Wall clock time and date at job start Tue Mar 31 2020 03:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36937 * 119.99968 * 2 1 4 4 H 1.08004 * 120.00170 * 202.37096 * 3 2 1 5 5 C 1.38806 * 119.99866 * 22.37834 * 3 2 1 6 6 N 1.31613 * 120.00410 * 11.30248 * 5 3 2 7 7 Si 1.86811 * 119.99855 * 191.30095 * 5 3 2 8 8 H 1.48496 * 109.47031 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.46958 * 119.99880 * 7 5 3 10 10 H 1.48498 * 109.47189 * 240.00166 * 7 5 3 11 11 C 1.46502 * 119.99759 * 180.02562 * 2 1 3 12 12 N 1.46495 * 109.46704 * 269.99493 * 11 2 1 13 13 C 1.33800 * 124.17670 * 269.95801 * 12 11 2 14 14 O 1.21535 * 123.76998 * 0.06098 * 13 12 11 15 15 N 1.34528 * 112.45427 * 180.02562 * 13 12 11 16 16 C 1.47311 * 106.61961 * 0.02562 * 15 13 12 17 17 C 1.53001 * 110.59571 * 241.46786 * 16 15 13 18 18 C 1.52999 * 117.49673 * 59.87626 * 17 16 15 19 19 C 1.52999 * 60.03269 * 107.47734 * 18 17 16 20 20 C 1.53000 * 110.73015 * 118.59065 * 16 15 13 21 21 C 1.52999 * 117.50252 * 11.66188 * 20 16 15 22 22 C 1.52999 * 117.49908 * 303.00439 * 20 16 15 23 23 C 1.34766 * 124.17671 * 90.00351 * 12 11 2 24 24 O 1.21230 * 127.16165 * 359.97438 * 23 12 11 25 25 H 1.09004 * 109.46978 * 274.22814 * 1 2 3 26 26 H 1.09006 * 109.47311 * 34.22226 * 1 2 3 27 27 H 1.08998 * 109.47483 * 154.22724 * 1 2 3 28 28 H 0.97004 * 120.00363 * 180.02562 * 6 5 3 29 29 H 1.09001 * 109.46688 * 149.99503 * 11 2 1 30 30 H 1.08997 * 109.47280 * 29.99628 * 11 2 1 31 31 H 0.96999 * 126.68887 * 180.02562 * 15 13 12 32 32 H 1.09001 * 115.55307 * 274.20687 * 17 16 15 33 33 H 1.09002 * 117.50210 * 214.97675 * 18 17 16 34 34 H 1.09005 * 117.50006 * 359.97438 * 18 17 16 35 35 H 1.09004 * 117.50261 * 107.50259 * 19 18 17 36 36 H 1.08998 * 117.50078 * 252.52405 * 19 18 17 37 37 H 1.09000 * 115.54825 * 157.33185 * 20 16 15 38 38 H 1.09001 * 117.49451 * 0.02562 * 21 20 16 39 39 H 1.09000 * 117.50153 * 145.01860 * 21 20 16 40 40 H 1.08999 * 117.49805 * 214.98463 * 22 20 16 41 41 H 1.08997 * 117.49661 * 359.97167 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2211 -0.3560 5 6 1.5340 2.3427 0.4577 6 7 0.3843 2.2688 1.0940 7 14 2.3374 4.0046 0.1705 8 1 3.6146 3.8168 -0.5634 9 1 1.4279 4.8621 -0.6312 10 1 2.6080 4.6561 1.4772 11 6 2.1975 -1.2688 -0.0006 12 7 2.4416 -1.6921 1.3804 13 6 3.5260 -1.3566 2.0889 14 8 4.4253 -0.6613 1.6589 15 7 3.5090 -1.8742 3.3305 16 6 2.2588 -2.6444 3.4488 17 6 1.3734 -2.0665 4.5547 18 6 0.9220 -0.6117 4.4105 19 6 -0.0814 -1.7476 4.2009 20 6 2.5558 -4.1213 3.7160 21 6 3.9926 -4.4979 4.0830 22 6 3.4347 -4.8594 2.7042 23 6 1.6023 -2.4684 2.0939 24 8 0.5427 -2.9303 1.7282 25 1 -0.3633 0.0758 1.0249 26 1 -0.3634 0.8498 -0.5780 27 1 -0.3634 -0.9254 -0.4468 28 1 -0.0461 3.0773 1.4135 29 1 3.1498 -1.1382 -0.5144 30 1 1.6083 -2.0282 -0.5147 31 1 4.1877 -1.7622 4.0144 32 1 1.5787 -2.4323 5.5608 33 1 0.8300 -0.0206 5.3216 34 1 1.2563 -0.0662 3.5279 35 1 -0.8336 -1.9038 4.9742 36 1 -0.4070 -1.9496 3.1805 37 1 1.7514 -4.6844 4.1891 38 1 4.7262 -3.6934 4.1346 39 1 4.1334 -5.3091 4.7974 40 1 3.2087 -5.9082 2.5120 41 1 3.8009 -4.2929 1.8481 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101536388.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:22 Heat of formation + Delta-G solvation = 50.934435 kcal Electronic energy + Delta-G solvation = -25721.321267 eV Core-core repulsion = 22219.522167 eV Total energy + Delta-G solvation = -3501.799100 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.12864 -38.20467 -37.57912 -36.28562 -35.63044 -34.81183 -32.85501 -30.83293 -27.91443 -26.40469 -25.77382 -22.87711 -22.67657 -22.03552 -21.81375 -21.29468 -20.12842 -19.43998 -17.48723 -17.15421 -16.69320 -15.77501 -15.37660 -15.22251 -15.02503 -14.61935 -14.36357 -14.13740 -13.71019 -13.50738 -13.31008 -12.98736 -12.19995 -12.00966 -11.91109 -11.63085 -11.39884 -11.10615 -10.95690 -10.84134 -10.73820 -10.64434 -10.50854 -10.30945 -10.05029 -10.03578 -9.99765 -9.82008 -9.37211 -9.06115 -8.95329 -8.65917 -7.07316 -5.84066 -3.32628 2.24598 2.87157 3.36301 3.43140 3.47368 3.51210 3.68704 3.84894 4.01606 4.30923 4.45503 4.60753 4.74064 4.96140 5.02944 5.17594 5.25099 5.39003 5.41967 5.46903 5.53150 5.55316 5.67294 5.78527 5.98668 6.01400 6.02519 6.13001 6.14687 6.33931 6.48118 6.59031 6.61925 6.74766 7.27571 7.30407 7.65824 7.79927 7.84530 8.07158 8.24913 8.85717 9.10245 9.67553 10.13960 11.19138 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019916 B = 0.006320 C = 0.006016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.563431 B = 4429.028560 C = 4653.517681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.156 3.844 2 N -0.568 5.568 3 C -0.260 4.260 4 H 0.079 0.921 5 C 0.010 3.990 6 N -0.899 5.899 7 Si 0.909 3.091 8 H -0.275 1.275 9 H -0.288 1.288 10 H -0.289 1.289 11 C 0.343 3.657 12 N -0.574 5.574 13 C 0.702 3.298 14 O -0.541 6.541 15 N -0.730 5.730 16 C 0.179 3.821 17 C -0.160 4.160 18 C -0.162 4.162 19 C -0.174 4.174 20 C -0.145 4.145 21 C -0.166 4.166 22 C -0.173 4.173 23 C 0.537 3.463 24 O -0.478 6.478 25 H 0.033 0.967 26 H 0.052 0.948 27 H 0.005 0.995 28 H 0.254 0.746 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.427 0.573 32 H 0.115 0.885 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.781 -12.993 7.402 15.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.288 5.288 3 C -0.389 4.389 4 H 0.096 0.904 5 C -0.189 4.189 6 N -0.542 5.542 7 Si 0.739 3.261 8 H -0.200 1.200 9 H -0.215 1.215 10 H -0.216 1.216 11 C 0.135 3.865 12 N -0.326 5.326 13 C 0.403 3.597 14 O -0.414 6.414 15 N -0.394 5.394 16 C 0.088 3.912 17 C -0.179 4.179 18 C -0.199 4.199 19 C -0.211 4.211 20 C -0.164 4.164 21 C -0.203 4.203 22 C -0.210 4.210 23 C 0.323 3.677 24 O -0.350 6.350 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.024 0.976 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.270 0.730 32 H 0.133 0.867 33 H 0.112 0.888 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.515 -12.609 6.771 14.531 hybrid contribution 0.613 1.099 0.649 1.416 sum 3.128 -11.510 7.420 14.047 Atomic orbital electron populations 1.20958 0.81592 0.96311 0.99937 1.44832 1.02823 1.01185 1.79937 1.19408 0.98397 0.84537 1.36575 0.90351 1.25112 0.97363 0.98925 0.97523 1.70095 1.17513 1.27386 1.39249 0.86108 0.78864 0.83609 0.77548 1.19986 1.21484 1.21618 1.21784 0.97319 0.87908 0.79457 1.49444 1.19323 1.45944 1.17935 1.16293 0.82908 0.79384 0.81096 1.90948 1.38036 1.39436 1.72983 1.45829 1.23223 1.55205 1.15156 1.20298 0.85303 0.90899 0.94743 1.22206 0.97159 1.00618 0.97959 1.22991 1.02643 0.90013 1.04255 1.23365 0.90697 1.02402 1.04644 1.22278 0.95472 0.93031 1.05639 1.22975 0.95473 1.03312 0.98556 1.22965 1.03484 1.01086 0.93507 1.20574 0.84072 0.77015 0.86036 1.90652 1.19570 1.49432 1.75307 0.94830 0.92965 0.97605 0.93563 0.89788 0.90533 0.72979 0.86707 0.88809 0.87482 0.88771 0.86588 0.85922 0.88388 0.88429 0.88236 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 9.01 59.85 0.54 4.40 16 2 N -0.57 -14.21 3.16 -184.86 -0.59 -14.80 16 3 C -0.26 -7.14 9.67 -15.06 -0.15 -7.29 16 4 H 0.08 2.21 7.84 -52.48 -0.41 1.80 16 5 C 0.01 0.29 5.13 -17.44 -0.09 0.20 16 6 N -0.90 -25.59 10.58 55.49 0.59 -25.00 16 7 Si 0.91 22.22 29.57 -169.99 -5.03 17.19 16 8 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 C 0.34 7.32 6.27 -63.75 -0.40 6.92 16 12 N -0.57 -11.53 2.84 -124.23 -0.35 -11.88 16 13 C 0.70 14.06 8.62 -88.01 -0.76 13.30 16 14 O -0.54 -12.75 17.48 5.34 0.09 -12.65 16 15 N -0.73 -11.22 4.65 -52.93 -0.25 -11.46 16 16 C 0.18 2.64 1.03 -132.09 -0.14 2.50 16 17 C -0.16 -2.26 5.44 -90.58 -0.49 -2.75 16 18 C -0.16 -2.75 9.87 -26.73 -0.26 -3.02 16 19 C -0.17 -2.74 9.71 -26.69 -0.26 -2.99 16 20 C -0.14 -1.69 5.27 -90.62 -0.48 -2.17 16 21 C -0.17 -1.59 9.88 -26.70 -0.26 -1.85 16 22 C -0.17 -1.95 9.76 -26.70 -0.26 -2.21 16 23 C 0.54 9.90 5.33 -10.56 -0.06 9.85 16 24 O -0.48 -9.55 15.52 5.60 0.09 -9.46 16 25 H 0.03 0.90 7.42 -51.93 -0.39 0.52 16 26 H 0.05 1.37 7.19 -51.93 -0.37 0.99 16 27 H 0.01 0.12 7.84 -51.93 -0.41 -0.29 16 28 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.08 1.78 7.75 -51.93 -0.40 1.37 16 30 H 0.08 1.49 7.73 -51.93 -0.40 1.09 16 31 H 0.43 5.48 8.05 -40.82 -0.33 5.15 16 32 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.11 2.38 8.02 -51.93 -0.42 1.96 16 35 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.12 2.17 5.23 -51.93 -0.27 1.90 16 37 H 0.12 1.30 8.13 -51.93 -0.42 0.88 16 38 H 0.10 0.95 6.53 -51.93 -0.34 0.61 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.09 1.22 8.12 -51.93 -0.42 0.80 16 LS Contribution 339.00 15.07 5.11 5.11 Total: -1.00 -31.40 339.00 -9.23 -40.62 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -5.83 Total: 7.45 kcal Atomic # 6 Polarization: 17.95 SS G_CDS: -3.06 Total: 14.88 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: -0.60 Total: -63.15 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: 0.18 Total: -22.11 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.40 -9.23 -40.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101536388.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.559 kcal (2) G-P(sol) polarization free energy of solvation -31.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds