atomic orbital electron populations 1.22159 0.96337 1.01401 1.01992 1.22066 0.91988 0.99387 0.85729 0.89144 1.21217 0.85789 0.97429 0.94212 1.43947 0.99032 1.20899 1.68078 1.20894 0.94915 0.85075 0.97791 1.19189 0.92690 1.09642 1.17262 0.91207 1.24920 0.98563 0.99413 0.96463 1.70054 1.15858 1.46933 1.21869 0.86263 0.81143 0.79784 0.79505 1.21552 1.21874 1.20460 1.45684 1.64324 1.13913 1.08633 1.17708 0.78636 0.86460 0.83047 1.90717 1.50922 1.15069 1.84354 1.20277 0.98357 0.92900 0.86665 1.20924 1.05630 0.93423 1.00678 1.21399 0.91531 0.99844 0.91434 1.22315 1.08103 0.94553 1.00046 1.17324 0.80181 0.88176 0.82991 1.90910 1.58535 1.67969 1.26635 1.45402 1.50668 1.15833 1.06565 1.22549 1.02414 0.79342 1.04418 0.92890 0.92941 0.91684 0.91870 0.93745 0.95168 0.93480 0.98522 0.93786 0.76462 0.83263 0.84020 0.83184 0.90522 0.89882 0.86996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.48 37.16 0.35 -1.71 16 2 C 0.12 1.89 2.88 -67.93 -0.20 1.70 16 3 H 0.09 1.83 7.58 -51.93 -0.39 1.43 16 4 C 0.14 2.44 5.33 -4.04 -0.02 2.42 16 5 N -0.60 -13.16 2.78 -181.11 -0.50 -13.67 16 6 C 0.16 3.32 7.62 59.85 0.46 3.78 16 7 C -0.26 -6.60 9.68 -15.06 -0.15 -6.75 16 8 H 0.07 1.77 7.86 -52.49 -0.41 1.36 16 9 C 0.01 0.14 5.04 -17.43 -0.09 0.05 16 10 N -0.90 -24.79 10.69 55.49 0.59 -24.19 16 11 Si 0.90 21.35 29.58 -169.99 -5.03 16.32 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 N -0.68 -10.76 4.35 -54.74 -0.24 -10.99 16 16 C 0.56 9.59 7.60 -12.31 -0.09 9.50 16 17 O -0.53 -10.32 12.87 5.33 0.07 -10.25 16 18 C 0.13 2.02 6.63 -82.33 -0.55 1.47 16 19 C -0.18 -2.35 9.48 -39.47 -0.37 -2.73 16 20 C -0.02 -0.23 10.08 -39.53 -0.40 -0.63 16 21 C -0.23 -3.00 10.00 -39.21 -0.39 -3.40 16 22 C 0.51 8.55 7.43 -15.16 -0.11 8.44 16 23 O -0.56 -10.87 16.56 4.95 0.08 -10.78 16 24 N -0.47 -7.73 3.02 -122.81 -0.37 -8.10 16 25 C 0.05 0.83 9.13 59.84 0.55 1.37 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.06 1.07 8.03 -51.93 -0.42 0.65 16 30 H 0.04 0.66 7.86 -51.93 -0.41 0.25 16 31 H 0.03 0.67 6.98 -51.93 -0.36 0.31 16 32 H 0.05 1.12 7.15 -51.93 -0.37 0.75 16 33 H 0.00 -0.06 7.84 -51.93 -0.41 -0.47 16 34 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.40 5.67 5.19 -40.82 -0.21 5.45 16 36 H 0.15 1.68 6.36 -52.49 -0.33 1.35 16 37 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 38 H 0.15 1.66 8.06 -52.48 -0.42 1.24 16 39 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.08 1.22 7.24 -51.93 -0.38 0.84 16 41 H 0.11 1.72 5.61 -51.92 -0.29 1.43 16 LS Contribution 336.28 15.07 5.07 5.07 Total: -1.00 -31.87 336.28 -7.00 -38.87 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -5.66 Total: 4.20 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: -1.01 Total: 13.53 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.52 Total: -56.95 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: 0.15 Total: -21.03 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.87 -7.00 -38.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754325613.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.825 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds