Wall clock time and date at job start Tue Mar 31 2020 03:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41258 * 126.70560 * 2 1 4 4 C 1.36818 * 103.84867 * 179.89354 * 3 2 1 5 5 C 1.47509 * 126.94670 * 180.11413 * 4 3 2 6 6 O 1.21580 * 120.00104 * 0.32597 * 5 4 3 7 7 N 1.34777 * 120.00002 * 180.32793 * 5 4 3 8 8 C 1.47023 * 125.65169 * 359.69160 * 7 5 4 9 9 C 1.54332 * 107.26850 * 178.85027 * 8 7 5 10 10 C 1.55160 * 103.02162 * 338.14189 * 9 8 7 11 11 H 1.08995 * 111.03415 * 277.21721 * 10 9 8 12 12 C 1.52999 * 111.00510 * 153.38095 * 10 9 8 13 13 H 1.09007 * 109.46959 * 306.35177 * 12 10 9 14 14 C 1.52997 * 109.47320 * 66.35065 * 12 10 9 15 15 N 1.46500 * 109.47294 * 186.35345 * 12 10 9 16 16 C 1.36927 * 120.00293 * 154.99954 * 15 12 10 17 17 H 1.08003 * 120.00383 * 359.97438 * 16 15 12 18 18 C 1.38819 * 119.99938 * 179.97438 * 16 15 12 19 19 N 1.31615 * 120.00028 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99950 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47280 * 89.99816 * 20 18 16 22 22 H 1.48501 * 109.47077 * 210.00413 * 20 18 16 23 23 H 1.48509 * 109.47009 * 329.99911 * 20 18 16 24 24 C 1.47431 * 125.64690 * 180.02562 * 7 5 4 25 25 O 1.34642 * 106.11219 * 0.36680 * 4 3 2 26 26 N 1.20888 * 111.46923 * 359.75431 * 25 4 3 27 27 H 1.09001 * 109.46953 * 269.70598 * 1 2 3 28 28 H 1.09000 * 109.47318 * 29.70196 * 1 2 3 29 29 H 1.09000 * 109.47161 * 149.70826 * 1 2 3 30 30 H 1.08006 * 128.07689 * 0.02562 * 3 2 1 31 31 H 1.09005 * 109.88174 * 298.39712 * 8 7 5 32 32 H 1.08999 * 109.87868 * 59.55956 * 8 7 5 33 33 H 1.09002 * 110.84938 * 219.67258 * 9 8 7 34 34 H 1.09004 * 110.66445 * 96.52148 * 9 8 7 35 35 H 1.08997 * 109.47069 * 59.99365 * 14 12 10 36 36 H 1.09001 * 109.47119 * 180.02562 * 14 12 10 37 37 H 1.09008 * 109.46856 * 300.00301 * 14 12 10 38 38 H 0.97001 * 119.99202 * 334.99739 * 15 12 10 39 39 H 0.97001 * 120.00066 * 179.97438 * 19 18 16 40 40 H 1.08997 * 110.36515 * 322.92401 * 24 7 5 41 41 H 1.08992 * 110.36809 * 85.14290 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3514 1.1325 0.0000 4 6 3.6121 0.6010 0.0025 5 6 4.8870 1.3430 0.0059 6 8 4.8829 2.5587 0.0128 7 7 6.0565 0.6731 0.0014 8 6 6.2064 -0.7895 -0.0006 9 6 7.7187 -1.0950 -0.0354 10 6 8.3259 0.2104 -0.6139 11 1 8.2659 0.2211 -1.7021 12 6 9.7703 0.3981 -0.1454 13 1 9.8098 0.3406 0.9424 14 6 10.6483 -0.7014 -0.7464 15 7 10.2595 1.7077 -0.5833 16 6 11.2723 2.3242 0.1015 17 1 11.7104 1.8453 0.9648 18 6 11.7362 3.5650 -0.3138 19 7 11.2028 4.1485 -1.3660 20 14 13.1185 4.4057 0.6200 21 1 14.4247 4.0006 0.0415 22 1 12.9646 5.8788 0.5118 23 1 13.0649 4.0062 2.0494 24 6 7.3976 1.2857 0.0046 25 8 3.4540 -0.7360 -0.0046 26 7 2.2848 -1.0433 -0.0059 27 1 -0.3633 -0.0053 1.0277 28 1 -0.3634 0.8926 -0.5092 29 1 -0.3633 -0.8874 -0.5184 30 1 2.0679 2.1747 0.0004 31 1 5.7621 -1.2088 0.9022 32 1 5.7246 -1.2102 -0.8832 33 1 7.9286 -1.9410 -0.6899 34 1 8.0963 -1.2837 0.9696 35 1 10.6087 -0.6440 -1.8341 36 1 11.6772 -0.5679 -0.4122 37 1 10.2843 -1.6758 -0.4205 38 1 9.8658 2.1380 -1.3584 39 1 11.5267 5.0156 -1.6560 40 1 7.4036 2.1885 -0.6060 41 1 7.7071 1.5158 1.0240 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754787579.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:56 Heat of formation + Delta-G solvation = 16.939847 kcal Electronic energy + Delta-G solvation = -23429.859365 eV Core-core repulsion = 19926.586149 eV Total energy + Delta-G solvation = -3503.273216 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -46.09203 -41.22737 -39.19559 -36.87972 -35.91184 -34.35722 -33.25203 -31.95793 -30.06268 -29.78584 -29.52076 -26.16444 -25.69742 -24.14627 -23.09691 -22.87648 -21.07876 -20.59635 -19.26873 -18.93836 -18.66632 -17.49977 -17.40417 -16.76957 -16.51969 -15.76885 -15.46299 -15.21195 -14.87561 -14.55731 -14.31708 -14.23381 -14.14417 -14.04039 -13.68854 -13.57124 -13.40597 -13.09867 -12.85909 -12.68986 -12.45021 -12.32475 -12.19539 -12.02986 -11.74207 -11.58243 -11.49983 -11.33294 -11.15700 -10.91251 -10.88261 -9.85161 -8.96109 -7.90008 -5.17142 -0.36385 0.96098 1.34151 1.48249 1.49393 1.57359 1.77618 1.97763 2.58703 3.04548 3.20755 3.43853 3.54642 3.63511 3.80232 3.87150 3.92981 4.18754 4.28828 4.32774 4.43005 4.55577 4.65982 4.68801 4.69427 4.71732 4.80450 4.87783 4.89288 4.97828 5.04077 5.13187 5.18603 5.20936 5.32556 5.43538 5.56898 5.68088 6.19955 6.32384 6.64296 6.98143 7.38475 8.16409 8.37225 9.33638 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026934 B = 0.003284 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.346443 B = 8523.312481 C = 9326.387755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.017 3.983 3 C -0.150 4.150 4 C -0.085 4.085 5 C 0.609 3.391 6 O -0.556 6.556 7 N -0.602 5.602 8 C 0.094 3.906 9 C -0.110 4.110 10 C -0.093 4.093 11 H 0.080 0.920 12 C 0.179 3.821 13 H 0.050 0.950 14 C -0.154 4.154 15 N -0.738 5.738 16 C -0.229 4.229 17 H 0.077 0.923 18 C -0.079 4.079 19 N -0.971 5.971 20 Si 0.966 3.034 21 H -0.288 1.288 22 H -0.301 1.301 23 H -0.269 1.269 24 C 0.125 3.875 25 O 0.115 5.885 26 N -0.365 5.365 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.197 0.803 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.041 0.959 36 H 0.033 0.967 37 H 0.081 0.919 38 H 0.370 0.630 39 H 0.248 0.752 40 H 0.049 0.951 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.554 -14.881 3.265 24.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.140 4.140 3 C -0.172 4.172 4 C -0.151 4.151 5 C 0.395 3.605 6 O -0.435 6.435 7 N -0.333 5.333 8 C -0.027 4.027 9 C -0.148 4.148 10 C -0.113 4.113 11 H 0.098 0.902 12 C 0.071 3.929 13 H 0.068 0.932 14 C -0.214 4.214 15 N -0.378 5.378 16 C -0.361 4.361 17 H 0.095 0.905 18 C -0.271 4.271 19 N -0.622 5.622 20 Si 0.796 3.204 21 H -0.216 1.216 22 H -0.228 1.228 23 H -0.194 1.194 24 C 0.003 3.997 25 O 0.044 5.956 26 N -0.069 5.069 27 H 0.116 0.884 28 H 0.123 0.877 29 H 0.104 0.896 30 H 0.214 0.786 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.132 0.868 34 H 0.111 0.889 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.100 0.900 38 H 0.202 0.798 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.713 -15.508 3.420 25.314 hybrid contribution 0.923 2.130 -0.076 2.323 sum -18.790 -13.378 3.344 23.308 Atomic orbital electron populations 1.20423 0.82401 1.05461 1.05054 1.24230 1.00986 0.87247 1.01563 1.23201 0.89460 1.02851 1.01731 1.23888 0.96583 0.84474 1.10144 1.16414 0.81132 0.85424 0.77509 1.90880 1.86311 1.13514 1.52821 1.48550 1.05086 1.09723 1.69982 1.22463 0.98842 0.77570 1.03835 1.22720 0.91487 0.96913 1.03644 1.22522 0.93699 0.94758 1.00325 0.90197 1.20422 0.90297 0.85190 0.96982 0.93227 1.22280 0.99641 0.99042 1.00389 1.42660 1.41755 1.18852 1.34518 1.19589 1.09479 0.99384 1.07639 0.90507 1.25492 1.02948 0.99013 0.99650 1.69814 1.46486 1.17331 1.28613 0.85238 0.79431 0.77115 0.78611 1.21576 1.22823 1.19398 1.22147 0.79851 0.96826 1.00916 1.85021 1.21522 1.21549 1.67491 1.73712 0.89550 1.25125 1.18549 0.88358 0.87700 0.89600 0.78558 0.89130 0.89458 0.86751 0.88902 0.94022 0.94744 0.90037 0.79811 0.94343 0.93187 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.47 71.24 0.75 0.04 16 2 C 0.02 0.32 7.31 43.55 0.32 0.64 16 3 C -0.15 -3.11 10.91 22.68 0.25 -2.87 16 4 C -0.09 -2.13 7.08 24.38 0.17 -1.95 16 5 C 0.61 19.05 7.85 86.69 0.68 19.73 16 6 O -0.56 -21.84 17.17 -3.97 -0.07 -21.91 16 7 N -0.60 -17.22 3.33 -815.51 -2.71 -19.93 16 8 C 0.09 1.86 5.58 86.73 0.48 2.35 16 9 C -0.11 -2.05 5.58 31.79 0.18 -1.88 16 10 C -0.09 -2.68 2.63 -9.39 -0.02 -2.70 16 11 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 12 C 0.18 6.33 2.41 44.99 0.11 6.44 16 13 H 0.05 1.77 8.05 -2.38 -0.02 1.75 16 14 C -0.15 -4.75 9.34 71.98 0.67 -4.08 16 15 N -0.74 -35.68 4.82 -322.94 -1.56 -37.23 16 16 C -0.23 -12.41 9.93 84.04 0.83 -11.58 16 17 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 18 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 19 N -0.97 -60.18 13.06 21.65 0.28 -59.90 16 20 Si 0.97 46.56 29.55 68.60 2.03 48.59 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 22 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 24 C 0.12 4.22 6.08 86.86 0.53 4.75 16 25 O 0.11 2.61 9.02 65.82 0.59 3.20 16 26 N -0.37 -8.05 12.04 -48.86 -0.59 -8.64 16 27 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.20 3.40 8.06 -2.91 -0.02 3.37 16 31 H 0.09 1.53 7.85 -2.38 -0.02 1.51 16 32 H 0.09 1.52 7.71 -2.39 -0.02 1.51 16 33 H 0.11 1.55 8.13 -2.39 -0.02 1.54 16 34 H 0.09 1.58 8.01 -2.38 -0.02 1.56 16 35 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 1.82 7.50 -2.38 -0.02 1.80 16 38 H 0.37 19.72 7.80 -92.71 -0.72 18.99 16 39 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 40 H 0.05 2.07 8.04 -2.39 -0.02 2.05 16 41 H 0.06 2.34 8.04 -2.39 -0.02 2.32 16 Total: -1.00 -71.94 345.17 3.71 -68.24 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.31 Total: 22.78 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 5.41 Total: 4.80 kcal Atomic # 7 Polarization: -121.13 SS G_CDS: -4.57 Total: -125.71 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: 0.53 Total: -18.71 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -71.94 3.71 -68.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754787579.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.179 kcal (2) G-P(sol) polarization free energy of solvation -71.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds