Wall clock time and date at job start Tue Mar 31 2020 03:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34899 * 116.99993 * 2 1 4 4 O 1.21626 * 119.99394 * 0.02562 * 3 2 1 5 5 C 1.46493 * 120.00404 * 179.97438 * 3 2 1 6 6 C 1.37984 * 126.26309 * 180.02562 * 5 3 2 7 7 C 1.39805 * 106.96787 * 180.02562 * 6 5 3 8 8 C 1.50694 * 126.07685 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.47115 * 90.00089 * 8 7 6 10 10 C 1.46905 * 110.99900 * 294.29732 * 9 8 7 11 11 C 1.53235 * 109.33835 * 172.74669 * 10 9 8 12 12 N 1.47080 * 108.52278 * 53.83405 * 11 10 9 13 13 C 1.36939 * 120.88490 * 128.83678 * 12 11 10 14 14 H 1.07995 * 119.99698 * 206.56205 * 13 12 11 15 15 C 1.38812 * 119.99934 * 26.55351 * 13 12 11 16 16 N 1.31625 * 119.99742 * 17.03208 * 15 13 12 17 17 Si 1.86797 * 120.00145 * 197.03019 * 15 13 12 18 18 H 1.48505 * 109.46956 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47012 * 120.00094 * 17 15 13 20 20 H 1.48497 * 109.47190 * 240.00492 * 17 15 13 21 21 C 1.47084 * 118.23211 * 308.81169 * 12 11 10 22 22 C 1.46904 * 111.00168 * 169.99760 * 9 8 7 23 23 C 1.35482 * 107.83982 * 359.97438 * 7 6 5 24 24 N 1.34956 * 108.98676 * 0.02562 * 23 7 6 25 25 H 0.97005 * 125.63141 * 179.97438 * 24 23 7 26 26 H 1.08997 * 109.47310 * 299.99235 * 1 2 3 27 27 H 1.08995 * 109.47693 * 59.99781 * 1 2 3 28 28 H 1.09003 * 109.46646 * 179.97438 * 1 2 3 29 29 H 1.08003 * 126.51888 * 0.26097 * 6 5 3 30 30 H 1.09003 * 109.47208 * 209.99547 * 8 7 6 31 31 H 1.08997 * 109.47587 * 329.99971 * 8 7 6 32 32 H 1.09003 * 109.49064 * 292.70644 * 10 9 8 33 33 H 1.09003 * 109.48996 * 52.78847 * 10 9 8 34 34 H 1.08999 * 109.62983 * 294.12174 * 11 10 9 35 35 H 1.09003 * 109.62415 * 173.53887 * 11 10 9 36 36 H 0.96997 * 119.99640 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.62654 * 291.47240 * 21 12 11 38 38 H 1.09009 * 109.78393 * 170.99305 * 21 12 11 39 39 H 1.08996 * 109.49008 * 307.21630 * 22 9 8 40 40 H 1.08998 * 109.48858 * 67.28908 * 22 9 8 41 41 H 1.08005 * 125.50518 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4018 2.2219 0.0005 5 6 3.5273 1.2787 0.0006 6 6 4.2840 2.4326 0.0011 7 6 5.6260 2.0404 0.0009 8 6 6.8194 2.9605 0.0019 9 7 7.2070 3.2582 1.3873 10 6 6.1613 4.0298 2.0723 11 6 6.5190 4.1632 3.5563 12 7 7.8749 4.7233 3.6616 13 6 8.1266 5.8104 4.4554 14 1 8.9526 6.4671 4.2256 15 6 7.3200 6.0684 5.5552 16 7 6.5416 5.1226 6.0368 17 14 7.3393 7.7579 6.3519 18 1 8.2918 8.6364 5.6264 19 1 5.9782 8.3487 6.2926 20 1 7.7630 7.6318 7.7696 21 6 8.9533 4.0844 2.8921 22 6 8.4999 3.9542 1.4343 23 6 5.6626 0.6861 0.0009 24 7 4.3988 0.2126 0.0004 25 1 4.1461 -0.7239 -0.0001 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.9107 3.4460 0.0052 30 1 7.6506 2.4780 -0.5122 31 1 6.5639 3.8876 -0.5110 32 1 6.0889 5.0212 1.6251 33 1 5.2056 3.5149 1.9734 34 1 6.4906 3.1816 4.0295 35 1 5.8086 4.8295 4.0457 36 1 5.9782 5.3028 6.8055 37 1 9.1589 3.0954 3.3015 38 1 9.8544 4.6959 2.9421 39 1 9.2401 3.3845 0.8725 40 1 8.3948 4.9466 0.9959 41 1 6.5584 0.0828 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092936421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:58 Heat of formation + Delta-G solvation = -1.832954 kcal Electronic energy + Delta-G solvation = -23476.754171 eV Core-core repulsion = 19972.666905 eV Total energy + Delta-G solvation = -3504.087265 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.49466 -39.98316 -37.87418 -36.54440 -34.52024 -32.05058 -30.63392 -30.08544 -29.75008 -27.99908 -26.82130 -24.48192 -23.32208 -22.46099 -22.22799 -20.34527 -19.73989 -18.94649 -18.38962 -17.15036 -16.69567 -16.55596 -15.79177 -15.17264 -14.55354 -14.37879 -14.08568 -13.86979 -13.74128 -13.58150 -13.32009 -13.20483 -13.01630 -12.88742 -12.43513 -12.35050 -11.79140 -11.36482 -11.27396 -11.03854 -10.98387 -10.81275 -10.69462 -10.36921 -10.19864 -9.96650 -9.68043 -9.51159 -8.88524 -8.43742 -8.28222 -7.66744 -6.58151 -5.70747 -3.11610 1.16801 2.46632 2.59198 3.08114 3.08546 3.42074 3.49617 3.51803 4.55482 4.68137 4.76048 4.85278 4.94285 4.99874 5.16371 5.25167 5.32866 5.46526 5.55212 5.65682 5.82950 5.91152 6.03707 6.04787 6.13964 6.16636 6.25270 6.41785 6.46584 6.64554 6.70131 6.82068 6.88062 7.01291 7.31301 7.36295 7.61563 7.73637 7.76981 7.82241 7.92585 8.51236 9.28935 9.92846 10.51473 11.37848 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018490 B = 0.003697 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.001258 B = 7571.970152 C = 8652.834236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.368 6.368 3 C 0.537 3.463 4 O -0.500 6.500 5 C -0.057 4.057 6 C -0.077 4.077 7 C -0.163 4.163 8 C 0.123 3.877 9 N -0.529 5.529 10 C 0.036 3.964 11 C 0.179 3.821 12 N -0.596 5.596 13 C -0.250 4.250 14 H 0.066 0.934 15 C 0.000 4.000 16 N -0.903 5.903 17 Si 0.901 3.099 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.291 1.291 21 C 0.149 3.851 22 C 0.044 3.956 23 C 0.059 3.941 24 N -0.529 5.529 25 H 0.422 0.578 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.148 0.852 30 H 0.074 0.926 31 H 0.035 0.965 32 H 0.022 0.978 33 H 0.065 0.935 34 H 0.024 0.976 35 H 0.086 0.914 36 H 0.252 0.748 37 H 0.024 0.976 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.027 0.973 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.090 -12.719 -15.405 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.285 6.285 3 C 0.383 3.617 4 O -0.388 6.388 5 C -0.167 4.167 6 C -0.104 4.104 7 C -0.170 4.170 8 C -0.005 4.005 9 N -0.254 5.254 10 C -0.093 4.093 11 C 0.053 3.947 12 N -0.319 5.319 13 C -0.379 4.379 14 H 0.083 0.917 15 C -0.198 4.198 16 N -0.548 5.548 17 Si 0.731 3.269 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.218 1.218 21 C 0.023 3.977 22 C -0.085 4.085 23 C -0.079 4.079 24 N -0.124 5.124 25 H 0.259 0.741 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.119 0.881 29 H 0.166 0.834 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.042 0.958 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.045 0.955 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.470 -12.979 -14.998 20.863 hybrid contribution -0.529 1.155 0.130 1.277 sum -6.999 -11.824 -14.868 20.245 Atomic orbital electron populations 1.23252 0.75759 1.03614 1.02828 1.86543 1.23895 1.33024 1.85062 1.19859 0.87104 0.81622 0.73137 1.90915 1.65456 1.35786 1.46638 1.19132 0.86228 0.88453 1.22875 1.21319 0.91958 0.96872 1.00239 1.19339 0.94182 0.93161 1.10293 1.20389 0.93530 0.95811 0.90802 1.62010 1.03376 1.47050 1.12951 1.22907 0.93712 0.94065 0.98653 1.20842 0.87318 0.97618 0.88884 1.44145 1.02779 1.33373 1.51651 1.19233 1.14338 1.00397 1.03956 0.91669 1.25017 1.00876 0.97719 0.96216 1.70050 1.29556 1.30617 1.24550 0.86244 0.77413 0.84357 0.78903 1.20337 1.21616 1.21788 1.20956 0.91642 0.96133 0.89007 1.22614 0.90493 0.95560 0.99861 1.21828 0.86876 0.95161 1.04038 1.41758 1.05820 1.08553 1.56249 0.74066 0.91621 0.91812 0.88099 0.83391 0.90772 0.94698 0.95967 0.91647 0.95814 0.89576 0.93758 0.95822 0.92773 0.92101 0.95508 0.80762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.57 101.05 1.07 1.38 16 2 O -0.37 -4.03 10.58 -41.04 -0.43 -4.47 16 3 C 0.54 7.33 7.93 34.06 0.27 7.60 16 4 O -0.50 -8.17 16.68 -19.36 -0.32 -8.50 16 5 C -0.06 -0.76 7.10 -82.00 -0.58 -1.34 16 6 C -0.08 -1.10 9.08 -39.09 -0.35 -1.46 16 7 C -0.16 -2.20 4.96 -105.02 -0.52 -2.72 16 8 C 0.12 1.74 5.45 -4.98 -0.03 1.72 16 9 N -0.53 -9.46 4.62 -235.76 -1.09 -10.55 16 10 C 0.04 0.73 5.44 -3.70 -0.02 0.71 16 11 C 0.18 4.51 5.42 -3.60 -0.02 4.50 16 12 N -0.60 -15.52 3.04 -172.02 -0.52 -16.04 16 13 C -0.25 -7.03 9.63 -15.06 -0.15 -7.18 16 14 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 15 C 0.00 0.00 4.93 -17.43 -0.09 -0.09 16 16 N -0.90 -26.93 11.15 55.49 0.62 -26.31 16 17 Si 0.90 22.17 29.59 -169.99 -5.03 17.14 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 C 0.15 3.23 6.69 -3.60 -0.02 3.20 16 22 C 0.04 0.79 5.62 -3.70 -0.02 0.77 16 23 C 0.06 0.64 11.78 -17.16 -0.20 0.44 16 24 N -0.53 -5.41 6.07 -9.53 -0.06 -5.47 16 25 H 0.42 3.02 8.96 -40.82 -0.37 2.65 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.15 2.19 8.06 -52.48 -0.42 1.77 16 30 H 0.07 0.89 7.97 -51.93 -0.41 0.48 16 31 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 1.29 5.91 -51.93 -0.31 0.98 16 34 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 2.41 6.12 -51.93 -0.32 2.09 16 36 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.05 1.12 7.96 -51.92 -0.41 0.70 16 39 H 0.06 0.91 7.99 -51.93 -0.41 0.49 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.18 1.37 8.06 -52.48 -0.42 0.94 16 LS Contribution 339.98 15.07 5.12 5.12 Total: -1.00 -33.77 339.98 -8.39 -42.15 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -6.01 Total: -0.62 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -0.66 Total: 7.54 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -1.05 Total: -58.37 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.76 Total: -12.96 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.77 -8.39 -42.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.321 kcal (2) G-P(sol) polarization free energy of solvation -33.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds