Wall clock time and date at job start Tue Mar 31 2020 04:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47020 * 2 1 4 4 C 1.53003 * 109.46817 * 119.99559 * 2 1 3 5 5 N 1.46502 * 109.46638 * 175.00220 * 4 2 1 6 6 C 1.46508 * 120.00275 * 269.99981 * 5 4 2 7 7 C 1.36942 * 120.00165 * 90.00371 * 5 4 2 8 8 H 1.07997 * 119.99692 * 19.90257 * 7 5 4 9 9 C 1.38808 * 120.00185 * 199.90446 * 7 5 4 10 10 N 1.31618 * 119.99935 * 15.79787 * 9 7 5 11 11 Si 1.86793 * 120.00152 * 195.79696 * 9 7 5 12 12 H 1.48508 * 109.46981 * 94.97600 * 11 9 7 13 13 H 1.48499 * 109.47298 * 214.97699 * 11 9 7 14 14 H 1.48505 * 109.47253 * 334.98124 * 11 9 7 15 15 N 1.46502 * 109.47376 * 239.99806 * 2 1 3 16 16 C 1.34779 * 119.99781 * 85.00236 * 15 2 1 17 17 O 1.21542 * 120.00026 * 359.97438 * 16 15 2 18 18 C 1.47882 * 119.99517 * 180.27754 * 16 15 2 19 19 C 1.36292 * 119.75912 * 352.60497 * 18 16 15 20 20 C 1.40406 * 119.90524 * 180.02562 * 19 18 16 21 21 C 1.36108 * 119.41594 * 359.97438 * 20 19 18 22 22 C 1.41239 * 119.51207 * 0.02562 * 21 20 19 23 23 O 1.21965 * 119.95646 * 180.02562 * 22 21 20 24 24 N 1.34678 * 120.08528 * 359.71716 * 22 21 20 25 25 C 1.46495 * 119.70055 * 180.27261 * 24 22 21 26 26 H 1.09005 * 109.46968 * 60.00318 * 1 2 3 27 27 H 1.09001 * 109.47020 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47501 * 299.99947 * 1 2 3 29 29 H 1.08999 * 109.47397 * 294.99989 * 4 2 1 30 30 H 1.08998 * 109.47414 * 55.00961 * 4 2 1 31 31 H 1.08998 * 109.46810 * 94.35198 * 6 5 4 32 32 H 1.08993 * 109.47085 * 214.36066 * 6 5 4 33 33 H 1.09005 * 109.46382 * 334.35757 * 6 5 4 34 34 H 0.97003 * 119.99944 * 179.97438 * 10 9 7 35 35 H 0.97000 * 120.00063 * 264.99641 * 15 2 1 36 36 H 1.07995 * 120.04857 * 359.97438 * 19 18 16 37 37 H 1.07999 * 120.28971 * 180.02562 * 20 19 18 38 38 H 1.08006 * 120.24433 * 179.97438 * 21 20 19 39 39 H 1.08992 * 109.47504 * 264.66271 * 25 24 22 40 40 H 1.08997 * 109.47592 * 24.67488 * 25 24 22 41 41 H 1.09009 * 109.46747 * 144.66575 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8262 1.1907 6 6 4.1259 -1.9919 0.5613 7 6 4.2799 0.1650 1.7241 8 1 3.8648 0.8451 2.4532 9 6 5.6037 0.2957 1.3278 10 7 6.0269 -0.3081 0.2375 11 14 6.7846 1.3284 2.3417 12 1 7.5236 0.4520 3.2857 13 1 7.7486 2.0077 1.4391 14 1 6.0206 2.3466 3.1064 15 7 2.0184 -0.6906 -1.1961 16 6 2.1472 -0.0183 -2.3571 17 8 1.8577 1.1609 -2.4118 18 6 2.6344 -0.7170 -3.5660 19 6 3.0942 -1.9963 -3.4688 20 6 3.5579 -2.6624 -4.6145 21 6 3.5421 -2.0193 -5.8140 22 6 3.0603 -0.6936 -5.8865 23 8 3.0420 -0.1099 -6.9572 24 7 2.6153 -0.0754 -4.7758 25 6 2.1119 1.2976 -4.8616 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.7516 -0.1582 2.1370 30 1 1.6055 -1.7198 1.2953 31 1 4.3504 -1.7652 -0.4809 32 1 5.0488 -2.2367 1.0869 33 1 3.4439 -2.8408 0.6099 34 1 6.9520 -0.2165 -0.0397 35 1 2.2492 -1.6318 -1.1525 36 1 3.1026 -2.4967 -2.5118 37 1 3.9233 -3.6763 -4.5447 38 1 3.8960 -2.5189 -6.7038 39 1 2.9115 1.9943 -4.6100 40 1 1.7641 1.4944 -5.8757 41 1 1.2851 1.4258 -4.1628 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754325613.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:47 Heat of formation + Delta-G solvation = -20.980035 kcal Electronic energy + Delta-G solvation = -24513.281631 eV Core-core repulsion = 21008.364086 eV Total energy + Delta-G solvation = -3504.917545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.62776 -40.67924 -38.28561 -37.76611 -36.13585 -35.28014 -33.37028 -32.33323 -30.51567 -28.68168 -27.93111 -27.37234 -26.01651 -23.83221 -23.52771 -22.31462 -21.56911 -19.14326 -18.74368 -18.43796 -18.02131 -17.38197 -17.01395 -16.85207 -16.52904 -15.95033 -15.59350 -15.46939 -15.24127 -14.97570 -14.52989 -14.23676 -13.93477 -13.70452 -13.49536 -13.35323 -13.15654 -13.04392 -12.81072 -12.80025 -12.63283 -12.51598 -12.25535 -11.97921 -11.81049 -11.68128 -11.40313 -11.15363 -10.75395 -10.58544 -10.05081 -9.15109 -8.72489 -7.80538 -5.21054 -0.60288 0.60384 1.37697 1.44691 1.47872 1.53822 1.75204 2.15955 2.53107 2.60047 3.33172 3.39986 3.56574 3.75080 3.88215 4.11588 4.18461 4.24036 4.32208 4.41754 4.43663 4.53950 4.69807 4.81825 4.85861 4.89400 4.95026 4.97676 5.05385 5.16407 5.20224 5.37702 5.41203 5.45273 5.59233 5.69136 5.84782 5.89680 6.36396 6.45862 6.81621 7.08954 7.21460 7.94952 8.32326 9.21687 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015522 B = 0.005225 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.480657 B = 5357.866482 C = 5963.046675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.122 3.878 3 H 0.044 0.956 4 C 0.141 3.859 5 N -0.612 5.612 6 C 0.167 3.833 7 C -0.254 4.254 8 H 0.067 0.933 9 C -0.048 4.048 10 N -0.925 5.925 11 Si 0.951 3.049 12 H -0.287 1.287 13 H -0.305 1.305 14 H -0.273 1.273 15 N -0.669 5.669 16 C 0.551 3.449 17 O -0.565 6.565 18 C 0.096 3.904 19 C -0.158 4.158 20 C -0.003 4.003 21 C -0.230 4.230 22 C 0.494 3.506 23 O -0.600 6.600 24 N -0.481 5.481 25 C 0.060 3.940 26 H 0.041 0.959 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.017 0.983 32 H 0.011 0.989 33 H 0.043 0.957 34 H 0.243 0.757 35 H 0.409 0.591 36 H 0.172 0.828 37 H 0.192 0.808 38 H 0.173 0.827 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.287 -9.153 -3.915 14.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.015 3.985 3 H 0.062 0.938 4 C 0.014 3.986 5 N -0.334 5.334 6 C 0.023 3.977 7 C -0.385 4.385 8 H 0.085 0.915 9 C -0.243 4.243 10 N -0.572 5.572 11 Si 0.781 3.219 12 H -0.214 1.214 13 H -0.233 1.233 14 H -0.198 1.198 15 N -0.319 5.319 16 C 0.337 3.663 17 O -0.447 6.447 18 C -0.014 4.014 19 C -0.182 4.182 20 C -0.024 4.024 21 C -0.252 4.252 22 C 0.298 3.702 23 O -0.487 6.487 24 N -0.192 5.192 25 C -0.081 4.081 26 H 0.060 0.940 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.035 0.965 32 H 0.030 0.970 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.247 0.753 36 H 0.189 0.811 37 H 0.209 0.791 38 H 0.190 0.810 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.382 -7.919 -4.600 13.844 hybrid contribution 1.384 0.886 0.318 1.674 sum -8.998 -7.033 -4.282 12.197 Atomic orbital electron populations 1.22040 0.93169 1.03212 1.02187 1.21858 0.94319 0.96777 0.85554 0.93750 1.21411 0.83069 0.99681 0.94417 1.44148 1.00922 1.20417 1.67931 1.20733 0.94612 0.86161 0.96232 1.19445 0.93076 1.09525 1.16462 0.91536 1.25476 1.00035 1.01211 0.97615 1.70176 1.15277 1.48636 1.23079 0.85488 0.79447 0.78736 0.78195 1.21390 1.23284 1.19833 1.45619 1.63957 1.14254 1.08080 1.18024 0.78240 0.86240 0.83840 1.90698 1.52452 1.16534 1.84975 1.20272 1.01214 0.94124 0.85790 1.21391 1.02442 0.92070 1.02332 1.21866 0.89466 1.01480 0.89564 1.22549 1.07761 0.92873 1.01982 1.17986 0.80255 0.89471 0.82453 1.90877 1.60716 1.69160 1.27957 1.45428 1.50889 1.15856 1.06999 1.22408 1.01781 0.79523 1.04403 0.93990 0.90216 0.90271 0.91527 0.89922 0.96509 0.97024 0.93820 0.94810 0.75264 0.81094 0.79076 0.80961 0.92000 0.89603 0.87141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.48 71.98 0.68 -2.74 16 2 C 0.12 3.82 2.88 44.99 0.13 3.95 16 3 H 0.04 1.82 7.58 -2.39 -0.02 1.80 16 4 C 0.14 4.45 5.33 86.38 0.46 4.91 16 5 N -0.61 -25.89 2.78 -726.91 -2.02 -27.92 16 6 C 0.17 6.66 7.62 127.77 0.97 7.64 16 7 C -0.25 -12.87 9.68 84.03 0.81 -12.06 16 8 H 0.07 3.34 7.86 -2.91 -0.02 3.32 16 9 C -0.05 -2.54 5.04 84.86 0.43 -2.11 16 10 N -0.92 -51.22 10.69 21.65 0.23 -50.99 16 11 Si 0.95 44.29 29.58 68.60 2.03 46.32 16 12 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 13 H -0.31 -14.77 7.11 99.48 0.71 -14.06 16 14 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 15 N -0.67 -20.18 4.35 -445.36 -1.94 -22.12 16 16 C 0.55 18.90 7.60 86.80 0.66 19.56 16 17 O -0.57 -22.70 12.87 -3.85 -0.05 -22.75 16 18 C 0.10 2.92 6.63 40.45 0.27 3.18 16 19 C -0.16 -3.60 9.48 22.34 0.21 -3.39 16 20 C 0.00 -0.05 10.08 22.30 0.22 0.18 16 21 C -0.23 -5.50 10.00 22.51 0.23 -5.27 16 22 C 0.49 16.45 7.43 84.99 0.63 17.08 16 23 O -0.60 -23.94 16.56 -5.20 -0.09 -24.03 16 24 N -0.48 -15.87 3.02 -660.61 -1.99 -17.86 16 25 C 0.06 1.97 9.13 127.77 1.17 3.13 16 26 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 28 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.07 2.07 8.03 -2.39 -0.02 2.06 16 30 H 0.08 2.02 7.86 -2.39 -0.02 2.01 16 31 H 0.02 0.71 6.98 -2.39 -0.02 0.69 16 32 H 0.01 0.52 7.15 -2.39 -0.02 0.50 16 33 H 0.04 1.31 7.84 -2.38 -0.02 1.29 16 34 H 0.24 13.46 8.31 -92.71 -0.77 12.69 16 35 H 0.41 10.33 5.19 -92.71 -0.48 9.85 16 36 H 0.17 3.12 6.36 -2.91 -0.02 3.10 16 37 H 0.19 1.70 8.06 -2.91 -0.02 1.67 16 38 H 0.17 3.30 8.06 -2.91 -0.02 3.27 16 39 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.09 2.69 7.24 -2.39 -0.02 2.67 16 41 H 0.11 3.62 5.61 -2.38 -0.01 3.60 16 Total: -1.00 -72.23 336.28 3.61 -68.62 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.56 Total: 16.67 kcal Atomic # 6 Polarization: 27.18 SS G_CDS: 6.88 Total: 34.06 kcal Atomic # 7 Polarization: -113.17 SS G_CDS: -5.72 Total: -118.89 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -0.14 Total: -46.77 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -72.23 3.61 -68.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754325613.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.640 kcal (2) G-P(sol) polarization free energy of solvation -72.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds