Wall clock time and date at job start Tue Mar 31 2020 02:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46491 * 109.46898 * 2 1 4 4 C 1.46768 * 124.35065 * 90.00033 * 3 2 1 5 5 C 1.54480 * 105.55098 * 163.03124 * 4 3 2 6 6 H 1.09002 * 110.96830 * 267.21959 * 5 4 3 7 7 C 1.50698 * 110.96920 * 143.49338 * 5 4 3 8 8 O 1.21273 * 120.00226 * 359.97438 * 7 5 4 9 9 N 1.34781 * 119.99776 * 179.97438 * 7 5 4 10 10 C 1.46505 * 119.99831 * 179.97438 * 9 7 5 11 11 C 1.50704 * 109.46611 * 90.00342 * 10 9 7 12 12 H 1.07993 * 120.00257 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99498 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00357 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99656 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47203 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46884 * 119.99970 * 15 13 11 18 18 H 1.48494 * 109.47663 * 240.00050 * 15 13 11 19 19 C 1.46504 * 120.00240 * 0.02562 * 9 7 5 20 20 C 1.53000 * 109.47261 * 89.99675 * 19 9 7 21 21 C 1.47192 * 109.47016 * 180.02562 * 20 19 9 22 22 N 8.05537 * 121.90464 * 334.49762 * 2 1 3 23 23 C 1.54633 * 101.76342 * 25.37218 * 5 4 3 24 24 C 1.34570 * 124.43548 * 269.93385 * 3 2 1 25 25 O 1.21276 * 124.91592 * 0.40206 * 24 3 2 26 26 H 1.08998 * 109.47619 * 60.00188 * 1 2 3 27 27 H 1.09003 * 109.47186 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47385 * 299.99699 * 1 2 3 29 29 H 1.08996 * 109.46783 * 239.99882 * 2 1 3 30 30 H 1.09000 * 109.46916 * 120.00046 * 2 1 3 31 31 H 1.09002 * 110.24468 * 43.98628 * 4 3 2 32 32 H 1.09002 * 110.24463 * 282.07386 * 4 3 2 33 33 H 1.08999 * 109.46855 * 209.99823 * 10 9 7 34 34 H 1.08998 * 109.47083 * 330.00582 * 10 9 7 35 35 H 0.96996 * 120.00138 * 179.97438 * 14 13 11 36 36 H 1.08997 * 109.46898 * 210.00282 * 19 9 7 37 37 H 1.08999 * 109.46636 * 329.99849 * 19 9 7 38 38 H 1.08998 * 109.46978 * 300.00442 * 20 19 9 39 39 H 1.09004 * 109.46914 * 60.00073 * 20 19 9 40 40 H 1.09002 * 110.48603 * 93.88148 * 23 5 4 41 41 H 1.08998 * 110.48250 * 216.39069 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1619 1.2117 5 6 3.1734 3.3455 0.7504 6 1 4.2323 3.1061 0.8478 7 6 2.8343 4.5992 1.5148 8 8 1.9669 4.5769 2.3621 9 7 3.4950 5.7452 1.2568 10 6 3.1650 6.9642 1.9996 11 6 4.0205 7.0451 3.2376 12 1 4.7378 6.2663 3.4501 13 6 3.8864 8.1129 4.0995 14 7 3.0118 9.0605 3.8415 15 14 4.9463 8.2128 5.6344 16 1 5.8433 7.0308 5.6945 17 1 5.7634 9.4521 5.5919 18 1 4.0753 8.2353 6.8369 19 6 4.5425 5.7724 0.2329 20 6 3.9232 6.1245 -1.1211 21 6 4.9755 6.1511 -2.1499 22 7 5.7874 6.1721 -2.9443 23 6 2.7695 3.4775 -0.7364 24 6 2.2731 2.0982 -1.1099 25 8 2.1252 1.6969 -2.2447 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.8324 1.5531 1.9383 32 1 1.3635 2.5294 1.6438 33 1 3.3524 7.8346 1.3709 34 1 2.1134 6.9420 2.2854 35 1 2.9173 9.8115 4.4480 36 1 5.2892 6.5213 0.4968 37 1 5.0163 4.7927 0.1720 38 1 3.1765 5.3755 -1.3848 39 1 3.4493 7.1042 -1.0601 40 1 1.9738 4.2135 -0.8516 41 1 3.6325 3.7519 -1.3431 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067230910.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:55 Heat of formation + Delta-G solvation = -56.434259 kcal Electronic energy + Delta-G solvation = -23916.397516 eV Core-core repulsion = 20409.942561 eV Total energy + Delta-G solvation = -3506.454956 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.96191 -40.29810 -38.06824 -37.40304 -36.67722 -35.20517 -34.47278 -32.24012 -30.82695 -29.27576 -28.54259 -25.64936 -25.30766 -24.16927 -23.15434 -20.49301 -19.77223 -19.04968 -18.41576 -18.02695 -17.77550 -17.16988 -16.87445 -16.38992 -16.07897 -15.91537 -15.42482 -14.97703 -14.75481 -14.63644 -14.45588 -14.31739 -14.27756 -13.76912 -13.62411 -13.49009 -13.21705 -13.14922 -12.95156 -12.87238 -12.75145 -12.51224 -12.46299 -12.26368 -12.10416 -11.95322 -11.75368 -11.58790 -10.96591 -10.55045 -10.52092 -9.72951 -9.46726 -8.14167 -6.25592 1.43233 1.46133 1.50273 1.55722 1.66247 1.82138 1.85267 1.99330 2.29122 2.47979 3.01360 3.18732 3.29702 3.38176 3.74806 3.89145 4.00220 4.13012 4.14687 4.23367 4.28401 4.48081 4.52489 4.56912 4.58761 4.73648 4.84317 4.85240 4.95478 4.98478 5.08875 5.17074 5.28933 5.39469 5.58429 5.64297 5.90043 6.07309 6.16736 6.61472 6.73909 6.85881 7.10764 7.35976 7.50699 8.92801 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014516 B = 0.004737 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.383075 B = 5909.232686 C = 7376.321241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.116 3.884 3 N -0.614 5.614 4 C 0.118 3.882 5 C -0.112 4.112 6 H 0.147 0.853 7 C 0.518 3.482 8 O -0.576 6.576 9 N -0.591 5.591 10 C 0.258 3.742 11 C -0.536 4.536 12 H 0.058 0.942 13 C 0.012 3.988 14 N -0.927 5.927 15 Si 0.956 3.044 16 H -0.265 1.265 17 H -0.278 1.278 18 H -0.287 1.287 19 C 0.112 3.888 20 C -0.059 4.059 21 C 0.243 3.757 22 N -0.486 5.486 23 C -0.148 4.148 24 C 0.515 3.485 25 O -0.572 6.572 26 H 0.037 0.963 27 H 0.087 0.913 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.008 0.992 35 H 0.264 0.736 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.136 0.864 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.172 -14.599 -6.404 15.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.005 4.005 3 N -0.347 5.347 4 C -0.005 4.005 5 C -0.133 4.133 6 H 0.165 0.835 7 C 0.306 3.694 8 O -0.456 6.456 9 N -0.321 5.321 10 C 0.137 3.863 11 C -0.575 4.575 12 H 0.076 0.924 13 C -0.188 4.188 14 N -0.567 5.567 15 Si 0.782 3.218 16 H -0.189 1.189 17 H -0.204 1.204 18 H -0.213 1.213 19 C -0.013 4.013 20 C -0.100 4.100 21 C -0.074 4.074 22 N -0.164 5.164 23 C -0.188 4.188 24 C 0.304 3.696 25 O -0.452 6.452 26 H 0.056 0.944 27 H 0.106 0.894 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.026 0.974 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.128 0.872 38 H 0.154 0.846 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.419 -14.699 -7.644 16.573 hybrid contribution -0.133 0.693 1.299 1.478 sum 0.287 -14.006 -6.345 15.379 Atomic orbital electron populations 1.22132 0.95611 1.03256 1.01480 1.21552 0.94613 0.80152 1.04165 1.48545 1.64743 1.14449 1.06968 1.22011 1.00343 0.91343 0.86795 1.22230 1.04155 0.92620 0.94317 0.83549 1.20499 0.81108 0.84927 0.82866 1.90693 1.34068 1.85241 1.35555 1.48018 1.36698 1.10276 1.37058 1.18861 0.95255 0.81653 0.90539 1.21795 1.21036 1.06637 1.08007 0.92360 1.25691 0.96673 0.95484 1.00906 1.70025 1.36215 1.11654 1.38812 0.85541 0.78693 0.78206 0.79401 1.18919 1.20368 1.21306 1.21565 0.89936 1.05228 0.84536 1.20324 0.93011 1.08155 0.88474 1.29104 0.93425 0.91577 0.93299 1.81265 1.11989 1.10742 1.12367 1.22792 1.05032 0.95622 0.95349 1.21134 0.76365 0.87985 0.84104 1.90703 1.55925 1.76118 1.22498 0.94388 0.89443 0.92384 0.90529 0.87534 0.87505 0.90631 0.94729 0.97406 0.92707 0.89264 0.87185 0.84649 0.85791 0.86330 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 10.24 71.98 0.74 -1.92 16 2 C 0.12 1.85 6.66 86.38 0.58 2.42 16 3 N -0.61 -12.15 2.94 -817.78 -2.40 -14.55 16 4 C 0.12 2.29 6.71 86.83 0.58 2.87 16 5 C -0.11 -2.19 2.55 -10.48 -0.03 -2.21 16 6 H 0.15 2.03 7.25 -2.39 -0.02 2.01 16 7 C 0.52 16.00 6.95 87.66 0.61 16.61 16 8 O -0.58 -23.78 15.08 -3.01 -0.05 -23.83 16 9 N -0.59 -18.74 2.46 -826.14 -2.03 -20.77 16 10 C 0.26 11.53 5.16 85.63 0.44 11.97 16 11 C -0.54 -27.12 9.39 25.60 0.24 -26.88 16 12 H 0.06 2.90 7.81 -2.91 -0.02 2.87 16 13 C 0.01 0.61 5.46 84.66 0.46 1.07 16 14 N -0.93 -51.91 13.29 21.45 0.28 -51.63 16 15 Si 0.96 41.81 29.54 68.60 2.03 43.84 16 16 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 17 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 18 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 19 C 0.11 2.41 4.89 86.38 0.42 2.83 16 20 C -0.06 -1.02 5.22 28.79 0.15 -0.87 16 21 C 0.24 5.20 15.43 89.44 1.38 6.58 16 22 N -0.49 -13.40 18.54 20.00 0.37 -13.03 16 23 C -0.15 -2.68 4.06 30.59 0.12 -2.55 16 24 C 0.52 12.12 8.03 87.87 0.71 12.82 16 25 O -0.57 -17.77 17.60 -3.02 -0.05 -17.82 16 26 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 1.32 7.94 -2.39 -0.02 1.30 16 30 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 1.83 6.96 -2.39 -0.02 1.81 16 33 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 34 H 0.01 0.41 7.42 -2.39 -0.02 0.40 16 35 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 36 H 0.09 2.14 8.07 -2.39 -0.02 2.12 16 37 H 0.11 1.67 6.11 -2.39 -0.01 1.65 16 38 H 0.14 1.91 3.79 -2.39 -0.01 1.90 16 39 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.12 2.12 6.93 -2.39 -0.02 2.10 16 41 H 0.13 1.86 6.14 -2.39 -0.01 1.85 16 Total: -1.00 -73.77 345.15 5.60 -68.17 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 1.05 Total: 6.88 kcal Atomic # 6 Polarization: 16.34 SS G_CDS: 6.40 Total: 22.74 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -3.78 Total: -99.98 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -0.10 Total: -41.65 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -73.77 5.60 -68.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067230910.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.734 kcal (2) G-P(sol) polarization free energy of solvation -73.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds