Wall clock time and date at job start Tue Mar 31 2020 03:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41258 * 126.70560 * 2 1 4 4 C 1.36818 * 103.84867 * 179.89354 * 3 2 1 5 5 C 1.47509 * 126.94670 * 180.11413 * 4 3 2 6 6 O 1.21580 * 120.00104 * 0.32597 * 5 4 3 7 7 N 1.34777 * 120.00002 * 180.32793 * 5 4 3 8 8 C 1.47023 * 125.65169 * 359.69160 * 7 5 4 9 9 C 1.54332 * 107.26850 * 178.85027 * 8 7 5 10 10 C 1.55160 * 103.02162 * 338.14189 * 9 8 7 11 11 H 1.08995 * 111.03415 * 277.21721 * 10 9 8 12 12 C 1.52999 * 111.00510 * 153.38095 * 10 9 8 13 13 H 1.09007 * 109.46959 * 306.35177 * 12 10 9 14 14 C 1.52997 * 109.47320 * 66.35065 * 12 10 9 15 15 N 1.46500 * 109.47294 * 186.35345 * 12 10 9 16 16 C 1.36927 * 120.00293 * 154.99954 * 15 12 10 17 17 H 1.08003 * 120.00383 * 359.97438 * 16 15 12 18 18 C 1.38819 * 119.99938 * 179.97438 * 16 15 12 19 19 N 1.31615 * 120.00028 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99950 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47280 * 89.99816 * 20 18 16 22 22 H 1.48501 * 109.47077 * 210.00413 * 20 18 16 23 23 H 1.48509 * 109.47009 * 329.99911 * 20 18 16 24 24 C 1.47431 * 125.64690 * 180.02562 * 7 5 4 25 25 O 1.34642 * 106.11219 * 0.36680 * 4 3 2 26 26 N 1.20888 * 111.46923 * 359.75431 * 25 4 3 27 27 H 1.09001 * 109.46953 * 269.70598 * 1 2 3 28 28 H 1.09000 * 109.47318 * 29.70196 * 1 2 3 29 29 H 1.09000 * 109.47161 * 149.70826 * 1 2 3 30 30 H 1.08006 * 128.07689 * 0.02562 * 3 2 1 31 31 H 1.09005 * 109.88174 * 298.39712 * 8 7 5 32 32 H 1.08999 * 109.87868 * 59.55956 * 8 7 5 33 33 H 1.09002 * 110.84938 * 219.67258 * 9 8 7 34 34 H 1.09004 * 110.66445 * 96.52148 * 9 8 7 35 35 H 1.08997 * 109.47069 * 59.99365 * 14 12 10 36 36 H 1.09001 * 109.47119 * 180.02562 * 14 12 10 37 37 H 1.09008 * 109.46856 * 300.00301 * 14 12 10 38 38 H 0.97001 * 119.99202 * 334.99739 * 15 12 10 39 39 H 0.97001 * 120.00066 * 179.97438 * 19 18 16 40 40 H 1.08997 * 110.36515 * 322.92401 * 24 7 5 41 41 H 1.08992 * 110.36809 * 85.14290 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3514 1.1325 0.0000 4 6 3.6121 0.6010 0.0025 5 6 4.8870 1.3430 0.0059 6 8 4.8829 2.5587 0.0128 7 7 6.0565 0.6731 0.0014 8 6 6.2064 -0.7895 -0.0006 9 6 7.7187 -1.0950 -0.0354 10 6 8.3259 0.2104 -0.6139 11 1 8.2659 0.2211 -1.7021 12 6 9.7703 0.3981 -0.1454 13 1 9.8098 0.3406 0.9424 14 6 10.6483 -0.7014 -0.7464 15 7 10.2595 1.7077 -0.5833 16 6 11.2723 2.3242 0.1015 17 1 11.7104 1.8453 0.9648 18 6 11.7362 3.5650 -0.3138 19 7 11.2028 4.1485 -1.3660 20 14 13.1185 4.4057 0.6200 21 1 14.4247 4.0006 0.0415 22 1 12.9646 5.8788 0.5118 23 1 13.0649 4.0062 2.0494 24 6 7.3976 1.2857 0.0046 25 8 3.4540 -0.7360 -0.0046 26 7 2.2848 -1.0433 -0.0059 27 1 -0.3633 -0.0053 1.0277 28 1 -0.3634 0.8926 -0.5092 29 1 -0.3633 -0.8874 -0.5184 30 1 2.0679 2.1747 0.0004 31 1 5.7621 -1.2088 0.9022 32 1 5.7246 -1.2102 -0.8832 33 1 7.9286 -1.9410 -0.6899 34 1 8.0963 -1.2837 0.9696 35 1 10.6087 -0.6440 -1.8341 36 1 11.6772 -0.5679 -0.4122 37 1 10.2843 -1.6758 -0.4205 38 1 9.8658 2.1380 -1.3584 39 1 11.5267 5.0156 -1.6560 40 1 7.4036 2.1885 -0.6060 41 1 7.7071 1.5158 1.0240 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754787579.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:57 Heat of formation + Delta-G solvation = 37.885272 kcal Electronic energy + Delta-G solvation = -23428.951103 eV Core-core repulsion = 19926.586149 eV Total energy + Delta-G solvation = -3502.364954 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 3.90 seconds Orbital eigenvalues (eV) -45.21507 -40.02283 -37.90666 -35.40563 -35.00589 -32.71720 -32.09036 -30.54710 -29.06859 -28.65544 -28.20358 -24.92321 -23.88615 -23.24371 -22.06859 -21.53956 -19.68511 -19.60163 -18.02721 -17.91134 -17.03338 -16.39780 -16.18412 -15.59624 -14.84936 -14.43160 -14.07323 -13.79382 -13.73072 -13.68300 -13.47825 -13.30471 -13.03290 -12.74894 -12.71393 -12.20900 -12.07538 -11.66414 -11.64493 -11.35317 -10.89825 -10.77523 -10.62432 -10.57876 -10.37048 -10.31393 -10.22428 -9.92745 -9.88585 -9.62456 -8.91249 -8.66539 -6.96465 -5.75364 -3.04564 0.63250 1.78597 2.41337 2.91726 3.01732 3.44583 3.49812 3.51654 3.78996 4.11556 4.52327 4.61005 4.66406 4.78673 4.89407 4.98455 5.05720 5.10434 5.28425 5.33215 5.40641 5.52536 5.55346 5.65183 5.73387 5.86753 5.88094 5.91203 6.04401 6.14437 6.19784 6.29478 6.37006 6.52797 6.61502 6.83870 7.06272 7.34439 7.70913 7.74304 7.96448 8.42554 9.54083 10.10424 10.44857 11.47095 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026934 B = 0.003284 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.346443 B = 8523.312481 C = 9326.387755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.009 3.991 3 C -0.157 4.157 4 C -0.069 4.069 5 C 0.611 3.389 6 O -0.509 6.509 7 N -0.603 5.603 8 C 0.096 3.904 9 C -0.123 4.123 10 C -0.102 4.102 11 H 0.083 0.917 12 C 0.185 3.815 13 H 0.050 0.950 14 C -0.164 4.164 15 N -0.725 5.725 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.905 3.095 21 H -0.291 1.291 22 H -0.292 1.292 23 H -0.282 1.282 24 C 0.120 3.880 25 O 0.117 5.883 26 N -0.351 5.351 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.183 0.817 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.046 0.954 36 H 0.054 0.946 37 H 0.038 0.962 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.089 0.911 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.186 -12.284 2.400 22.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.148 4.148 3 C -0.180 4.180 4 C -0.135 4.135 5 C 0.396 3.604 6 O -0.385 6.385 7 N -0.336 5.336 8 C -0.027 4.027 9 C -0.161 4.161 10 C -0.122 4.122 11 H 0.101 0.899 12 C 0.074 3.926 13 H 0.068 0.932 14 C -0.224 4.224 15 N -0.366 5.366 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.736 3.264 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.001 4.001 25 O 0.045 5.955 26 N -0.053 5.053 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.201 0.799 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.218 0.782 39 H 0.065 0.935 40 H 0.107 0.893 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.353 -12.816 2.523 22.526 hybrid contribution 0.608 1.412 0.163 1.546 sum -17.745 -11.404 2.686 21.263 Atomic orbital electron populations 1.20201 0.85298 1.04099 1.03662 1.23647 0.99355 0.88365 1.03462 1.22863 0.89926 1.01780 1.03402 1.24312 0.97359 0.83805 1.08067 1.16117 0.80207 0.85726 0.78365 1.90914 1.85460 1.11511 1.50630 1.48496 1.06136 1.08249 1.70721 1.22218 0.98397 0.79868 1.02169 1.22687 0.92332 0.98535 1.02583 1.22702 0.96035 0.92916 1.00573 0.89876 1.20160 0.88261 0.87200 0.96934 0.93200 1.22439 1.01264 0.97785 1.00930 1.42423 1.42277 1.16784 1.35128 1.19192 1.09936 0.99682 1.08166 0.91214 1.24731 1.00056 0.97758 0.98276 1.69652 1.44537 1.17171 1.26562 0.86228 0.82123 0.78875 0.79174 1.21815 1.21823 1.20792 1.22405 0.77906 0.97289 1.02462 1.85036 1.21211 1.22282 1.66939 1.73724 0.89442 1.24438 1.17733 0.89910 0.89678 0.90308 0.79926 0.90963 0.90946 0.89758 0.90152 0.93482 0.92734 0.94346 0.78247 0.93503 0.89278 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.47 36.01 0.38 -0.09 16 2 C 0.01 0.10 7.31 -82.16 -0.60 -0.51 16 3 C -0.16 -1.74 10.91 -38.95 -0.43 -2.17 16 4 C -0.07 -0.89 7.08 -36.32 -0.26 -1.15 16 5 C 0.61 9.40 7.85 -12.48 -0.10 9.30 16 6 O -0.51 -9.55 17.17 5.30 0.09 -9.46 16 7 N -0.60 -8.66 3.33 -171.73 -0.57 -9.23 16 8 C 0.10 1.07 5.58 -3.06 -0.02 1.05 16 9 C -0.12 -1.36 5.58 -24.89 -0.14 -1.50 16 10 C -0.10 -1.52 2.63 -88.46 -0.23 -1.75 16 11 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 12 C 0.18 3.33 2.41 -67.93 -0.16 3.17 16 13 H 0.05 0.92 8.05 -51.92 -0.42 0.50 16 14 C -0.16 -2.70 9.34 37.16 0.35 -2.36 16 15 N -0.72 -17.18 4.82 -53.42 -0.26 -17.44 16 16 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 17 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 20 Si 0.90 22.25 29.55 -169.99 -5.02 17.23 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.12 1.97 6.08 -2.51 -0.02 1.96 16 25 O 0.12 1.43 9.02 15.55 0.14 1.57 16 26 N -0.35 -4.23 12.04 33.52 0.40 -3.82 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.18 1.70 8.06 -52.48 -0.42 1.28 16 31 H 0.07 0.72 7.85 -51.93 -0.41 0.31 16 32 H 0.07 0.74 7.71 -51.93 -0.40 0.34 16 33 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 34 H 0.08 0.84 8.01 -51.93 -0.42 0.43 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.04 0.51 7.50 -51.92 -0.39 0.12 16 38 H 0.38 9.81 7.80 -40.82 -0.32 9.49 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.09 1.71 8.04 -51.93 -0.42 1.29 16 41 H 0.08 1.36 8.04 -51.93 -0.42 0.95 16 LS Contribution 345.17 15.07 5.20 5.20 Total: -1.00 -31.85 345.17 -6.87 -38.73 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.11 Total: 5.38 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -1.47 Total: -1.02 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: 0.30 Total: -57.63 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.23 Total: -7.89 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.85 -6.87 -38.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754787579.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.612 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.90 seconds