Wall clock time and date at job start Tue Mar 31 2020 04:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47328 * 2 1 4 4 C 1.53003 * 109.46834 * 240.00255 * 2 1 3 5 5 N 1.46503 * 109.46991 * 185.00192 * 4 2 1 6 6 C 1.46499 * 119.99610 * 270.00040 * 5 4 2 7 7 C 1.36932 * 119.99873 * 89.99931 * 5 4 2 8 8 H 1.07999 * 120.00752 * 22.33481 * 7 5 4 9 9 C 1.38822 * 119.99767 * 202.33301 * 7 5 4 10 10 N 1.31618 * 119.99495 * 11.37126 * 9 7 5 11 11 Si 1.86796 * 119.99801 * 191.37515 * 9 7 5 12 12 H 1.48492 * 109.47363 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47139 * 120.00219 * 11 9 7 14 14 H 1.48504 * 109.46629 * 239.99581 * 11 9 7 15 15 N 1.46498 * 109.47184 * 120.00479 * 2 1 3 16 16 C 1.34781 * 119.99587 * 274.99660 * 15 2 1 17 17 O 1.21537 * 120.00164 * 0.02562 * 16 15 2 18 18 C 1.47887 * 119.99848 * 179.97438 * 16 15 2 19 19 C 1.36303 * 119.75576 * 359.97438 * 18 16 15 20 20 C 1.40398 * 119.90456 * 179.97438 * 19 18 16 21 21 C 1.36110 * 119.41707 * 359.69749 * 20 19 18 22 22 C 1.41240 * 119.50883 * 0.59048 * 21 20 19 23 23 O 1.21965 * 119.95617 * 179.69681 * 22 21 20 24 24 N 1.34667 * 120.08505 * 359.42509 * 22 21 20 25 25 C 1.46500 * 119.70483 * 180.27169 * 24 22 21 26 26 H 1.09000 * 109.47552 * 59.99613 * 1 2 3 27 27 H 1.09006 * 109.47476 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47176 * 299.99605 * 1 2 3 29 29 H 1.09009 * 109.46963 * 304.99864 * 4 2 1 30 30 H 1.08993 * 109.47219 * 64.99795 * 4 2 1 31 31 H 1.08997 * 109.47070 * 94.22500 * 6 5 4 32 32 H 1.09002 * 109.46951 * 214.22374 * 6 5 4 33 33 H 1.08997 * 109.47261 * 334.22220 * 6 5 4 34 34 H 0.97006 * 119.99373 * 180.02562 * 10 9 7 35 35 H 0.97004 * 120.00405 * 94.99537 * 15 2 1 36 36 H 1.08003 * 120.04783 * 359.97438 * 19 18 16 37 37 H 1.08004 * 120.29228 * 180.02562 * 20 19 18 38 38 H 1.08004 * 120.24814 * 180.29562 * 21 20 19 39 39 H 1.09002 * 109.46791 * 0.02562 * 25 24 22 40 40 H 1.09005 * 109.47189 * 120.00230 * 25 24 22 41 41 H 1.09001 * 109.47401 * 240.00544 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.3342 0.2341 -1.7613 7 6 4.0848 -1.9159 -0.6024 8 1 3.5337 -2.8400 -0.5087 9 6 5.3863 -1.8327 -0.1266 10 7 5.9794 -0.6614 -0.0339 11 14 6.2956 -3.3831 0.3821 12 1 5.4143 -4.5616 0.1835 13 1 7.5189 -3.5338 -0.4462 14 1 6.6765 -3.2861 1.8142 15 7 2.0183 -0.6907 1.1961 16 6 2.1471 -0.0183 2.3571 17 8 1.8577 1.1608 2.4118 18 6 2.6395 -0.7156 3.5647 19 6 2.9612 -2.0385 3.4981 20 6 3.4295 -2.7035 4.6425 21 6 3.5630 -2.0142 5.8085 22 6 3.2167 -0.6456 5.8512 23 8 3.3279 -0.0214 6.8932 24 7 2.7691 -0.0276 4.7416 25 6 2.4179 1.3938 4.7938 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6053 -1.7198 -1.2952 30 1 1.7515 -0.1583 -2.1370 31 1 4.6022 0.9455 -0.9802 32 1 5.2403 -0.2028 -2.1812 33 1 3.7810 0.7484 -2.5471 34 1 6.8889 -0.6033 0.2983 35 1 2.2490 -1.6319 1.1525 36 1 2.8560 -2.5744 2.5663 37 1 3.6866 -3.7515 4.5967 38 1 3.9266 -2.5112 6.6958 39 1 2.5839 1.7722 5.8025 40 1 3.0402 1.9479 4.0911 41 1 1.3685 1.5188 4.5267 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754325614.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:51 Heat of formation + Delta-G solvation = -4.771375 kcal Electronic energy + Delta-G solvation = -24786.880333 eV Core-core repulsion = 21282.665649 eV Total energy + Delta-G solvation = -3504.214685 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.31425 -39.22548 -36.79694 -36.31701 -34.64549 -33.88575 -31.87554 -30.66891 -29.18030 -27.40341 -26.28979 -25.72661 -24.72637 -22.53265 -22.02278 -20.89246 -19.97279 -17.84284 -17.18326 -16.89913 -16.63899 -16.03621 -15.60977 -15.30478 -14.98042 -14.46891 -14.40788 -13.82290 -13.74628 -13.27268 -13.01060 -12.84970 -12.53132 -12.35875 -12.27015 -12.13263 -11.88676 -11.55576 -11.48353 -11.39454 -10.95579 -10.79929 -10.53783 -10.37131 -10.12867 -10.00638 -9.97209 -9.94956 -9.41652 -8.69351 -8.57019 -7.86264 -6.90799 -5.85945 -3.33111 0.61307 1.81867 2.65691 3.16236 3.25237 3.32247 3.36437 3.53210 3.86614 4.35153 4.72506 4.73547 4.97150 5.21087 5.28240 5.35493 5.38473 5.52184 5.65861 5.67815 5.73149 5.84534 5.95996 6.00972 6.03888 6.10315 6.11977 6.29569 6.32347 6.36475 6.50793 6.64213 6.74237 6.95016 7.16603 7.29140 7.59158 7.69709 7.91822 8.12303 8.24171 8.51247 9.08112 9.72193 10.22167 11.17754 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013087 B = 0.007114 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.960018 B = 3934.709739 C = 5265.403610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.118 3.882 3 H 0.081 0.919 4 C 0.141 3.859 5 N -0.599 5.599 6 C 0.163 3.837 7 C -0.264 4.264 8 H 0.067 0.933 9 C 0.011 3.989 10 N -0.895 5.895 11 Si 0.892 3.108 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.287 1.287 15 N -0.665 5.665 16 C 0.555 3.445 17 O -0.543 6.543 18 C 0.131 3.869 19 C -0.180 4.180 20 C -0.020 4.020 21 C -0.230 4.230 22 C 0.513 3.487 23 O -0.560 6.560 24 N -0.475 5.475 25 C 0.067 3.933 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.028 0.972 32 H 0.045 0.955 33 H -0.004 1.004 34 H 0.253 0.747 35 H 0.407 0.593 36 H 0.153 0.847 37 H 0.141 0.859 38 H 0.150 0.850 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.931 -2.948 2.796 9.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.010 3.990 3 H 0.099 0.901 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.019 3.981 7 C -0.393 4.393 8 H 0.085 0.915 9 C -0.189 4.189 10 N -0.539 5.539 11 Si 0.722 3.278 12 H -0.201 1.201 13 H -0.216 1.216 14 H -0.214 1.214 15 N -0.315 5.315 16 C 0.340 3.660 17 O -0.423 6.423 18 C 0.019 3.981 19 C -0.205 4.205 20 C -0.042 4.042 21 C -0.252 4.252 22 C 0.315 3.685 23 O -0.444 6.444 24 N -0.186 5.186 25 C -0.073 4.073 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.015 0.985 34 H 0.063 0.937 35 H 0.245 0.755 36 H 0.170 0.830 37 H 0.158 0.842 38 H 0.167 0.833 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.882 -1.609 3.479 9.674 hybrid contribution 0.986 -1.290 0.228 1.640 sum -7.896 -2.899 3.707 9.192 Atomic orbital electron populations 1.22162 0.96400 1.01542 1.01831 1.22001 0.92063 0.98581 0.86337 0.90098 1.21214 0.86039 0.98032 0.93443 1.43900 0.98835 1.22676 1.66662 1.20806 0.93028 0.90438 0.93871 1.19103 0.97316 0.89464 1.33420 0.91478 1.25007 0.98579 0.96150 0.99197 1.70072 1.13364 1.21613 1.48840 0.86384 0.80305 0.82904 0.78224 1.20098 1.21582 1.21420 1.45620 1.63376 1.14571 1.07917 1.17698 0.78839 0.86398 0.83101 1.90752 1.51495 1.15075 1.84981 1.20294 0.98167 0.92423 0.87171 1.20981 1.06026 0.92728 1.00728 1.21424 0.90858 1.00482 0.91449 1.22290 1.08924 0.93491 1.00545 1.17286 0.79626 0.88928 0.82682 1.90894 1.57238 1.67560 1.28709 1.45355 1.52370 1.12605 1.08278 1.22270 1.03007 0.78006 1.04064 0.91899 0.92780 0.92867 0.93127 0.92624 0.95388 0.93653 0.98500 0.93669 0.75451 0.82974 0.84150 0.83253 0.89351 0.89445 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.48 37.16 0.35 -1.75 16 2 C 0.12 1.94 2.88 -67.93 -0.20 1.74 16 3 H 0.08 1.56 7.58 -51.93 -0.39 1.16 16 4 C 0.14 2.43 5.36 -4.04 -0.02 2.40 16 5 N -0.60 -13.09 2.82 -181.12 -0.51 -13.60 16 6 C 0.16 3.74 9.01 59.85 0.54 4.28 16 7 C -0.26 -6.15 8.02 -15.06 -0.12 -6.27 16 8 H 0.07 1.49 7.84 -52.49 -0.41 1.08 16 9 C 0.01 0.26 5.13 -17.43 -0.09 0.17 16 10 N -0.90 -24.15 10.59 55.49 0.59 -23.56 16 11 Si 0.89 19.69 29.57 -169.99 -5.03 14.66 16 12 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 15 N -0.67 -11.33 4.43 -54.74 -0.24 -11.57 16 16 C 0.56 10.06 7.69 -12.31 -0.09 9.96 16 17 O -0.54 -10.73 12.83 5.33 0.07 -10.66 16 18 C 0.13 2.21 6.63 -82.33 -0.55 1.67 16 19 C -0.18 -2.66 9.51 -39.47 -0.38 -3.04 16 20 C -0.02 -0.27 10.08 -39.53 -0.40 -0.67 16 21 C -0.23 -3.36 10.00 -39.21 -0.39 -3.76 16 22 C 0.51 9.13 7.43 -15.17 -0.11 9.01 16 23 O -0.56 -11.37 16.39 4.95 0.08 -11.29 16 24 N -0.47 -8.24 3.02 -122.80 -0.37 -8.61 16 25 C 0.07 1.09 8.93 59.85 0.53 1.63 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.81 8.03 -51.92 -0.42 0.39 16 30 H 0.06 0.87 7.86 -51.93 -0.41 0.47 16 31 H 0.03 0.71 7.42 -51.93 -0.39 0.33 16 32 H 0.04 1.13 7.19 -51.93 -0.37 0.75 16 33 H 0.00 -0.07 7.84 -51.93 -0.41 -0.48 16 34 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.41 6.68 5.37 -40.82 -0.22 6.46 16 36 H 0.15 2.05 6.29 -52.48 -0.33 1.72 16 37 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 38 H 0.15 1.85 8.06 -52.48 -0.42 1.43 16 39 H 0.09 1.38 6.86 -51.93 -0.36 1.03 16 40 H 0.09 1.50 7.22 -51.93 -0.37 1.12 16 41 H 0.08 1.30 7.22 -51.93 -0.37 0.93 16 LS Contribution 336.70 15.07 5.07 5.07 Total: -1.00 -30.28 336.70 -6.96 -37.24 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.70 Total: 6.93 kcal Atomic # 6 Polarization: 16.31 SS G_CDS: -0.92 Total: 15.39 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.54 Total: -57.34 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: 0.15 Total: -21.95 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.28 -6.96 -37.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754325614.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.465 kcal (2) G-P(sol) polarization free energy of solvation -30.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds