Wall clock time and date at job start Tue Mar 31 2020 04:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47328 * 2 1 4 4 C 1.53003 * 109.46834 * 240.00255 * 2 1 3 5 5 N 1.46503 * 109.46991 * 185.00192 * 4 2 1 6 6 C 1.46499 * 119.99610 * 270.00040 * 5 4 2 7 7 C 1.36932 * 119.99873 * 89.99931 * 5 4 2 8 8 H 1.07999 * 120.00752 * 22.33481 * 7 5 4 9 9 C 1.38822 * 119.99767 * 202.33301 * 7 5 4 10 10 N 1.31618 * 119.99495 * 11.37126 * 9 7 5 11 11 Si 1.86796 * 119.99801 * 191.37515 * 9 7 5 12 12 H 1.48492 * 109.47363 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47139 * 120.00219 * 11 9 7 14 14 H 1.48504 * 109.46629 * 239.99581 * 11 9 7 15 15 N 1.46498 * 109.47184 * 120.00479 * 2 1 3 16 16 C 1.34781 * 119.99587 * 274.99660 * 15 2 1 17 17 O 1.21537 * 120.00164 * 0.02562 * 16 15 2 18 18 C 1.47887 * 119.99848 * 179.97438 * 16 15 2 19 19 C 1.36303 * 119.75576 * 359.97438 * 18 16 15 20 20 C 1.40398 * 119.90456 * 179.97438 * 19 18 16 21 21 C 1.36110 * 119.41707 * 359.69749 * 20 19 18 22 22 C 1.41240 * 119.50883 * 0.59048 * 21 20 19 23 23 O 1.21965 * 119.95617 * 179.69681 * 22 21 20 24 24 N 1.34667 * 120.08505 * 359.42509 * 22 21 20 25 25 C 1.46500 * 119.70483 * 180.27169 * 24 22 21 26 26 H 1.09000 * 109.47552 * 59.99613 * 1 2 3 27 27 H 1.09006 * 109.47476 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47176 * 299.99605 * 1 2 3 29 29 H 1.09009 * 109.46963 * 304.99864 * 4 2 1 30 30 H 1.08993 * 109.47219 * 64.99795 * 4 2 1 31 31 H 1.08997 * 109.47070 * 94.22500 * 6 5 4 32 32 H 1.09002 * 109.46951 * 214.22374 * 6 5 4 33 33 H 1.08997 * 109.47261 * 334.22220 * 6 5 4 34 34 H 0.97006 * 119.99373 * 180.02562 * 10 9 7 35 35 H 0.97004 * 120.00405 * 94.99537 * 15 2 1 36 36 H 1.08003 * 120.04783 * 359.97438 * 19 18 16 37 37 H 1.08004 * 120.29228 * 180.02562 * 20 19 18 38 38 H 1.08004 * 120.24814 * 180.29562 * 21 20 19 39 39 H 1.09002 * 109.46791 * 0.02562 * 25 24 22 40 40 H 1.09005 * 109.47189 * 120.00230 * 25 24 22 41 41 H 1.09001 * 109.47401 * 240.00544 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.3342 0.2341 -1.7613 7 6 4.0848 -1.9159 -0.6024 8 1 3.5337 -2.8400 -0.5087 9 6 5.3863 -1.8327 -0.1266 10 7 5.9794 -0.6614 -0.0339 11 14 6.2956 -3.3831 0.3821 12 1 5.4143 -4.5616 0.1835 13 1 7.5189 -3.5338 -0.4462 14 1 6.6765 -3.2861 1.8142 15 7 2.0183 -0.6907 1.1961 16 6 2.1471 -0.0183 2.3571 17 8 1.8577 1.1608 2.4118 18 6 2.6395 -0.7156 3.5647 19 6 2.9612 -2.0385 3.4981 20 6 3.4295 -2.7035 4.6425 21 6 3.5630 -2.0142 5.8085 22 6 3.2167 -0.6456 5.8512 23 8 3.3279 -0.0214 6.8932 24 7 2.7691 -0.0276 4.7416 25 6 2.4179 1.3938 4.7938 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6053 -1.7198 -1.2952 30 1 1.7515 -0.1583 -2.1370 31 1 4.6022 0.9455 -0.9802 32 1 5.2403 -0.2028 -2.1812 33 1 3.7810 0.7484 -2.5471 34 1 6.8889 -0.6033 0.2983 35 1 2.2490 -1.6319 1.1525 36 1 2.8560 -2.5744 2.5663 37 1 3.6866 -3.7515 4.5967 38 1 3.9266 -2.5112 6.6958 39 1 2.5839 1.7722 5.8025 40 1 3.0402 1.9479 4.0911 41 1 1.3685 1.5188 4.5267 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754325614.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:50 Heat of formation + Delta-G solvation = -24.060156 kcal Electronic energy + Delta-G solvation = -24787.716758 eV Core-core repulsion = 21282.665649 eV Total energy + Delta-G solvation = -3505.051109 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.61263 -40.61747 -38.25740 -37.74107 -36.09553 -35.27217 -33.39834 -32.23630 -30.46014 -28.69277 -28.00146 -27.32211 -26.00070 -23.85001 -23.50462 -22.37476 -21.37587 -19.22638 -18.55413 -18.45672 -17.99420 -17.38095 -16.97671 -16.81671 -16.54754 -15.84222 -15.59996 -15.46345 -15.17196 -14.89101 -14.48308 -14.23829 -13.89704 -13.74563 -13.47429 -13.40373 -13.16017 -13.03986 -12.81329 -12.79928 -12.67199 -12.46947 -12.11344 -11.91443 -11.85919 -11.62738 -11.39936 -11.15987 -10.80391 -10.56489 -9.95871 -9.15287 -8.72866 -7.72883 -5.20517 -0.61037 0.58404 1.37570 1.51083 1.57024 1.64525 1.80232 2.21453 2.58009 2.60133 3.41204 3.47338 3.54236 3.77176 3.86159 4.11168 4.17981 4.23472 4.34270 4.40620 4.46596 4.55974 4.68290 4.81596 4.83869 4.88540 4.94938 4.96004 5.05040 5.14920 5.20923 5.35053 5.38222 5.43985 5.61826 5.72330 5.78837 5.88264 6.38788 6.55369 6.79800 7.15004 7.21889 7.94662 8.41406 9.30533 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013087 B = 0.007114 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.960018 B = 3934.709739 C = 5265.403610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.121 3.879 3 H 0.046 0.954 4 C 0.140 3.860 5 N -0.612 5.612 6 C 0.178 3.822 7 C -0.245 4.245 8 H 0.089 0.911 9 C -0.045 4.045 10 N -0.936 5.936 11 Si 0.945 3.055 12 H -0.248 1.248 13 H -0.311 1.311 14 H -0.294 1.294 15 N -0.662 5.662 16 C 0.550 3.450 17 O -0.570 6.570 18 C 0.100 3.900 19 C -0.163 4.163 20 C -0.008 4.008 21 C -0.231 4.231 22 C 0.496 3.504 23 O -0.599 6.599 24 N -0.481 5.481 25 C 0.075 3.925 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.075 0.925 31 H -0.009 1.009 32 H 0.017 0.983 33 H 0.026 0.974 34 H 0.239 0.761 35 H 0.412 0.588 36 H 0.170 0.830 37 H 0.187 0.813 38 H 0.173 0.827 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.542 -5.936 2.162 12.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.014 3.986 3 H 0.064 0.936 4 C 0.014 3.986 5 N -0.334 5.334 6 C 0.033 3.967 7 C -0.375 4.375 8 H 0.106 0.894 9 C -0.241 4.241 10 N -0.583 5.583 11 Si 0.775 3.225 12 H -0.171 1.171 13 H -0.239 1.239 14 H -0.221 1.221 15 N -0.312 5.312 16 C 0.335 3.665 17 O -0.452 6.452 18 C -0.010 4.010 19 C -0.188 4.188 20 C -0.029 4.029 21 C -0.253 4.253 22 C 0.300 3.700 23 O -0.486 6.486 24 N -0.192 5.192 25 C -0.066 4.066 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.009 0.991 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.048 0.952 35 H 0.250 0.750 36 H 0.187 0.813 37 H 0.204 0.796 38 H 0.191 0.809 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.557 -4.646 2.803 11.870 hybrid contribution 1.420 -0.375 0.326 1.504 sum -9.137 -5.021 3.129 10.885 Atomic orbital electron populations 1.22043 0.93259 1.03058 1.02274 1.21887 0.94371 0.96472 0.85838 0.93567 1.21431 0.83118 0.99783 0.94301 1.44139 1.00870 1.22012 1.66403 1.20486 0.92788 0.90076 0.93374 1.19534 0.96943 0.90403 1.30651 0.89373 1.25650 0.99847 0.97974 1.00582 1.70277 1.12871 1.23687 1.51434 0.85520 0.78796 0.81321 0.76879 1.17097 1.23924 1.22124 1.45623 1.63137 1.14646 1.07766 1.17951 0.78548 0.86227 0.83778 1.90733 1.52732 1.16210 1.85482 1.20327 1.00630 0.93411 0.86646 1.21394 1.03513 0.91785 1.02074 1.21861 0.88933 1.02323 0.89772 1.22535 1.08589 0.91883 1.02272 1.17898 0.79626 0.90206 0.82226 1.90865 1.59232 1.68580 1.29903 1.45402 1.52485 1.12760 1.08595 1.22142 1.02900 0.78071 1.03509 0.89885 0.90637 0.94054 0.90693 0.90650 0.99055 0.96442 0.95515 0.95153 0.74967 0.81259 0.79569 0.80931 0.89292 0.91058 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.48 71.98 0.68 -2.76 16 2 C 0.12 3.79 2.88 44.99 0.13 3.92 16 3 H 0.05 1.78 7.58 -2.39 -0.02 1.76 16 4 C 0.14 4.38 5.36 86.38 0.46 4.84 16 5 N -0.61 -25.72 2.82 -726.92 -2.05 -27.77 16 6 C 0.18 8.18 9.01 127.77 1.15 9.33 16 7 C -0.25 -10.88 8.02 84.04 0.67 -10.21 16 8 H 0.09 3.52 7.84 -2.91 -0.02 3.50 16 9 C -0.05 -2.21 5.13 84.86 0.44 -1.78 16 10 N -0.94 -51.63 10.59 21.65 0.23 -51.40 16 11 Si 0.95 39.37 29.57 68.60 2.03 41.40 16 12 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 13 H -0.31 -13.98 7.11 99.48 0.71 -13.28 16 14 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 15 N -0.66 -21.55 4.43 -445.38 -1.97 -23.52 16 16 C 0.55 19.84 7.69 86.80 0.67 20.51 16 17 O -0.57 -23.12 12.83 -3.83 -0.05 -23.17 16 18 C 0.10 3.31 6.63 40.45 0.27 3.58 16 19 C -0.16 -4.37 9.51 22.34 0.21 -4.16 16 20 C -0.01 -0.17 10.08 22.30 0.22 0.05 16 21 C -0.23 -6.20 10.00 22.51 0.23 -5.97 16 22 C 0.50 17.54 7.43 85.00 0.63 18.17 16 23 O -0.60 -24.68 16.39 -5.20 -0.09 -24.77 16 24 N -0.48 -16.86 3.02 -660.59 -1.99 -18.85 16 25 C 0.07 2.54 8.93 127.77 1.14 3.68 16 26 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 2.03 8.03 -2.38 -0.02 2.01 16 30 H 0.08 2.09 7.86 -2.39 -0.02 2.07 16 31 H -0.01 -0.47 7.42 -2.39 -0.02 -0.49 16 32 H 0.02 0.86 7.19 -2.39 -0.02 0.85 16 33 H 0.03 1.03 7.84 -2.39 -0.02 1.02 16 34 H 0.24 13.33 8.31 -92.70 -0.77 12.56 16 35 H 0.41 12.35 5.37 -92.71 -0.50 11.86 16 36 H 0.17 3.90 6.29 -2.91 -0.02 3.88 16 37 H 0.19 2.50 8.06 -2.91 -0.02 2.47 16 38 H 0.17 3.76 8.06 -2.91 -0.02 3.73 16 39 H 0.09 2.94 6.86 -2.39 -0.02 2.93 16 40 H 0.07 2.61 7.22 -2.38 -0.02 2.60 16 41 H 0.09 2.88 7.22 -2.39 -0.02 2.87 16 Total: -1.00 -68.08 336.70 3.56 -64.52 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.55 Total: 24.34 kcal Atomic # 6 Polarization: 32.30 SS G_CDS: 6.91 Total: 39.21 kcal Atomic # 7 Polarization: -115.75 SS G_CDS: -5.79 Total: -121.54 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -0.13 Total: -47.94 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -68.08 3.56 -64.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754325614.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.463 kcal (2) G-P(sol) polarization free energy of solvation -68.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds